Wall clock time and date at job start Tue Mar 31 2020 11:19:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.08996 * 109.47655 * 2 1
4 4 C 1.53003 * 109.46805 * 120.00083 * 2 1 3
5 5 C 1.50699 * 109.47065 * 62.89583 * 4 2 1
6 6 H 1.07997 * 120.00455 * 5.11933 * 5 4 2
7 7 C 1.37881 * 119.99438 * 185.12069 * 5 4 2
8 8 N 1.31508 * 120.00511 * 359.97438 * 7 5 4
9 9 Si 1.86808 * 119.99693 * 179.97438 * 7 5 4
10 10 H 1.48506 * 109.47058 * 0.02562 * 9 7 5
11 11 H 1.48500 * 109.46976 * 119.99926 * 9 7 5
12 12 H 1.48498 * 109.47266 * 240.00409 * 9 7 5
13 13 N 1.46897 * 109.46977 * 239.99604 * 2 1 3
14 14 C 1.46854 * 110.99864 * 62.07860 * 13 2 1
15 15 C 1.53040 * 109.51126 * 185.81606 * 14 13 2
16 16 C 1.53165 * 109.23978 * 300.74576 * 15 14 13
17 17 C 1.53133 * 109.09073 * 57.81650 * 16 15 14
18 18 C 1.46835 * 111.00228 * 186.31970 * 13 2 1
19 19 O 1.42782 * 109.36488 * 298.18016 * 16 15 14
20 20 C 1.43207 * 113.07753 * 291.81210 * 19 16 15
21 21 C 1.52964 * 108.46873 * 289.20365 * 20 19 16
22 22 C 1.50740 * 109.78874 * 49.04466 * 21 20 19
23 23 C 1.38599 * 118.74474 * 163.38190 * 22 21 20
24 24 C 1.38076 * 120.27737 * 179.65020 * 23 22 21
25 25 C 1.38254 * 119.86405 * 0.04727 * 24 23 22
26 26 C 1.38057 * 119.89369 * 0.09089 * 25 24 23
27 27 C 1.37898 * 121.37621 * 343.24953 * 22 21 20
28 28 H 1.08997 * 109.46680 * 300.00210 * 1 2 3
29 29 H 1.08996 * 109.46514 * 59.99745 * 1 2 3
30 30 H 1.08998 * 109.47216 * 180.02562 * 1 2 3
31 31 H 1.09006 * 109.46785 * 182.89568 * 4 2 1
32 32 H 1.09000 * 109.47280 * 302.89399 * 4 2 1
33 33 H 0.96994 * 120.00196 * 179.97438 * 8 7 5
34 34 H 1.08999 * 109.46204 * 65.80313 * 14 13 2
35 35 H 1.09001 * 109.45824 * 305.82578 * 14 13 2
36 36 H 1.09002 * 109.50639 * 180.82142 * 15 14 13
37 37 H 1.08998 * 109.51098 * 60.68118 * 15 14 13
38 38 H 1.09000 * 109.51182 * 62.14600 * 17 16 15
39 39 H 1.09009 * 109.50798 * 182.28441 * 17 16 15
40 40 H 1.08997 * 109.46464 * 294.22740 * 18 13 2
41 41 H 1.09000 * 109.46032 * 54.18573 * 18 13 2
42 42 H 1.08997 * 109.63963 * 169.50447 * 20 19 16
43 43 H 1.09003 * 109.63022 * 48.89052 * 20 19 16
44 44 H 1.08993 * 109.41916 * 288.94381 * 21 20 19
45 45 H 1.09004 * 109.41669 * 169.14212 * 21 20 19
46 46 H 1.08004 * 119.86373 * 359.67691 * 23 22 21
47 47 H 1.08003 * 120.06813 * 180.02562 * 24 23 22
48 48 H 1.07999 * 120.05256 * 180.02562 * 25 24 23
49 49 H 1.08006 * 119.85054 * 179.97438 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8935 1.0276 0.0000
4 6 2.0400 -0.7213 1.2493
5 6 1.5971 -2.1613 1.2139
6 1 1.0823 -2.5468 0.3463
7 6 1.8491 -2.9866 2.2892
8 7 2.4763 -2.5174 3.3456
9 14 1.2994 -4.7715 2.2457
10 1 0.6211 -5.0491 0.9542
11 1 2.4833 -5.6574 2.3830
12 1 0.3575 -5.0268 3.3650
13 7 2.0197 -0.6926 -1.1994
14 6 1.5898 0.0014 -2.4201
15 6 1.9920 -0.8229 -3.6452
16 6 3.5122 -1.0094 -3.6511
17 6 3.9380 -1.6929 -2.3486
18 6 3.4796 -0.8443 -1.1603
19 8 4.1455 0.2667 -3.7465
20 6 3.9407 0.9017 -5.0137
21 6 4.7460 0.1444 -6.0709
22 6 4.4775 -1.3343 -5.9546
23 6 4.8204 -2.1594 -7.0141
24 6 4.5952 -3.5196 -6.9385
25 6 4.0244 -4.0607 -5.8015
26 6 3.6799 -3.2392 -4.7468
27 6 3.9048 -1.8731 -4.8217
28 1 -0.3632 0.5139 0.8900
29 1 -0.3632 0.5139 -0.8900
30 1 -0.3633 -1.0276 0.0005
31 1 3.1288 -0.6765 1.2756
32 1 1.6349 -0.2383 2.1385
33 1 2.6532 -3.0979 4.1022
34 1 2.0667 0.9803 -2.4684
35 1 0.5069 0.1253 -2.4052
36 1 1.6858 -0.3007 -4.5518
37 1 1.5057 -1.7975 -3.6039
38 1 3.4800 -2.6802 -2.2889
39 1 5.0234 -1.7924 -2.3277
40 1 3.9485 0.1383 -1.2136
41 1 3.7691 -1.3346 -0.2308
42 1 4.2817 1.9358 -4.9646
43 1 2.8817 0.8737 -5.2704
44 1 5.8090 0.3326 -5.9204
45 1 4.4551 0.4886 -7.0634
46 1 5.2661 -1.7368 -7.9025
47 1 4.8641 -4.1594 -7.7660
48 1 3.8472 -5.1242 -5.7389
49 1 3.2336 -3.6626 -3.8591
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000411887218.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:19:36
Heat of formation + Delta-G solvation = -19.080054 kcal
Electronic energy + Delta-G solvation = -27873.707330 eV
Core-core repulsion = 24379.104809 eV
Total energy + Delta-G solvation = -3494.602520 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-40.92442 -38.45594 -37.19530 -34.58271 -32.78892 -32.29216 -31.11018 -30.63221
-29.48687 -28.01148 -26.84887 -24.32755 -23.84812 -23.37125 -22.51217 -21.82781
-20.23149 -19.18946 -18.90340 -17.18448 -16.57425 -15.98313 -15.72926 -15.33989
-15.03788 -14.54346 -14.37842 -14.17695 -13.92978 -13.79953 -13.64112 -13.34112
-13.10092 -12.87007 -12.45462 -12.30593 -12.12073 -11.96477 -11.82025 -11.55957
-11.36242 -11.07856 -11.00276 -10.89298 -10.80279 -10.70777 -10.61923 -10.47319
-10.22444 -9.97333 -9.76119 -9.40076 -9.04832 -8.89723 -8.79456 -8.61426
-8.22859 -7.35734 -5.86101 -3.83296 1.26319 1.30898 3.38849 3.46937
3.51782 3.64156 3.82894 4.53189 4.57227 4.57486 4.64639 4.72731
4.87442 4.99335 5.05704 5.09342 5.15946 5.31895 5.33520 5.50583
5.54221 5.57960 5.61781 5.69590 5.78137 5.83747 5.94621 5.96507
5.99127 6.02742 6.07018 6.12516 6.22033 6.34275 6.35563 6.38000
6.39393 6.45793 6.55028 6.64395 6.71644 6.85813 6.93298 7.00781
7.21801 7.28331 7.63064 7.74591 8.01562 8.07784 8.17806 8.63495
9.25471 9.78638 11.26093
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.015906 B = 0.004200 C = 0.003609
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1759.926916 B = 6664.865423 C = 7755.457805
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C 0.090 3.910
3 H 0.010 0.990
4 C 0.023 3.977
5 C -0.483 4.483
6 H 0.068 0.932
7 C 0.049 3.951
8 N -0.904 5.904
9 Si 0.885 3.115
10 H -0.273 1.273
11 H -0.288 1.288
12 H -0.288 1.288
13 N -0.512 5.512
14 C 0.056 3.944
15 C -0.129 4.129
16 C 0.158 3.842
17 C -0.095 4.095
18 C 0.061 3.939
19 O -0.359 6.359
20 C 0.054 3.946
21 C -0.113 4.113
22 C -0.076 4.076
23 C -0.123 4.123
24 C -0.122 4.122
25 C -0.123 4.123
26 C -0.104 4.104
27 C -0.096 4.096
28 H 0.048 0.952
29 H 0.030 0.970
30 H 0.072 0.928
31 H 0.014 0.986
32 H 0.022 0.978
33 H 0.256 0.744
34 H 0.027 0.973
35 H 0.072 0.928
36 H 0.060 0.940
37 H 0.081 0.919
38 H 0.087 0.913
39 H 0.067 0.933
40 H 0.026 0.974
41 H 0.100 0.900
42 H 0.095 0.905
43 H 0.057 0.943
44 H 0.082 0.918
45 H 0.080 0.920
46 H 0.118 0.882
47 H 0.119 0.881
48 H 0.122 0.878
49 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.149 3.786 -21.040 21.608
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.018 4.018
3 H 0.028 0.972
4 C -0.014 4.014
5 C -0.522 4.522
6 H 0.086 0.914
7 C -0.150 4.150
8 N -0.545 5.545
9 Si 0.714 3.286
10 H -0.197 1.197
11 H -0.214 1.214
12 H -0.215 1.215
13 N -0.237 5.237
14 C -0.073 4.073
15 C -0.166 4.166
16 C 0.119 3.881
17 C -0.133 4.133
18 C -0.067 4.067
19 O -0.278 6.278
20 C -0.023 4.023
21 C -0.151 4.151
22 C -0.076 4.076
23 C -0.141 4.141
24 C -0.140 4.140
25 C -0.141 4.141
26 C -0.122 4.122
27 C -0.097 4.097
28 H 0.067 0.933
29 H 0.049 0.951
30 H 0.091 0.909
31 H 0.032 0.968
32 H 0.040 0.960
33 H 0.065 0.935
34 H 0.045 0.955
35 H 0.091 0.909
36 H 0.079 0.921
37 H 0.099 0.901
38 H 0.106 0.894
39 H 0.086 0.914
40 H 0.044 0.956
41 H 0.118 0.882
42 H 0.113 0.887
43 H 0.075 0.925
44 H 0.101 0.899
45 H 0.099 0.901
46 H 0.136 0.864
47 H 0.137 0.863
48 H 0.140 0.860
49 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges 3.105 3.352 -20.714 21.212
hybrid contribution 0.061 -0.403 -0.294 0.503
sum 3.166 2.949 -21.008 21.449
Atomic orbital electron populations
1.21760 0.95543 1.02643 0.98857 1.21712 0.94904 0.93409 0.91755
0.97238 1.19293 0.95955 0.95835 0.90329 1.21236 1.35359 0.94469
1.01147 0.91375 1.25031 0.95932 0.98184 0.95837 1.69975 1.42833
1.35528 1.06200 0.86633 0.78202 0.85964 0.77772 1.19749 1.21442
1.21502 1.61867 1.10987 1.50069 1.00763 1.22017 1.00067 0.94833
0.90358 1.22125 0.94457 1.02134 0.97927 1.20413 0.92210 0.82476
0.93045 1.21695 1.00801 0.99425 0.91338 1.22020 0.87772 0.98000
0.98868 1.88169 1.74687 1.31713 1.33218 1.22599 0.99067 0.96540
0.84060 1.21113 1.01898 0.91806 1.00234 1.19504 0.98948 0.95511
0.93663 1.21008 1.01173 0.93705 0.98246 1.21073 0.99757 0.95045
0.98128 1.21118 0.99461 0.99820 0.93732 1.21228 0.99251 0.92696
0.99037 1.20207 0.99153 0.94800 0.95498 0.93321 0.95089 0.90942
0.96773 0.95979 0.93456 0.95470 0.90941 0.92102 0.90056 0.89440
0.91396 0.95568 0.88211 0.88710 0.92515 0.89930 0.90148 0.86360
0.86278 0.85999 0.85185
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.49 8.82 37.16 0.33 -2.16 16
2 C 0.09 1.86 2.34 -67.71 -0.16 1.71 16
3 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16
4 C 0.02 0.58 4.19 -27.88 -0.12 0.46 16
5 C -0.48 -13.07 7.62 -34.44 -0.26 -13.33 16
6 H 0.07 1.84 6.86 -52.49 -0.36 1.48 16
7 C 0.05 1.39 5.46 -17.82 -0.10 1.29 16
8 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16
9 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16
10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16
11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
12 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16
13 N -0.51 -9.79 3.85 -226.69 -0.87 -10.66 16
14 C 0.06 0.90 5.11 -3.83 -0.02 0.88 16
15 C -0.13 -1.84 4.71 -26.63 -0.13 -1.96 16
16 C 0.16 2.29 0.57 -91.63 -0.05 2.24 16
17 C -0.09 -1.55 4.73 -26.64 -0.13 -1.68 16
18 C 0.06 1.16 4.89 -3.84 -0.02 1.14 16
19 O -0.36 -5.28 9.00 -35.23 -0.32 -5.60 16
20 C 0.05 0.60 6.73 37.14 0.25 0.85 16
21 C -0.11 -1.13 6.00 -27.88 -0.17 -1.30 16
22 C -0.08 -0.91 5.78 -104.59 -0.60 -1.52 16
23 C -0.12 -1.30 9.67 -39.51 -0.38 -1.69 16
24 C -0.12 -1.26 10.05 -39.63 -0.40 -1.66 16
25 C -0.12 -1.38 10.05 -39.64 -0.40 -1.78 16
26 C -0.10 -1.34 8.93 -39.50 -0.35 -1.69 16
27 C -0.10 -1.29 4.76 -104.61 -0.50 -1.79 16
28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16
29 H 0.03 0.50 6.33 -51.93 -0.33 0.18 16
30 H 0.07 1.50 6.91 -51.93 -0.36 1.14 16
31 H 0.01 0.38 6.38 -51.93 -0.33 0.05 16
32 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16
33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16
34 H 0.03 0.45 7.74 -51.93 -0.40 0.05 16
35 H 0.07 1.13 6.07 -51.93 -0.32 0.81 16
36 H 0.06 0.78 6.40 -51.93 -0.33 0.44 16
37 H 0.08 1.20 8.03 -51.93 -0.42 0.79 16
38 H 0.09 1.44 6.44 -51.93 -0.33 1.10 16
39 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16
40 H 0.03 0.50 7.74 -51.93 -0.40 0.10 16
41 H 0.10 2.19 5.74 -51.93 -0.30 1.89 16
42 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16
43 H 0.06 0.61 6.16 -51.93 -0.32 0.29 16
44 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16
45 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16
46 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16
47 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16
48 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16
49 H 0.13 1.67 6.48 -52.48 -0.34 1.33 16
LS Contribution 364.14 15.07 5.49 5.49
Total: -1.00 -30.21 364.14 -11.09 -41.30
By element:
Atomic # 1 Polarization: 8.87 SS G_CDS: -7.90 Total: 0.97 kcal
Atomic # 6 Polarization: -18.78 SS G_CDS: -3.20 Total: -21.98 kcal
Atomic # 7 Polarization: -36.77 SS G_CDS: -0.14 Total: -36.90 kcal
Atomic # 8 Polarization: -5.28 SS G_CDS: -0.32 Total: -5.60 kcal
Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal
Total LS contribution 5.49 Total: 5.49 kcal
Total: -30.21 -11.09 -41.30 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000411887218.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.216 kcal
(2) G-P(sol) polarization free energy of solvation -30.208 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.992 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.089 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.296 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.080 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds