Wall clock time and date at job start Tue Mar 31 2020 11:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47655 * 2 1 4 4 C 1.53003 * 109.46805 * 120.00083 * 2 1 3 5 5 C 1.50699 * 109.47065 * 62.89583 * 4 2 1 6 6 H 1.07997 * 120.00455 * 5.11933 * 5 4 2 7 7 C 1.37881 * 119.99438 * 185.12069 * 5 4 2 8 8 N 1.31508 * 120.00511 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99693 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47058 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46976 * 119.99926 * 9 7 5 12 12 H 1.48498 * 109.47266 * 240.00409 * 9 7 5 13 13 N 1.46897 * 109.46977 * 239.99604 * 2 1 3 14 14 C 1.46854 * 110.99864 * 62.07860 * 13 2 1 15 15 C 1.53040 * 109.51126 * 185.81606 * 14 13 2 16 16 C 1.53165 * 109.23978 * 300.74576 * 15 14 13 17 17 C 1.53133 * 109.09073 * 57.81650 * 16 15 14 18 18 C 1.46835 * 111.00228 * 186.31970 * 13 2 1 19 19 O 1.42782 * 109.36488 * 298.18016 * 16 15 14 20 20 C 1.43207 * 113.07753 * 291.81210 * 19 16 15 21 21 C 1.52964 * 108.46873 * 289.20365 * 20 19 16 22 22 C 1.50740 * 109.78874 * 49.04466 * 21 20 19 23 23 C 1.38599 * 118.74474 * 163.38190 * 22 21 20 24 24 C 1.38076 * 120.27737 * 179.65020 * 23 22 21 25 25 C 1.38254 * 119.86405 * 0.04727 * 24 23 22 26 26 C 1.38057 * 119.89369 * 0.09089 * 25 24 23 27 27 C 1.37898 * 121.37621 * 343.24953 * 22 21 20 28 28 H 1.08997 * 109.46680 * 300.00210 * 1 2 3 29 29 H 1.08996 * 109.46514 * 59.99745 * 1 2 3 30 30 H 1.08998 * 109.47216 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46785 * 182.89568 * 4 2 1 32 32 H 1.09000 * 109.47280 * 302.89399 * 4 2 1 33 33 H 0.96994 * 120.00196 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.46204 * 65.80313 * 14 13 2 35 35 H 1.09001 * 109.45824 * 305.82578 * 14 13 2 36 36 H 1.09002 * 109.50639 * 180.82142 * 15 14 13 37 37 H 1.08998 * 109.51098 * 60.68118 * 15 14 13 38 38 H 1.09000 * 109.51182 * 62.14600 * 17 16 15 39 39 H 1.09009 * 109.50798 * 182.28441 * 17 16 15 40 40 H 1.08997 * 109.46464 * 294.22740 * 18 13 2 41 41 H 1.09000 * 109.46032 * 54.18573 * 18 13 2 42 42 H 1.08997 * 109.63963 * 169.50447 * 20 19 16 43 43 H 1.09003 * 109.63022 * 48.89052 * 20 19 16 44 44 H 1.08993 * 109.41916 * 288.94381 * 21 20 19 45 45 H 1.09004 * 109.41669 * 169.14212 * 21 20 19 46 46 H 1.08004 * 119.86373 * 359.67691 * 23 22 21 47 47 H 1.08003 * 120.06813 * 180.02562 * 24 23 22 48 48 H 1.07999 * 120.05256 * 180.02562 * 25 24 23 49 49 H 1.08006 * 119.85054 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5971 -2.1613 1.2139 6 1 1.0823 -2.5468 0.3463 7 6 1.8491 -2.9866 2.2892 8 7 2.4763 -2.5174 3.3456 9 14 1.2994 -4.7715 2.2457 10 1 0.6211 -5.0491 0.9542 11 1 2.4833 -5.6574 2.3830 12 1 0.3575 -5.0268 3.3650 13 7 2.0197 -0.6926 -1.1994 14 6 1.5898 0.0014 -2.4201 15 6 1.9920 -0.8229 -3.6452 16 6 3.5122 -1.0094 -3.6511 17 6 3.9380 -1.6929 -2.3486 18 6 3.4796 -0.8443 -1.1603 19 8 4.1455 0.2667 -3.7465 20 6 3.9407 0.9017 -5.0137 21 6 4.7460 0.1444 -6.0709 22 6 4.4775 -1.3343 -5.9546 23 6 4.8204 -2.1594 -7.0141 24 6 4.5952 -3.5196 -6.9385 25 6 4.0244 -4.0607 -5.8015 26 6 3.6799 -3.2392 -4.7468 27 6 3.9048 -1.8731 -4.8217 28 1 -0.3632 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1288 -0.6765 1.2756 32 1 1.6349 -0.2383 2.1385 33 1 2.6532 -3.0979 4.1022 34 1 2.0667 0.9803 -2.4684 35 1 0.5069 0.1253 -2.4052 36 1 1.6858 -0.3007 -4.5518 37 1 1.5057 -1.7975 -3.6039 38 1 3.4800 -2.6802 -2.2889 39 1 5.0234 -1.7924 -2.3277 40 1 3.9485 0.1383 -1.2136 41 1 3.7691 -1.3346 -0.2308 42 1 4.2817 1.9358 -4.9646 43 1 2.8817 0.8737 -5.2704 44 1 5.8090 0.3326 -5.9204 45 1 4.4551 0.4886 -7.0634 46 1 5.2661 -1.7368 -7.9025 47 1 4.8641 -4.1594 -7.7660 48 1 3.8472 -5.1242 -5.7389 49 1 3.2336 -3.6626 -3.8591 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411887218.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:36 Heat of formation + Delta-G solvation = -19.080054 kcal Electronic energy + Delta-G solvation = -27873.707330 eV Core-core repulsion = 24379.104809 eV Total energy + Delta-G solvation = -3494.602520 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.92442 -38.45594 -37.19530 -34.58271 -32.78892 -32.29216 -31.11018 -30.63221 -29.48687 -28.01148 -26.84887 -24.32755 -23.84812 -23.37125 -22.51217 -21.82781 -20.23149 -19.18946 -18.90340 -17.18448 -16.57425 -15.98313 -15.72926 -15.33989 -15.03788 -14.54346 -14.37842 -14.17695 -13.92978 -13.79953 -13.64112 -13.34112 -13.10092 -12.87007 -12.45462 -12.30593 -12.12073 -11.96477 -11.82025 -11.55957 -11.36242 -11.07856 -11.00276 -10.89298 -10.80279 -10.70777 -10.61923 -10.47319 -10.22444 -9.97333 -9.76119 -9.40076 -9.04832 -8.89723 -8.79456 -8.61426 -8.22859 -7.35734 -5.86101 -3.83296 1.26319 1.30898 3.38849 3.46937 3.51782 3.64156 3.82894 4.53189 4.57227 4.57486 4.64639 4.72731 4.87442 4.99335 5.05704 5.09342 5.15946 5.31895 5.33520 5.50583 5.54221 5.57960 5.61781 5.69590 5.78137 5.83747 5.94621 5.96507 5.99127 6.02742 6.07018 6.12516 6.22033 6.34275 6.35563 6.38000 6.39393 6.45793 6.55028 6.64395 6.71644 6.85813 6.93298 7.00781 7.21801 7.28331 7.63064 7.74591 8.01562 8.07784 8.17806 8.63495 9.25471 9.78638 11.26093 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015906 B = 0.004200 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.926916 B = 6664.865423 C = 7755.457805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.090 3.910 3 H 0.010 0.990 4 C 0.023 3.977 5 C -0.483 4.483 6 H 0.068 0.932 7 C 0.049 3.951 8 N -0.904 5.904 9 Si 0.885 3.115 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.288 1.288 13 N -0.512 5.512 14 C 0.056 3.944 15 C -0.129 4.129 16 C 0.158 3.842 17 C -0.095 4.095 18 C 0.061 3.939 19 O -0.359 6.359 20 C 0.054 3.946 21 C -0.113 4.113 22 C -0.076 4.076 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.123 4.123 26 C -0.104 4.104 27 C -0.096 4.096 28 H 0.048 0.952 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.014 0.986 32 H 0.022 0.978 33 H 0.256 0.744 34 H 0.027 0.973 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.026 0.974 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.057 0.943 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.118 0.882 47 H 0.119 0.881 48 H 0.122 0.878 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.149 3.786 -21.040 21.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.018 4.018 3 H 0.028 0.972 4 C -0.014 4.014 5 C -0.522 4.522 6 H 0.086 0.914 7 C -0.150 4.150 8 N -0.545 5.545 9 Si 0.714 3.286 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.215 1.215 13 N -0.237 5.237 14 C -0.073 4.073 15 C -0.166 4.166 16 C 0.119 3.881 17 C -0.133 4.133 18 C -0.067 4.067 19 O -0.278 6.278 20 C -0.023 4.023 21 C -0.151 4.151 22 C -0.076 4.076 23 C -0.141 4.141 24 C -0.140 4.140 25 C -0.141 4.141 26 C -0.122 4.122 27 C -0.097 4.097 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.032 0.968 32 H 0.040 0.960 33 H 0.065 0.935 34 H 0.045 0.955 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.044 0.956 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.075 0.925 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.136 0.864 47 H 0.137 0.863 48 H 0.140 0.860 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.105 3.352 -20.714 21.212 hybrid contribution 0.061 -0.403 -0.294 0.503 sum 3.166 2.949 -21.008 21.449 Atomic orbital electron populations 1.21760 0.95543 1.02643 0.98857 1.21712 0.94904 0.93409 0.91755 0.97238 1.19293 0.95955 0.95835 0.90329 1.21236 1.35359 0.94469 1.01147 0.91375 1.25031 0.95932 0.98184 0.95837 1.69975 1.42833 1.35528 1.06200 0.86633 0.78202 0.85964 0.77772 1.19749 1.21442 1.21502 1.61867 1.10987 1.50069 1.00763 1.22017 1.00067 0.94833 0.90358 1.22125 0.94457 1.02134 0.97927 1.20413 0.92210 0.82476 0.93045 1.21695 1.00801 0.99425 0.91338 1.22020 0.87772 0.98000 0.98868 1.88169 1.74687 1.31713 1.33218 1.22599 0.99067 0.96540 0.84060 1.21113 1.01898 0.91806 1.00234 1.19504 0.98948 0.95511 0.93663 1.21008 1.01173 0.93705 0.98246 1.21073 0.99757 0.95045 0.98128 1.21118 0.99461 0.99820 0.93732 1.21228 0.99251 0.92696 0.99037 1.20207 0.99153 0.94800 0.95498 0.93321 0.95089 0.90942 0.96773 0.95979 0.93456 0.95470 0.90941 0.92102 0.90056 0.89440 0.91396 0.95568 0.88211 0.88710 0.92515 0.89930 0.90148 0.86360 0.86278 0.85999 0.85185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.82 37.16 0.33 -2.16 16 2 C 0.09 1.86 2.34 -67.71 -0.16 1.71 16 3 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 4 C 0.02 0.58 4.19 -27.88 -0.12 0.46 16 5 C -0.48 -13.07 7.62 -34.44 -0.26 -13.33 16 6 H 0.07 1.84 6.86 -52.49 -0.36 1.48 16 7 C 0.05 1.39 5.46 -17.82 -0.10 1.29 16 8 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 9 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 13 N -0.51 -9.79 3.85 -226.69 -0.87 -10.66 16 14 C 0.06 0.90 5.11 -3.83 -0.02 0.88 16 15 C -0.13 -1.84 4.71 -26.63 -0.13 -1.96 16 16 C 0.16 2.29 0.57 -91.63 -0.05 2.24 16 17 C -0.09 -1.55 4.73 -26.64 -0.13 -1.68 16 18 C 0.06 1.16 4.89 -3.84 -0.02 1.14 16 19 O -0.36 -5.28 9.00 -35.23 -0.32 -5.60 16 20 C 0.05 0.60 6.73 37.14 0.25 0.85 16 21 C -0.11 -1.13 6.00 -27.88 -0.17 -1.30 16 22 C -0.08 -0.91 5.78 -104.59 -0.60 -1.52 16 23 C -0.12 -1.30 9.67 -39.51 -0.38 -1.69 16 24 C -0.12 -1.26 10.05 -39.63 -0.40 -1.66 16 25 C -0.12 -1.38 10.05 -39.64 -0.40 -1.78 16 26 C -0.10 -1.34 8.93 -39.50 -0.35 -1.69 16 27 C -0.10 -1.29 4.76 -104.61 -0.50 -1.79 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.03 0.50 6.33 -51.93 -0.33 0.18 16 30 H 0.07 1.50 6.91 -51.93 -0.36 1.14 16 31 H 0.01 0.38 6.38 -51.93 -0.33 0.05 16 32 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.03 0.45 7.74 -51.93 -0.40 0.05 16 35 H 0.07 1.13 6.07 -51.93 -0.32 0.81 16 36 H 0.06 0.78 6.40 -51.93 -0.33 0.44 16 37 H 0.08 1.20 8.03 -51.93 -0.42 0.79 16 38 H 0.09 1.44 6.44 -51.93 -0.33 1.10 16 39 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 40 H 0.03 0.50 7.74 -51.93 -0.40 0.10 16 41 H 0.10 2.19 5.74 -51.93 -0.30 1.89 16 42 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.61 6.16 -51.93 -0.32 0.29 16 44 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 47 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 48 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 49 H 0.13 1.67 6.48 -52.48 -0.34 1.33 16 LS Contribution 364.14 15.07 5.49 5.49 Total: -1.00 -30.21 364.14 -11.09 -41.30 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -7.90 Total: 0.97 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -3.20 Total: -21.98 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: -0.14 Total: -36.90 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.32 Total: -5.60 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.21 -11.09 -41.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411887218.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.216 kcal (2) G-P(sol) polarization free energy of solvation -30.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds