Wall clock time and date at job start Tue Mar 31 2020 11:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47655 * 2 1 4 4 C 1.53003 * 109.46805 * 120.00083 * 2 1 3 5 5 C 1.50699 * 109.47065 * 62.89583 * 4 2 1 6 6 H 1.07997 * 120.00455 * 5.11933 * 5 4 2 7 7 C 1.37881 * 119.99438 * 185.12069 * 5 4 2 8 8 N 1.31508 * 120.00511 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99693 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47058 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46976 * 119.99926 * 9 7 5 12 12 H 1.48498 * 109.47266 * 240.00409 * 9 7 5 13 13 N 1.46897 * 109.46977 * 239.99604 * 2 1 3 14 14 C 1.46854 * 110.99864 * 62.07860 * 13 2 1 15 15 C 1.53040 * 109.51126 * 185.81606 * 14 13 2 16 16 C 1.53165 * 109.23978 * 300.74576 * 15 14 13 17 17 C 1.53133 * 109.09073 * 57.81650 * 16 15 14 18 18 C 1.46835 * 111.00228 * 186.31970 * 13 2 1 19 19 O 1.42782 * 109.36488 * 298.18016 * 16 15 14 20 20 C 1.43207 * 113.07753 * 291.81210 * 19 16 15 21 21 C 1.52964 * 108.46873 * 289.20365 * 20 19 16 22 22 C 1.50740 * 109.78874 * 49.04466 * 21 20 19 23 23 C 1.38599 * 118.74474 * 163.38190 * 22 21 20 24 24 C 1.38076 * 120.27737 * 179.65020 * 23 22 21 25 25 C 1.38254 * 119.86405 * 0.04727 * 24 23 22 26 26 C 1.38057 * 119.89369 * 0.09089 * 25 24 23 27 27 C 1.37898 * 121.37621 * 343.24953 * 22 21 20 28 28 H 1.08997 * 109.46680 * 300.00210 * 1 2 3 29 29 H 1.08996 * 109.46514 * 59.99745 * 1 2 3 30 30 H 1.08998 * 109.47216 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46785 * 182.89568 * 4 2 1 32 32 H 1.09000 * 109.47280 * 302.89399 * 4 2 1 33 33 H 0.96994 * 120.00196 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.46204 * 65.80313 * 14 13 2 35 35 H 1.09001 * 109.45824 * 305.82578 * 14 13 2 36 36 H 1.09002 * 109.50639 * 180.82142 * 15 14 13 37 37 H 1.08998 * 109.51098 * 60.68118 * 15 14 13 38 38 H 1.09000 * 109.51182 * 62.14600 * 17 16 15 39 39 H 1.09009 * 109.50798 * 182.28441 * 17 16 15 40 40 H 1.08997 * 109.46464 * 294.22740 * 18 13 2 41 41 H 1.09000 * 109.46032 * 54.18573 * 18 13 2 42 42 H 1.08997 * 109.63963 * 169.50447 * 20 19 16 43 43 H 1.09003 * 109.63022 * 48.89052 * 20 19 16 44 44 H 1.08993 * 109.41916 * 288.94381 * 21 20 19 45 45 H 1.09004 * 109.41669 * 169.14212 * 21 20 19 46 46 H 1.08004 * 119.86373 * 359.67691 * 23 22 21 47 47 H 1.08003 * 120.06813 * 180.02562 * 24 23 22 48 48 H 1.07999 * 120.05256 * 180.02562 * 25 24 23 49 49 H 1.08006 * 119.85054 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5971 -2.1613 1.2139 6 1 1.0823 -2.5468 0.3463 7 6 1.8491 -2.9866 2.2892 8 7 2.4763 -2.5174 3.3456 9 14 1.2994 -4.7715 2.2457 10 1 0.6211 -5.0491 0.9542 11 1 2.4833 -5.6574 2.3830 12 1 0.3575 -5.0268 3.3650 13 7 2.0197 -0.6926 -1.1994 14 6 1.5898 0.0014 -2.4201 15 6 1.9920 -0.8229 -3.6452 16 6 3.5122 -1.0094 -3.6511 17 6 3.9380 -1.6929 -2.3486 18 6 3.4796 -0.8443 -1.1603 19 8 4.1455 0.2667 -3.7465 20 6 3.9407 0.9017 -5.0137 21 6 4.7460 0.1444 -6.0709 22 6 4.4775 -1.3343 -5.9546 23 6 4.8204 -2.1594 -7.0141 24 6 4.5952 -3.5196 -6.9385 25 6 4.0244 -4.0607 -5.8015 26 6 3.6799 -3.2392 -4.7468 27 6 3.9048 -1.8731 -4.8217 28 1 -0.3632 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1288 -0.6765 1.2756 32 1 1.6349 -0.2383 2.1385 33 1 2.6532 -3.0979 4.1022 34 1 2.0667 0.9803 -2.4684 35 1 0.5069 0.1253 -2.4052 36 1 1.6858 -0.3007 -4.5518 37 1 1.5057 -1.7975 -3.6039 38 1 3.4800 -2.6802 -2.2889 39 1 5.0234 -1.7924 -2.3277 40 1 3.9485 0.1383 -1.2136 41 1 3.7691 -1.3346 -0.2308 42 1 4.2817 1.9358 -4.9646 43 1 2.8817 0.8737 -5.2704 44 1 5.8090 0.3326 -5.9204 45 1 4.4551 0.4886 -7.0634 46 1 5.2661 -1.7368 -7.9025 47 1 4.8641 -4.1594 -7.7660 48 1 3.8472 -5.1242 -5.7389 49 1 3.2336 -3.6626 -3.8591 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411887218.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:34 Heat of formation + Delta-G solvation = -35.068440 kcal Electronic energy + Delta-G solvation = -27874.400638 eV Core-core repulsion = 24379.104809 eV Total energy + Delta-G solvation = -3495.295829 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.94966 -39.69158 -38.34522 -35.97298 -34.49630 -33.38897 -32.47814 -31.99426 -30.50171 -29.28493 -28.60043 -25.84920 -24.90113 -24.74735 -23.79808 -23.00394 -21.34503 -20.64318 -20.21391 -18.41328 -18.12472 -17.26920 -16.83391 -16.53818 -16.40377 -16.03950 -15.64119 -15.36079 -15.25285 -15.05011 -14.88795 -14.56662 -14.27110 -14.15088 -13.83595 -13.58685 -13.38361 -13.19749 -12.94651 -12.89408 -12.70265 -12.66406 -12.62692 -12.48446 -12.21502 -12.12293 -12.07812 -12.02972 -11.51827 -11.47474 -11.28720 -10.96334 -10.79477 -10.44403 -10.40962 -9.66642 -9.50548 -8.92555 -8.05607 -6.08771 0.40032 0.46164 1.42536 1.44245 1.56756 2.50232 2.74332 2.87367 3.14082 3.31512 3.55391 3.70915 3.81653 3.88703 3.96222 4.17770 4.26429 4.27765 4.29322 4.32568 4.40879 4.48807 4.54210 4.58307 4.61420 4.63721 4.68479 4.74085 4.81432 4.83537 4.89500 4.95559 5.00607 5.10866 5.11621 5.16767 5.18192 5.22978 5.28490 5.31492 5.50180 5.55616 5.57740 5.62476 5.68642 5.72362 5.93588 6.10335 6.29080 6.33094 6.47564 6.60041 7.06469 7.56924 9.07361 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015906 B = 0.004200 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.926916 B = 6664.865423 C = 7755.457805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.095 3.905 3 H 0.013 0.987 4 C 0.030 3.970 5 C -0.479 4.479 6 H 0.068 0.932 7 C -0.007 4.007 8 N -0.944 5.944 9 Si 0.952 3.048 10 H -0.262 1.262 11 H -0.287 1.287 12 H -0.285 1.285 13 N -0.521 5.521 14 C 0.059 3.941 15 C -0.122 4.122 16 C 0.166 3.834 17 C -0.090 4.090 18 C 0.070 3.930 19 O -0.384 6.384 20 C 0.047 3.953 21 C -0.109 4.109 22 C -0.087 4.087 23 C -0.124 4.124 24 C -0.120 4.120 25 C -0.131 4.131 26 C -0.122 4.122 27 C -0.116 4.116 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.054 0.946 31 H -0.011 1.011 32 H -0.007 1.007 33 H 0.256 0.744 34 H 0.027 0.973 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.019 0.981 41 H 0.060 0.940 42 H 0.112 0.888 43 H 0.062 0.938 44 H 0.084 0.916 45 H 0.108 0.892 46 H 0.146 0.854 47 H 0.147 0.853 48 H 0.138 0.862 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.660 3.534 -24.617 25.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.013 4.013 3 H 0.031 0.969 4 C -0.007 4.007 5 C -0.517 4.517 6 H 0.087 0.913 7 C -0.202 4.202 8 N -0.586 5.586 9 Si 0.778 3.222 10 H -0.186 1.186 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.246 5.246 14 C -0.069 4.069 15 C -0.160 4.160 16 C 0.127 3.873 17 C -0.127 4.127 18 C -0.058 4.058 19 O -0.303 6.303 20 C -0.029 4.029 21 C -0.146 4.146 22 C -0.088 4.088 23 C -0.142 4.142 24 C -0.138 4.138 25 C -0.148 4.148 26 C -0.140 4.140 27 C -0.116 4.116 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.007 0.993 32 H 0.011 0.989 33 H 0.065 0.935 34 H 0.045 0.955 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.037 0.963 41 H 0.078 0.922 42 H 0.130 0.870 43 H 0.080 0.920 44 H 0.103 0.897 45 H 0.126 0.874 46 H 0.163 0.837 47 H 0.165 0.835 48 H 0.155 0.845 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.607 3.105 -24.316 24.651 hybrid contribution 0.275 -0.276 0.776 0.868 sum 2.881 2.829 -23.540 23.883 Atomic orbital electron populations 1.21663 0.93778 1.01978 1.00530 1.21525 0.96208 0.92889 0.90683 0.96934 1.19141 0.94275 0.95686 0.91631 1.21432 1.34331 0.95203 1.00769 0.91346 1.25843 0.96227 1.02538 0.95609 1.70111 1.44419 1.37113 1.07000 0.85587 0.77730 0.80747 0.78119 1.18596 1.21284 1.21158 1.61830 1.10790 1.50608 1.01369 1.22074 1.00583 0.94823 0.89431 1.22071 0.94465 1.01673 0.97742 1.20149 0.92101 0.82796 0.92273 1.21585 1.00479 0.98895 0.91791 1.21815 0.88013 0.97622 0.98320 1.88127 1.74930 1.31749 1.35485 1.22866 0.99798 0.97325 0.82939 1.21138 1.01820 0.90445 1.01201 1.19804 0.98591 0.96860 0.93500 1.21356 1.00431 0.93764 0.98641 1.21449 0.98483 0.95523 0.98370 1.21367 0.99280 1.00561 0.93635 1.21266 1.00250 0.93021 0.99483 1.20134 1.00933 0.94775 0.95772 0.93277 0.91804 0.92666 0.99305 0.98860 0.93504 0.95485 0.89837 0.89906 0.90669 0.90047 0.91689 0.96271 0.92170 0.86974 0.92000 0.89731 0.87394 0.83659 0.83534 0.84451 0.86312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.57 8.82 71.98 0.63 -3.94 16 2 C 0.09 4.02 2.34 44.92 0.11 4.12 16 3 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 4 C 0.03 1.57 4.19 29.85 0.13 1.70 16 5 C -0.48 -26.64 7.62 25.60 0.20 -26.45 16 6 H 0.07 3.76 6.86 -2.91 -0.02 3.74 16 7 C -0.01 -0.39 5.46 84.66 0.46 0.07 16 8 N -0.94 -58.23 13.29 21.45 0.28 -57.94 16 9 Si 0.95 45.39 29.54 68.60 2.03 47.42 16 10 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 12 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 13 N -0.52 -20.17 3.85 -871.11 -3.35 -23.52 16 14 C 0.06 1.82 5.11 86.33 0.44 2.26 16 15 C -0.12 -3.32 4.71 30.66 0.14 -3.17 16 16 C 0.17 4.72 0.57 -11.45 -0.01 4.72 16 17 C -0.09 -3.03 4.73 30.65 0.14 -2.89 16 18 C 0.07 2.80 4.89 86.33 0.42 3.22 16 19 O -0.38 -10.89 9.00 -148.98 -1.34 -12.23 16 20 C 0.05 0.92 6.73 71.97 0.48 1.41 16 21 C -0.11 -1.85 6.00 29.85 0.18 -1.67 16 22 C -0.09 -1.88 5.78 -19.85 -0.11 -1.99 16 23 C -0.12 -2.20 9.67 22.32 0.22 -1.98 16 24 C -0.12 -2.10 10.05 22.24 0.22 -1.87 16 25 C -0.13 -2.67 10.05 22.23 0.22 -2.45 16 26 C -0.12 -3.05 8.93 22.32 0.20 -2.85 16 27 C -0.12 -2.97 4.76 -19.85 -0.09 -3.06 16 28 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 29 H 0.06 1.96 6.33 -2.39 -0.02 1.94 16 30 H 0.05 2.25 6.91 -2.39 -0.02 2.24 16 31 H -0.01 -0.65 6.38 -2.38 -0.02 -0.66 16 32 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 33 H 0.26 15.04 8.31 -92.71 -0.77 14.26 16 34 H 0.03 0.85 7.74 -2.39 -0.02 0.83 16 35 H 0.08 2.40 6.07 -2.39 -0.01 2.38 16 36 H 0.08 1.90 6.40 -2.39 -0.02 1.89 16 37 H 0.07 2.15 8.03 -2.39 -0.02 2.13 16 38 H 0.08 2.80 6.44 -2.39 -0.02 2.79 16 39 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 40 H 0.02 0.77 7.74 -2.39 -0.02 0.76 16 41 H 0.06 2.84 5.74 -2.39 -0.01 2.83 16 42 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.06 1.14 6.16 -2.39 -0.01 1.13 16 44 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 46 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 47 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 48 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 49 H 0.12 3.11 6.48 -2.91 -0.02 3.09 16 Total: -1.00 -67.02 364.14 2.53 -64.49 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.93 Total: 16.62 kcal Atomic # 6 Polarization: -38.81 SS G_CDS: 3.98 Total: -34.83 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -3.07 Total: -81.47 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -1.34 Total: -12.23 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -67.02 2.53 -64.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411887218.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.421 kcal (2) G-P(sol) polarization free energy of solvation -67.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds