Wall clock time and date at job start Tue Mar 31 2020 11:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47218 * 2 1 4 4 C 1.53002 * 109.46619 * 240.00149 * 2 1 3 5 5 C 1.50700 * 109.46584 * 175.00401 * 4 2 1 6 6 H 1.08003 * 120.00576 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99698 * 180.02562 * 5 4 2 8 8 N 1.31507 * 120.00324 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99969 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47014 * 59.99828 * 9 7 5 11 11 H 1.48494 * 109.47376 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47024 * 300.00187 * 9 7 5 13 13 N 1.46900 * 109.47050 * 120.00272 * 2 1 3 14 14 C 1.46834 * 110.99846 * 294.99754 * 13 2 1 15 15 C 1.53043 * 109.52808 * 185.81943 * 14 13 2 16 16 C 1.53167 * 109.20968 * 300.70271 * 15 14 13 17 17 C 1.53125 * 109.08037 * 57.84171 * 16 15 14 18 18 C 1.46836 * 111.00029 * 59.22405 * 13 2 1 19 19 O 1.42792 * 109.35408 * 298.22070 * 16 15 14 20 20 C 1.43205 * 113.03664 * 292.07959 * 19 16 15 21 21 C 1.52946 * 108.51942 * 289.29251 * 20 19 16 22 22 C 1.50734 * 109.81014 * 48.99859 * 21 20 19 23 23 C 1.38596 * 118.75478 * 163.26044 * 22 21 20 24 24 C 1.38066 * 120.29348 * 179.36437 * 23 22 21 25 25 C 1.38256 * 119.84900 * 359.97438 * 24 23 22 26 26 C 1.38065 * 119.90866 * 0.18755 * 25 24 23 27 27 C 1.37906 * 121.37979 * 342.93157 * 22 21 20 28 28 H 1.09005 * 109.47047 * 299.99845 * 1 2 3 29 29 H 1.09003 * 109.47242 * 59.99477 * 1 2 3 30 30 H 1.09002 * 109.47218 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46934 * 294.99879 * 4 2 1 32 32 H 1.08993 * 109.47429 * 55.00464 * 4 2 1 33 33 H 0.97002 * 120.00642 * 179.97438 * 8 7 5 34 34 H 1.09005 * 109.46453 * 65.80273 * 14 13 2 35 35 H 1.09001 * 109.45504 * 305.83698 * 14 13 2 36 36 H 1.09002 * 109.51707 * 180.77804 * 15 14 13 37 37 H 1.09005 * 109.55555 * 60.64691 * 15 14 13 38 38 H 1.09004 * 109.50366 * 62.13178 * 17 16 15 39 39 H 1.08994 * 109.51296 * 182.26121 * 17 16 15 40 40 H 1.08997 * 109.46558 * 294.27243 * 18 13 2 41 41 H 1.08998 * 109.46073 * 54.24474 * 18 13 2 42 42 H 1.09000 * 109.62589 * 48.99607 * 20 19 16 43 43 H 1.08999 * 109.63336 * 169.58006 * 20 19 16 44 44 H 1.08999 * 109.41157 * 288.89473 * 21 20 19 45 45 H 1.09004 * 109.42146 * 169.10650 * 21 20 19 46 46 H 1.08000 * 119.85002 * 359.38283 * 23 22 21 47 47 H 1.07999 * 120.07757 * 179.97438 * 24 23 22 48 48 H 1.07998 * 120.04514 * 180.17258 * 25 24 23 49 49 H 1.08006 * 119.85559 * 179.68195 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5418 -0.6150 -1.3127 6 1 4.0790 -0.0856 -0.5396 7 6 4.2302 -1.1927 -2.3584 8 7 3.5763 -1.8369 -3.3001 9 14 6.0919 -1.0604 -2.4375 10 1 6.6844 -1.6866 -1.2283 11 1 6.5869 -1.7605 -3.6499 12 1 6.4844 0.3706 -2.4966 13 7 2.0197 -0.6926 1.1994 14 6 1.6489 0.0388 2.4175 15 6 2.2961 -0.6298 3.6326 16 6 1.8179 -2.0821 3.7230 17 6 2.1761 -2.8088 2.4236 18 6 1.5338 -2.0775 1.2426 19 8 0.4016 -2.1035 3.9039 20 6 -0.0085 -1.5922 5.1771 21 6 0.3977 -2.5958 6.2574 22 6 1.8403 -2.9911 6.0711 23 6 2.5047 -3.6039 7.1217 24 6 3.8225 -3.9911 6.9812 25 6 4.4820 -3.7669 5.7869 26 6 3.8221 -3.1535 4.7407 27 6 2.5000 -2.7611 4.8821 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.7515 -1.7715 -1.2056 32 1 1.6054 -0.2617 -2.1370 33 1 4.0605 -2.2430 -4.0360 34 1 0.5649 0.0283 2.5317 35 1 1.9961 1.0693 2.3421 36 1 2.0096 -0.0950 4.5381 37 1 3.3807 -0.6096 3.5255 38 1 3.2589 -2.8199 2.2994 39 1 1.8033 -3.8322 2.4643 40 1 0.4502 -2.0788 1.3606 41 1 1.7985 -2.5843 0.3146 42 1 0.4813 -0.6363 5.3627 43 1 -1.0904 -1.4606 5.1877 44 1 -0.2331 -3.4817 6.1844 45 1 0.2705 -2.1418 7.2402 46 1 1.9892 -3.7796 8.0543 47 1 4.3370 -4.4680 7.8023 48 1 5.5119 -4.0710 5.6726 49 1 4.3397 -2.9741 3.8099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411887219.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:40 Heat of formation + Delta-G solvation = -20.447943 kcal Electronic energy + Delta-G solvation = -27845.530778 eV Core-core repulsion = 24350.868942 eV Total energy + Delta-G solvation = -3494.661836 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.95335 -38.55170 -37.25955 -34.54788 -32.78247 -32.33022 -31.13304 -30.51347 -29.40516 -27.97972 -27.18965 -24.23806 -23.91989 -23.14660 -22.93147 -21.84517 -20.42204 -19.32825 -18.54916 -17.19065 -16.20003 -16.03731 -15.76532 -15.51058 -15.11310 -14.68572 -14.49938 -14.19875 -13.97140 -13.80464 -13.65291 -13.26597 -12.95179 -12.94104 -12.50906 -12.39891 -12.00812 -11.95663 -11.83560 -11.70099 -11.56861 -11.24665 -11.10841 -11.05410 -10.91734 -10.65958 -10.55709 -10.41545 -10.27848 -9.92867 -9.82125 -9.43377 -9.07399 -8.93351 -8.80788 -8.63377 -8.21715 -7.34779 -5.85345 -3.83018 1.25511 1.30264 3.42460 3.46421 3.49724 3.63223 3.81691 4.52060 4.56447 4.58331 4.64001 4.71847 4.86326 4.98664 5.04254 5.08404 5.14542 5.30896 5.32711 5.51292 5.53543 5.56667 5.60019 5.68381 5.74489 5.81427 5.87961 5.91555 5.94768 5.99735 6.03125 6.10160 6.11787 6.17126 6.25931 6.35074 6.38070 6.44916 6.51839 6.55657 6.63713 6.76575 6.85381 6.92359 7.05652 7.26427 7.61546 7.76656 8.00470 8.10583 8.17535 8.62533 9.22957 9.78444 11.26591 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015571 B = 0.004178 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.779677 B = 6699.571613 C = 7986.550551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.088 3.912 3 H 0.068 0.932 4 C 0.029 3.971 5 C -0.490 4.490 6 H 0.060 0.940 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.280 1.280 13 N -0.510 5.510 14 C 0.058 3.942 15 C -0.130 4.130 16 C 0.159 3.841 17 C -0.096 4.096 18 C 0.058 3.942 19 O -0.359 6.359 20 C 0.054 3.946 21 C -0.113 4.113 22 C -0.076 4.076 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.123 4.123 26 C -0.104 4.104 27 C -0.096 4.096 28 H 0.040 0.960 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.021 0.979 32 H 0.017 0.983 33 H 0.257 0.743 34 H 0.033 0.967 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.033 0.967 41 H 0.092 0.908 42 H 0.057 0.943 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.118 0.882 47 H 0.119 0.881 48 H 0.122 0.878 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.161 -1.713 21.266 21.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.020 4.020 3 H 0.086 0.914 4 C -0.008 4.008 5 C -0.528 4.528 6 H 0.078 0.922 7 C -0.148 4.148 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.234 5.234 14 C -0.071 4.071 15 C -0.167 4.167 16 C 0.119 3.881 17 C -0.134 4.134 18 C -0.070 4.070 19 O -0.278 6.278 20 C -0.023 4.023 21 C -0.150 4.150 22 C -0.076 4.076 23 C -0.141 4.141 24 C -0.140 4.140 25 C -0.141 4.141 26 C -0.122 4.122 27 C -0.097 4.097 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.051 0.949 41 H 0.110 0.890 42 H 0.075 0.925 43 H 0.113 0.887 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.136 0.864 47 H 0.137 0.863 48 H 0.140 0.860 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.743 -1.889 20.928 21.542 hybrid contribution 0.399 0.047 0.319 0.513 sum -4.344 -1.843 21.246 21.764 Atomic orbital electron populations 1.22508 0.99826 1.01351 1.00481 1.21884 0.90034 0.98300 0.91793 0.91382 1.19232 0.96301 0.95409 0.89906 1.21145 0.91820 1.32938 1.06919 0.92185 1.24993 0.97861 0.95937 0.96011 1.69950 1.35254 1.36969 1.12328 0.86720 0.86559 0.77968 0.77042 1.20422 1.21713 1.20548 1.62059 1.59179 1.01331 1.00808 1.21955 0.97453 0.97350 0.90309 1.22138 1.02179 0.94454 0.97975 1.20387 0.80338 0.94552 0.92785 1.21699 1.02028 0.98297 0.91366 1.22028 0.96489 0.89966 0.98473 1.88168 1.21275 1.84280 1.34043 1.22594 1.00306 0.95702 0.83673 1.21107 0.93120 1.00760 1.00054 1.19503 0.95628 0.99176 0.93325 1.21005 0.94976 0.99813 0.98341 1.21073 0.94815 1.00392 0.97706 1.21123 0.99999 0.99588 0.93406 1.21233 0.93934 0.97691 0.99353 1.20195 0.94912 0.99445 0.95124 0.94126 0.92786 0.92885 0.96127 0.96440 0.93305 0.94907 0.91477 0.92053 0.90026 0.89435 0.91394 0.94861 0.88976 0.92494 0.88713 0.89935 0.90148 0.86362 0.86266 0.85989 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.25 8.50 37.16 0.32 -2.93 16 2 C 0.09 1.80 2.30 -67.71 -0.16 1.65 16 3 H 0.07 1.43 8.08 -51.93 -0.42 1.01 16 4 C 0.03 0.72 4.27 -27.88 -0.12 0.60 16 5 C -0.49 -13.61 8.84 -34.44 -0.30 -13.92 16 6 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 9 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 N -0.51 -9.69 4.36 -226.70 -0.99 -10.67 16 14 C 0.06 0.92 4.88 -3.84 -0.02 0.90 16 15 C -0.13 -1.84 4.71 -26.62 -0.13 -1.97 16 16 C 0.16 2.27 0.57 -91.64 -0.05 2.22 16 17 C -0.10 -1.54 4.72 -26.64 -0.13 -1.67 16 18 C 0.06 1.07 4.50 -3.84 -0.02 1.06 16 19 O -0.36 -5.15 9.00 -35.23 -0.32 -5.47 16 20 C 0.05 0.59 6.72 37.13 0.25 0.84 16 21 C -0.11 -1.11 6.00 -27.89 -0.17 -1.28 16 22 C -0.08 -0.91 5.78 -104.59 -0.60 -1.51 16 23 C -0.12 -1.29 9.67 -39.51 -0.38 -1.68 16 24 C -0.12 -1.25 10.05 -39.64 -0.40 -1.65 16 25 C -0.12 -1.37 10.05 -39.64 -0.40 -1.77 16 26 C -0.10 -1.33 8.95 -39.50 -0.35 -1.69 16 27 C -0.10 -1.28 4.76 -104.62 -0.50 -1.78 16 28 H 0.04 0.65 6.65 -51.93 -0.35 0.30 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.96 6.52 -51.93 -0.34 0.62 16 31 H 0.02 0.55 6.05 -51.93 -0.31 0.24 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.03 0.52 6.32 -51.93 -0.33 0.20 16 35 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 36 H 0.06 0.78 6.39 -51.93 -0.33 0.45 16 37 H 0.08 1.21 8.04 -51.93 -0.42 0.80 16 38 H 0.09 1.43 6.43 -51.93 -0.33 1.10 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.03 0.61 6.21 -51.93 -0.32 0.29 16 41 H 0.09 1.95 5.93 -51.93 -0.31 1.64 16 42 H 0.06 0.60 6.15 -51.93 -0.32 0.28 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 47 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 48 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 49 H 0.13 1.67 6.46 -52.48 -0.34 1.33 16 LS Contribution 364.62 15.07 5.49 5.49 Total: -1.00 -30.57 364.62 -11.23 -41.80 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.88 Total: 1.53 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: -3.25 Total: -23.21 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: -0.25 Total: -37.11 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.32 Total: -5.47 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.57 -11.23 -41.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411887219.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.355 kcal (2) G-P(sol) polarization free energy of solvation -30.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds