Wall clock time and date at job start Tue Mar 31 2020 11:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47218 * 2 1 4 4 C 1.53002 * 109.46619 * 240.00149 * 2 1 3 5 5 C 1.50700 * 109.46584 * 175.00401 * 4 2 1 6 6 H 1.08003 * 120.00576 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99698 * 180.02562 * 5 4 2 8 8 N 1.31507 * 120.00324 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99969 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47014 * 59.99828 * 9 7 5 11 11 H 1.48494 * 109.47376 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47024 * 300.00187 * 9 7 5 13 13 N 1.46900 * 109.47050 * 120.00272 * 2 1 3 14 14 C 1.46834 * 110.99846 * 294.99754 * 13 2 1 15 15 C 1.53043 * 109.52808 * 185.81943 * 14 13 2 16 16 C 1.53167 * 109.20968 * 300.70271 * 15 14 13 17 17 C 1.53125 * 109.08037 * 57.84171 * 16 15 14 18 18 C 1.46836 * 111.00029 * 59.22405 * 13 2 1 19 19 O 1.42792 * 109.35408 * 298.22070 * 16 15 14 20 20 C 1.43205 * 113.03664 * 292.07959 * 19 16 15 21 21 C 1.52946 * 108.51942 * 289.29251 * 20 19 16 22 22 C 1.50734 * 109.81014 * 48.99859 * 21 20 19 23 23 C 1.38596 * 118.75478 * 163.26044 * 22 21 20 24 24 C 1.38066 * 120.29348 * 179.36437 * 23 22 21 25 25 C 1.38256 * 119.84900 * 359.97438 * 24 23 22 26 26 C 1.38065 * 119.90866 * 0.18755 * 25 24 23 27 27 C 1.37906 * 121.37979 * 342.93157 * 22 21 20 28 28 H 1.09005 * 109.47047 * 299.99845 * 1 2 3 29 29 H 1.09003 * 109.47242 * 59.99477 * 1 2 3 30 30 H 1.09002 * 109.47218 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46934 * 294.99879 * 4 2 1 32 32 H 1.08993 * 109.47429 * 55.00464 * 4 2 1 33 33 H 0.97002 * 120.00642 * 179.97438 * 8 7 5 34 34 H 1.09005 * 109.46453 * 65.80273 * 14 13 2 35 35 H 1.09001 * 109.45504 * 305.83698 * 14 13 2 36 36 H 1.09002 * 109.51707 * 180.77804 * 15 14 13 37 37 H 1.09005 * 109.55555 * 60.64691 * 15 14 13 38 38 H 1.09004 * 109.50366 * 62.13178 * 17 16 15 39 39 H 1.08994 * 109.51296 * 182.26121 * 17 16 15 40 40 H 1.08997 * 109.46558 * 294.27243 * 18 13 2 41 41 H 1.08998 * 109.46073 * 54.24474 * 18 13 2 42 42 H 1.09000 * 109.62589 * 48.99607 * 20 19 16 43 43 H 1.08999 * 109.63336 * 169.58006 * 20 19 16 44 44 H 1.08999 * 109.41157 * 288.89473 * 21 20 19 45 45 H 1.09004 * 109.42146 * 169.10650 * 21 20 19 46 46 H 1.08000 * 119.85002 * 359.38283 * 23 22 21 47 47 H 1.07999 * 120.07757 * 179.97438 * 24 23 22 48 48 H 1.07998 * 120.04514 * 180.17258 * 25 24 23 49 49 H 1.08006 * 119.85559 * 179.68195 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5418 -0.6150 -1.3127 6 1 4.0790 -0.0856 -0.5396 7 6 4.2302 -1.1927 -2.3584 8 7 3.5763 -1.8369 -3.3001 9 14 6.0919 -1.0604 -2.4375 10 1 6.6844 -1.6866 -1.2283 11 1 6.5869 -1.7605 -3.6499 12 1 6.4844 0.3706 -2.4966 13 7 2.0197 -0.6926 1.1994 14 6 1.6489 0.0388 2.4175 15 6 2.2961 -0.6298 3.6326 16 6 1.8179 -2.0821 3.7230 17 6 2.1761 -2.8088 2.4236 18 6 1.5338 -2.0775 1.2426 19 8 0.4016 -2.1035 3.9039 20 6 -0.0085 -1.5922 5.1771 21 6 0.3977 -2.5958 6.2574 22 6 1.8403 -2.9911 6.0711 23 6 2.5047 -3.6039 7.1217 24 6 3.8225 -3.9911 6.9812 25 6 4.4820 -3.7669 5.7869 26 6 3.8221 -3.1535 4.7407 27 6 2.5000 -2.7611 4.8821 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.7515 -1.7715 -1.2056 32 1 1.6054 -0.2617 -2.1370 33 1 4.0605 -2.2430 -4.0360 34 1 0.5649 0.0283 2.5317 35 1 1.9961 1.0693 2.3421 36 1 2.0096 -0.0950 4.5381 37 1 3.3807 -0.6096 3.5255 38 1 3.2589 -2.8199 2.2994 39 1 1.8033 -3.8322 2.4643 40 1 0.4502 -2.0788 1.3606 41 1 1.7985 -2.5843 0.3146 42 1 0.4813 -0.6363 5.3627 43 1 -1.0904 -1.4606 5.1877 44 1 -0.2331 -3.4817 6.1844 45 1 0.2705 -2.1418 7.2402 46 1 1.9892 -3.7796 8.0543 47 1 4.3370 -4.4680 7.8023 48 1 5.5119 -4.0710 5.6726 49 1 4.3397 -2.9741 3.8099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411887219.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:38 Heat of formation + Delta-G solvation = -37.089520 kcal Electronic energy + Delta-G solvation = -27846.252411 eV Core-core repulsion = 24350.868942 eV Total energy + Delta-G solvation = -3495.383469 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.97254 -39.78494 -38.36195 -35.89115 -34.57538 -33.39197 -32.46289 -31.79197 -30.44084 -29.40512 -28.81372 -25.58180 -24.90426 -24.75739 -24.22378 -22.99308 -21.59468 -20.48688 -19.93892 -18.32035 -18.12536 -17.18663 -16.90320 -16.61184 -16.51265 -16.08439 -15.75953 -15.50799 -15.13222 -14.91384 -14.75258 -14.56711 -14.34139 -13.98151 -13.89300 -13.70366 -13.40922 -13.25600 -13.12504 -12.93442 -12.88987 -12.64554 -12.56898 -12.48624 -12.39516 -12.13350 -12.12203 -11.87533 -11.55199 -11.44491 -11.27192 -11.06069 -10.82408 -10.44165 -10.43123 -9.67476 -9.51106 -8.85762 -8.07388 -6.12121 0.39544 0.45604 1.42705 1.45298 1.52704 2.49026 2.73921 2.87585 3.15741 3.30530 3.55215 3.70601 3.81449 3.88360 3.96403 4.15931 4.22699 4.26399 4.29574 4.35684 4.37174 4.45949 4.50204 4.55048 4.58980 4.64128 4.67648 4.73404 4.79186 4.82756 4.87346 4.95553 4.99225 5.00731 5.11060 5.14758 5.16470 5.21704 5.23185 5.25434 5.38236 5.53211 5.55823 5.61970 5.68117 5.74112 5.92798 6.09879 6.28729 6.35855 6.48375 6.58174 7.01473 7.53538 9.04544 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015571 B = 0.004178 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.779677 B = 6699.571613 C = 7986.550551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.095 3.905 3 H 0.066 0.934 4 C 0.035 3.965 5 C -0.498 4.498 6 H 0.058 0.942 7 C -0.003 4.003 8 N -0.940 5.940 9 Si 0.954 3.046 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.270 1.270 13 N -0.525 5.525 14 C 0.061 3.939 15 C -0.123 4.123 16 C 0.168 3.832 17 C -0.092 4.092 18 C 0.069 3.931 19 O -0.380 6.380 20 C 0.047 3.953 21 C -0.109 4.109 22 C -0.087 4.087 23 C -0.124 4.124 24 C -0.120 4.120 25 C -0.131 4.131 26 C -0.123 4.123 27 C -0.116 4.116 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.045 0.955 31 H -0.002 1.002 32 H -0.010 1.010 33 H 0.258 0.742 34 H 0.039 0.961 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.034 0.966 41 H 0.053 0.947 42 H 0.061 0.939 43 H 0.114 0.886 44 H 0.085 0.915 45 H 0.107 0.893 46 H 0.146 0.854 47 H 0.147 0.853 48 H 0.137 0.863 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.064 -1.321 24.609 25.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.013 4.013 3 H 0.084 0.916 4 C -0.002 4.002 5 C -0.537 4.537 6 H 0.076 0.924 7 C -0.199 4.199 8 N -0.583 5.583 9 Si 0.780 3.220 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.195 1.195 13 N -0.249 5.249 14 C -0.067 4.067 15 C -0.161 4.161 16 C 0.129 3.871 17 C -0.130 4.130 18 C -0.059 4.059 19 O -0.300 6.300 20 C -0.029 4.029 21 C -0.146 4.146 22 C -0.087 4.087 23 C -0.142 4.142 24 C -0.138 4.138 25 C -0.149 4.149 26 C -0.141 4.141 27 C -0.116 4.116 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.016 0.984 32 H 0.009 0.991 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.132 0.868 44 H 0.104 0.896 45 H 0.126 0.874 46 H 0.164 0.836 47 H 0.165 0.835 48 H 0.155 0.845 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.650 -1.485 24.292 24.778 hybrid contribution 0.339 -0.105 -0.682 0.769 sum -4.311 -1.590 23.610 24.053 Atomic orbital electron populations 1.22358 0.97530 1.01316 1.01794 1.21609 0.91841 0.97310 0.90575 0.91601 1.19078 0.95304 0.94386 0.91396 1.21449 0.93150 1.32409 1.06657 0.92355 1.25825 1.02722 0.95649 0.95712 1.70087 1.37124 1.38037 1.13019 0.85662 0.80776 0.78359 0.77163 1.19692 1.21411 1.19508 1.61965 1.59816 1.01651 1.01507 1.21997 0.97964 0.97367 0.89349 1.22081 1.01339 0.94783 0.97888 1.20101 0.80849 0.94131 0.92037 1.21598 1.01155 0.98302 0.91950 1.21830 0.96588 0.89790 0.97711 1.88126 1.20891 1.84764 1.36196 1.22865 1.01482 0.96072 0.82528 1.21137 0.91760 1.00749 1.00963 1.19812 0.96708 0.99130 0.93048 1.21359 0.95131 0.98752 0.98939 1.21445 0.94961 0.99505 0.97903 1.21364 1.00831 0.99263 0.93447 1.21262 0.94261 0.98956 0.99631 1.20137 0.95170 1.00832 0.95495 0.91680 0.92512 0.93574 0.98401 0.99144 0.93330 0.94319 0.90891 0.89894 0.91061 0.90441 0.91490 0.94805 0.92850 0.92067 0.86816 0.89632 0.87435 0.83613 0.83529 0.84544 0.86486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.07 8.50 71.98 0.61 -5.46 16 2 C 0.09 3.98 2.30 44.92 0.10 4.08 16 3 H 0.07 2.78 8.08 -2.39 -0.02 2.76 16 4 C 0.04 1.88 4.27 29.85 0.13 2.01 16 5 C -0.50 -28.55 8.84 25.60 0.23 -28.33 16 6 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 7 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 8 N -0.94 -58.35 13.29 21.45 0.28 -58.06 16 9 Si 0.95 45.81 29.54 68.60 2.03 47.84 16 10 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 13 N -0.53 -20.31 4.36 -871.14 -3.80 -24.11 16 14 C 0.06 1.89 4.88 86.33 0.42 2.31 16 15 C -0.12 -3.38 4.71 30.66 0.14 -3.23 16 16 C 0.17 4.72 0.57 -11.45 -0.01 4.71 16 17 C -0.09 -3.07 4.72 30.65 0.14 -2.93 16 18 C 0.07 2.64 4.50 86.33 0.39 3.03 16 19 O -0.38 -10.41 9.00 -148.98 -1.34 -11.75 16 20 C 0.05 0.88 6.72 71.96 0.48 1.37 16 21 C -0.11 -1.79 6.00 29.84 0.18 -1.62 16 22 C -0.09 -1.85 5.78 -19.85 -0.11 -1.96 16 23 C -0.12 -2.18 9.67 22.31 0.22 -1.97 16 24 C -0.12 -2.11 10.05 22.23 0.22 -1.88 16 25 C -0.13 -2.72 10.05 22.23 0.22 -2.50 16 26 C -0.12 -3.12 8.95 22.32 0.20 -2.92 16 27 C -0.12 -2.97 4.76 -19.86 -0.09 -3.06 16 28 H 0.06 1.99 6.65 -2.38 -0.02 1.97 16 29 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 1.68 6.52 -2.39 -0.02 1.67 16 31 H 0.00 -0.13 6.05 -2.38 -0.01 -0.14 16 32 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 33 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 34 H 0.04 1.17 6.32 -2.38 -0.02 1.15 16 35 H 0.07 2.17 8.08 -2.39 -0.02 2.15 16 36 H 0.08 1.92 6.39 -2.39 -0.02 1.91 16 37 H 0.07 2.10 8.04 -2.38 -0.02 2.08 16 38 H 0.08 2.69 6.43 -2.39 -0.02 2.67 16 39 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.03 1.28 6.21 -2.39 -0.01 1.27 16 41 H 0.05 2.44 5.93 -2.39 -0.01 2.42 16 42 H 0.06 1.10 6.15 -2.39 -0.01 1.09 16 43 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.09 1.37 8.14 -2.39 -0.02 1.36 16 45 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 47 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 48 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 49 H 0.12 3.15 6.46 -2.91 -0.02 3.13 16 Total: -1.00 -67.57 364.62 2.04 -65.53 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.93 Total: 18.61 kcal Atomic # 6 Polarization: -42.00 SS G_CDS: 3.94 Total: -38.06 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -3.51 Total: -82.17 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -1.34 Total: -11.75 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -67.57 2.04 -65.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411887219.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.438 kcal (2) G-P(sol) polarization free energy of solvation -67.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds