Wall clock time and date at job start Tue Mar 31 2020 11:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34780 * 120.00229 * 2 1 4 4 O 1.21279 * 120.00031 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.99563 * 0.02562 * 3 2 1 6 6 C 1.53001 * 109.47045 * 179.97438 * 5 3 2 7 7 C 1.50699 * 109.47410 * 179.97438 * 6 5 3 8 8 H 1.08003 * 119.99716 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00254 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99726 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00084 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46866 * 89.99723 * 11 9 7 13 13 H 1.48488 * 109.46963 * 209.99928 * 11 9 7 14 14 H 1.48505 * 109.46871 * 330.00174 * 11 9 7 15 15 C 1.46499 * 120.00225 * 180.02562 * 2 1 3 16 16 H 1.08996 * 109.47508 * 179.97438 * 15 2 1 17 17 C 1.53006 * 109.46868 * 59.99572 * 15 2 1 18 18 C 1.53007 * 109.46852 * 180.02562 * 17 15 2 19 19 C 1.52993 * 109.47011 * 60.00125 * 18 17 15 20 20 C 1.52995 * 109.47353 * 299.99986 * 19 18 17 21 21 C 1.52996 * 109.47356 * 60.00109 * 20 19 18 22 22 H 1.08996 * 109.47223 * 60.00114 * 21 20 19 23 23 C 1.50705 * 109.47336 * 180.02562 * 21 20 19 24 24 C 1.38240 * 119.99502 * 59.72780 * 23 21 20 25 25 C 1.38238 * 119.99502 * 179.74624 * 24 23 21 26 26 C 1.38235 * 119.99903 * 0.52571 * 25 24 23 27 27 C 1.38243 * 120.00102 * 359.74977 * 26 25 24 28 28 C 1.38228 * 119.99974 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47391 * 89.99442 * 1 2 3 30 30 H 1.09001 * 109.46813 * 329.99499 * 1 2 3 31 31 H 1.09004 * 109.47041 * 209.99626 * 1 2 3 32 32 H 1.09004 * 109.47017 * 299.99442 * 5 3 2 33 33 H 1.09002 * 109.47507 * 59.99434 * 5 3 2 34 34 H 1.09004 * 109.47016 * 299.99759 * 6 5 3 35 35 H 1.09002 * 109.47172 * 59.99545 * 6 5 3 36 36 H 0.96998 * 119.99788 * 180.02562 * 10 9 7 37 37 H 1.08993 * 109.47519 * 299.99954 * 17 15 2 38 38 H 1.09007 * 109.47040 * 60.00609 * 17 15 2 39 39 H 1.09007 * 109.46860 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.47143 * 299.99895 * 18 17 15 41 41 H 1.08993 * 109.47316 * 60.00315 * 19 18 17 42 42 H 1.09002 * 109.46955 * 180.02562 * 19 18 17 43 43 H 1.09003 * 109.47134 * 180.02562 * 20 19 18 44 44 H 1.09005 * 109.46819 * 300.00242 * 20 19 18 45 45 H 1.08000 * 120.00243 * 359.97438 * 24 23 21 46 46 H 1.07999 * 120.00144 * 180.29272 * 25 24 23 47 47 H 1.07993 * 120.00315 * 179.76971 * 26 25 24 48 48 H 1.07997 * 119.99815 * 180.02562 * 27 26 25 49 49 H 1.08003 * 120.00375 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3796 3.6352 0.0011 7 6 1.6262 4.9403 0.0011 8 1 0.5461 4.9403 0.0003 9 6 2.3155 6.1344 0.0020 10 7 3.6307 6.1344 0.0025 11 14 1.3815 7.7522 0.0012 12 1 1.1325 8.1805 1.4011 13 1 2.1848 8.7871 -0.6977 14 1 0.0847 7.5746 -0.7003 15 6 2.1975 -1.2687 -0.0006 16 1 3.2691 -1.0696 -0.0009 17 6 1.8278 -2.0705 -1.2502 18 6 2.5924 -3.3958 -1.2504 19 6 2.2223 -4.1983 -0.0016 20 6 2.5919 -3.3966 1.2480 21 6 1.8274 -2.0713 1.2483 22 1 0.7557 -2.2701 1.2481 23 6 2.1919 -1.2813 2.4788 24 6 3.5062 -0.9142 2.7001 25 6 3.8398 -0.1850 3.8262 26 6 2.8609 0.1676 4.7364 27 6 1.5475 -0.2045 4.5179 28 6 1.2131 -0.9287 3.3890 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 0.8900 0.5139 31 1 -0.3633 -0.8901 0.5138 32 1 0.7585 2.5302 -0.8892 33 1 0.7590 2.5298 0.8908 34 1 3.0063 3.5771 0.8911 35 1 3.0063 3.5779 -0.8889 36 1 4.1157 6.9744 0.0035 37 1 0.7562 -2.2697 -1.2502 38 1 2.0912 -1.4985 -2.1400 39 1 2.3294 -3.9668 -2.1409 40 1 3.6642 -3.1970 -1.2502 41 1 1.1507 -4.3972 -0.0018 42 1 2.7673 -5.1423 -0.0015 43 1 2.3286 -3.9686 2.1377 44 1 3.6637 -3.1977 1.2482 45 1 4.2717 -1.1938 1.9915 46 1 4.8657 0.1060 3.9968 47 1 3.1220 0.7340 5.6180 48 1 0.7828 0.0713 5.2288 49 1 0.1870 -1.2192 3.2180 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416004315.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:14 Heat of formation + Delta-G solvation = -38.310311 kcal Electronic energy + Delta-G solvation = -27426.106631 eV Core-core repulsion = 23930.670224 eV Total energy + Delta-G solvation = -3495.436407 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -40.49241 -38.76574 -37.64767 -34.71494 -33.43099 -32.66298 -31.15477 -30.74144 -29.87546 -28.53949 -26.58922 -25.60291 -23.46493 -22.80967 -22.46796 -21.16799 -20.84106 -19.43757 -18.45535 -16.95107 -16.78630 -16.12714 -15.59197 -15.28869 -15.20138 -14.87859 -14.41999 -14.27331 -14.09880 -13.84818 -13.47693 -13.23272 -13.10607 -12.84137 -12.76659 -12.47157 -12.19797 -12.13088 -12.11065 -11.96495 -11.40463 -11.34822 -11.20908 -11.05497 -10.92261 -10.90006 -10.68412 -10.55642 -10.39442 -10.27057 -9.89031 -9.56029 -9.10023 -8.88544 -8.72181 -8.55948 -8.29636 -8.21117 -5.92384 -3.96340 1.53415 1.59490 3.33694 3.35135 3.36841 3.41480 3.44354 3.94643 4.42920 4.50080 4.60070 4.77866 4.90894 5.03605 5.07274 5.10740 5.19231 5.21679 5.28986 5.33810 5.37011 5.39171 5.42513 5.49927 5.56720 5.63526 5.65680 5.71500 5.79334 5.83771 5.90258 5.95236 5.98038 6.03521 6.13736 6.20100 6.23127 6.28961 6.31532 6.33457 6.63046 6.70956 6.76983 6.88689 6.99894 7.17971 7.78679 7.86143 7.92521 8.12110 8.43749 8.86861 9.12410 9.66791 11.18610 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014321 B = 0.003909 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.726547 B = 7160.648513 C = 8192.432819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.620 5.620 3 C 0.515 3.485 4 O -0.532 6.532 5 C -0.127 4.127 6 C 0.039 3.961 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.058 3.942 10 N -0.890 5.890 11 Si 0.891 3.109 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.148 3.852 16 H 0.100 0.900 17 C -0.127 4.127 18 C -0.118 4.118 19 C -0.119 4.119 20 C -0.108 4.108 21 C -0.056 4.056 22 H 0.078 0.922 23 C -0.069 4.069 24 C -0.101 4.101 25 C -0.113 4.113 26 C -0.124 4.124 27 C -0.121 4.121 28 C -0.118 4.118 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.260 0.740 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.117 0.883 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.079 -22.395 3.959 23.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.354 5.354 3 C 0.305 3.695 4 O -0.407 6.407 5 C -0.167 4.167 6 C 0.002 3.998 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.143 4.143 10 N -0.528 5.528 11 Si 0.719 3.281 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C 0.045 3.955 16 H 0.118 0.882 17 C -0.165 4.165 18 C -0.156 4.156 19 C -0.156 4.156 20 C -0.146 4.146 21 C -0.075 4.075 22 H 0.096 0.904 23 C -0.069 4.069 24 C -0.119 4.119 25 C -0.131 4.131 26 C -0.142 4.142 27 C -0.139 4.139 28 C -0.136 4.136 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.041 0.959 35 H 0.040 0.960 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.135 0.865 46 H 0.137 0.863 47 H 0.136 0.864 48 H 0.135 0.865 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.264 -22.240 3.949 23.193 hybrid contribution -0.633 1.081 0.025 1.253 sum -5.896 -21.160 3.974 22.322 Atomic orbital electron populations 1.21674 0.80456 1.02769 1.01276 1.47967 1.06393 1.05536 1.75553 1.21477 0.88426 0.85445 0.74155 1.90631 1.14352 1.87139 1.48617 1.21855 1.00643 0.92204 1.01976 1.18874 0.93143 0.89371 0.98437 1.21228 0.92871 0.91079 1.51183 0.92724 1.25012 0.94796 0.99130 0.95369 1.70000 1.06034 1.26472 1.50342 0.86617 0.79809 0.83642 0.78047 1.20702 1.21233 1.19895 1.20995 0.98749 0.83091 0.92703 0.88177 1.21892 1.00469 0.95975 0.98209 1.21515 1.00617 0.95646 0.97787 1.21554 1.01326 0.98242 0.94514 1.21574 1.00480 0.94649 0.97931 1.20533 1.00516 0.94093 0.92348 0.90416 1.19649 0.93478 0.98463 0.95324 1.20927 0.95916 0.98068 0.96959 1.21121 0.99516 0.97871 0.94579 1.21105 0.93322 1.00116 0.99616 1.21053 0.96322 0.98782 0.97730 1.20919 0.98459 0.99533 0.94653 0.93120 0.90724 0.91885 0.90573 0.90547 0.95945 0.95987 0.93021 0.91781 0.91418 0.91805 0.91700 0.91978 0.91866 0.91627 0.91496 0.86489 0.86316 0.86439 0.86479 0.86766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 9.30 59.85 0.56 1.50 16 2 N -0.62 -9.25 2.34 -173.93 -0.41 -9.66 16 3 C 0.51 10.32 7.67 -10.98 -0.08 10.23 16 4 O -0.53 -12.69 15.31 5.56 0.09 -12.60 16 5 C -0.13 -2.71 4.19 -27.88 -0.12 -2.82 16 6 C 0.04 1.09 4.26 -27.88 -0.12 0.97 16 7 C -0.53 -15.21 9.11 -34.44 -0.31 -15.53 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -27.82 13.29 55.43 0.74 -27.09 16 11 Si 0.89 21.97 29.54 -169.99 -5.02 16.94 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.15 1.92 1.79 -67.93 -0.12 1.80 16 16 H 0.10 1.59 6.16 -51.93 -0.32 1.27 16 17 C -0.13 -1.34 5.20 -26.72 -0.14 -1.48 16 18 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 19 C -0.12 -0.92 5.92 -26.74 -0.16 -1.08 16 20 C -0.11 -0.99 5.01 -26.74 -0.13 -1.12 16 21 C -0.06 -0.61 1.74 -91.77 -0.16 -0.76 16 22 H 0.08 0.77 6.40 -51.93 -0.33 0.43 16 23 C -0.07 -0.90 4.38 -104.62 -0.46 -1.36 16 24 C -0.10 -1.46 8.71 -39.58 -0.34 -1.80 16 25 C -0.11 -1.63 10.05 -39.58 -0.40 -2.03 16 26 C -0.12 -1.68 10.05 -39.58 -0.40 -2.07 16 27 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 28 C -0.12 -1.47 9.67 -39.59 -0.38 -1.86 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.89 6.44 -51.93 -0.33 0.55 16 31 H 0.06 0.58 6.42 -51.93 -0.33 0.25 16 32 H 0.08 1.50 8.11 -51.93 -0.42 1.08 16 33 H 0.08 1.53 7.40 -51.93 -0.38 1.15 16 34 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 38 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 39 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.65 7.37 -51.93 -0.38 0.27 16 45 H 0.12 1.67 7.10 -52.49 -0.37 1.30 16 46 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 47 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 48 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 49 H 0.11 1.19 7.95 -52.48 -0.42 0.77 16 LS Contribution 384.72 15.07 5.80 5.80 Total: -1.00 -34.17 384.72 -10.54 -44.71 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -8.31 Total: 0.82 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -3.42 Total: -18.92 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.33 Total: -36.75 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.09 Total: -12.60 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.17 -10.54 -44.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416004315.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.395 kcal (2) G-P(sol) polarization free energy of solvation -34.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds