Wall clock time and date at job start Tue Mar 31 2020 11:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34780 * 120.00229 * 2 1 4 4 O 1.21279 * 120.00031 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.99563 * 0.02562 * 3 2 1 6 6 C 1.53001 * 109.47045 * 179.97438 * 5 3 2 7 7 C 1.50699 * 109.47410 * 179.97438 * 6 5 3 8 8 H 1.08003 * 119.99716 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00254 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99726 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00084 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46866 * 89.99723 * 11 9 7 13 13 H 1.48488 * 109.46963 * 209.99928 * 11 9 7 14 14 H 1.48505 * 109.46871 * 330.00174 * 11 9 7 15 15 C 1.46499 * 120.00225 * 180.02562 * 2 1 3 16 16 H 1.08996 * 109.47508 * 179.97438 * 15 2 1 17 17 C 1.53006 * 109.46868 * 59.99572 * 15 2 1 18 18 C 1.53007 * 109.46852 * 180.02562 * 17 15 2 19 19 C 1.52993 * 109.47011 * 60.00125 * 18 17 15 20 20 C 1.52995 * 109.47353 * 299.99986 * 19 18 17 21 21 C 1.52996 * 109.47356 * 60.00109 * 20 19 18 22 22 H 1.08996 * 109.47223 * 60.00114 * 21 20 19 23 23 C 1.50705 * 109.47336 * 180.02562 * 21 20 19 24 24 C 1.38240 * 119.99502 * 59.72780 * 23 21 20 25 25 C 1.38238 * 119.99502 * 179.74624 * 24 23 21 26 26 C 1.38235 * 119.99903 * 0.52571 * 25 24 23 27 27 C 1.38243 * 120.00102 * 359.74977 * 26 25 24 28 28 C 1.38228 * 119.99974 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47391 * 89.99442 * 1 2 3 30 30 H 1.09001 * 109.46813 * 329.99499 * 1 2 3 31 31 H 1.09004 * 109.47041 * 209.99626 * 1 2 3 32 32 H 1.09004 * 109.47017 * 299.99442 * 5 3 2 33 33 H 1.09002 * 109.47507 * 59.99434 * 5 3 2 34 34 H 1.09004 * 109.47016 * 299.99759 * 6 5 3 35 35 H 1.09002 * 109.47172 * 59.99545 * 6 5 3 36 36 H 0.96998 * 119.99788 * 180.02562 * 10 9 7 37 37 H 1.08993 * 109.47519 * 299.99954 * 17 15 2 38 38 H 1.09007 * 109.47040 * 60.00609 * 17 15 2 39 39 H 1.09007 * 109.46860 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.47143 * 299.99895 * 18 17 15 41 41 H 1.08993 * 109.47316 * 60.00315 * 19 18 17 42 42 H 1.09002 * 109.46955 * 180.02562 * 19 18 17 43 43 H 1.09003 * 109.47134 * 180.02562 * 20 19 18 44 44 H 1.09005 * 109.46819 * 300.00242 * 20 19 18 45 45 H 1.08000 * 120.00243 * 359.97438 * 24 23 21 46 46 H 1.07999 * 120.00144 * 180.29272 * 25 24 23 47 47 H 1.07993 * 120.00315 * 179.76971 * 26 25 24 48 48 H 1.07997 * 119.99815 * 180.02562 * 27 26 25 49 49 H 1.08003 * 120.00375 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3796 3.6352 0.0011 7 6 1.6262 4.9403 0.0011 8 1 0.5461 4.9403 0.0003 9 6 2.3155 6.1344 0.0020 10 7 3.6307 6.1344 0.0025 11 14 1.3815 7.7522 0.0012 12 1 1.1325 8.1805 1.4011 13 1 2.1848 8.7871 -0.6977 14 1 0.0847 7.5746 -0.7003 15 6 2.1975 -1.2687 -0.0006 16 1 3.2691 -1.0696 -0.0009 17 6 1.8278 -2.0705 -1.2502 18 6 2.5924 -3.3958 -1.2504 19 6 2.2223 -4.1983 -0.0016 20 6 2.5919 -3.3966 1.2480 21 6 1.8274 -2.0713 1.2483 22 1 0.7557 -2.2701 1.2481 23 6 2.1919 -1.2813 2.4788 24 6 3.5062 -0.9142 2.7001 25 6 3.8398 -0.1850 3.8262 26 6 2.8609 0.1676 4.7364 27 6 1.5475 -0.2045 4.5179 28 6 1.2131 -0.9287 3.3890 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 0.8900 0.5139 31 1 -0.3633 -0.8901 0.5138 32 1 0.7585 2.5302 -0.8892 33 1 0.7590 2.5298 0.8908 34 1 3.0063 3.5771 0.8911 35 1 3.0063 3.5779 -0.8889 36 1 4.1157 6.9744 0.0035 37 1 0.7562 -2.2697 -1.2502 38 1 2.0912 -1.4985 -2.1400 39 1 2.3294 -3.9668 -2.1409 40 1 3.6642 -3.1970 -1.2502 41 1 1.1507 -4.3972 -0.0018 42 1 2.7673 -5.1423 -0.0015 43 1 2.3286 -3.9686 2.1377 44 1 3.6637 -3.1977 1.2482 45 1 4.2717 -1.1938 1.9915 46 1 4.8657 0.1060 3.9968 47 1 3.1220 0.7340 5.6180 48 1 0.7828 0.0713 5.2288 49 1 0.1870 -1.2192 3.2180 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416004315.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:12 Heat of formation + Delta-G solvation = -56.343066 kcal Electronic energy + Delta-G solvation = -27426.888590 eV Core-core repulsion = 23930.670224 eV Total energy + Delta-G solvation = -3496.218366 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.61190 -40.06032 -38.70836 -35.94105 -35.58762 -33.58956 -33.04318 -31.77224 -30.94888 -29.54223 -27.87265 -27.37303 -24.52141 -24.13015 -23.48455 -22.69666 -21.78190 -20.39925 -19.86943 -18.77237 -17.88859 -17.61465 -16.99537 -16.70919 -16.46403 -16.23378 -15.87295 -15.28424 -15.04309 -14.86174 -14.67345 -14.45479 -14.28974 -14.14206 -13.90338 -13.74958 -13.67583 -13.35781 -13.31798 -13.02976 -12.98591 -12.81214 -12.47428 -12.27251 -12.25117 -12.06114 -11.93512 -11.76840 -11.59767 -11.47755 -11.32448 -11.26480 -11.13585 -10.58016 -10.54128 -9.77572 -9.64777 -9.38792 -8.18753 -6.33326 0.49614 0.54059 1.40402 1.43689 1.54630 1.78007 2.12432 2.42606 2.90156 3.13953 3.54861 3.72758 3.92350 3.99929 4.07355 4.13828 4.19356 4.22909 4.27855 4.33999 4.34972 4.45449 4.47395 4.52760 4.53699 4.57854 4.66494 4.70311 4.78786 4.87010 4.93812 4.95306 5.09340 5.10975 5.17164 5.19131 5.21155 5.22469 5.31851 5.39195 5.46789 5.52198 5.60423 5.61258 5.65742 5.71597 5.80781 5.84933 6.16655 6.16734 6.48627 6.84948 7.35520 7.38374 8.94063 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014321 B = 0.003909 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.726547 B = 7160.648513 C = 8192.432819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.605 5.605 3 C 0.510 3.490 4 O -0.587 6.587 5 C -0.114 4.114 6 C 0.049 3.951 7 C -0.543 4.543 8 H 0.075 0.925 9 C -0.006 4.006 10 N -0.938 5.938 11 Si 0.974 3.026 12 H -0.271 1.271 13 H -0.285 1.285 14 H -0.254 1.254 15 C 0.146 3.854 16 H 0.060 0.940 17 C -0.120 4.120 18 C -0.116 4.116 19 C -0.111 4.111 20 C -0.106 4.106 21 C -0.046 4.046 22 H 0.105 0.895 23 C -0.075 4.075 24 C -0.122 4.122 25 C -0.140 4.140 26 C -0.139 4.139 27 C -0.126 4.126 28 C -0.120 4.120 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.095 0.905 34 H -0.024 1.024 35 H -0.022 1.022 36 H 0.263 0.737 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.082 0.918 40 H 0.048 0.952 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.049 0.951 45 H 0.102 0.898 46 H 0.115 0.885 47 H 0.130 0.870 48 H 0.143 0.857 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.535 -23.818 4.011 26.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.338 5.338 3 C 0.300 3.700 4 O -0.467 6.467 5 C -0.154 4.154 6 C 0.011 3.989 7 C -0.581 4.581 8 H 0.093 0.907 9 C -0.203 4.203 10 N -0.578 5.578 11 Si 0.798 3.202 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.178 1.178 15 C 0.043 3.957 16 H 0.078 0.922 17 C -0.159 4.159 18 C -0.154 4.154 19 C -0.149 4.149 20 C -0.144 4.144 21 C -0.065 4.065 22 H 0.123 0.877 23 C -0.075 4.075 24 C -0.140 4.140 25 C -0.158 4.158 26 C -0.157 4.157 27 C -0.144 4.144 28 C -0.137 4.137 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.113 0.887 34 H -0.005 1.005 35 H -0.003 1.003 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.068 0.932 45 H 0.120 0.880 46 H 0.133 0.867 47 H 0.148 0.852 48 H 0.161 0.839 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.779 -23.721 3.999 25.967 hybrid contribution 0.804 1.477 0.013 1.682 sum -8.974 -22.244 4.012 24.319 Atomic orbital electron populations 1.22041 0.77551 1.04525 1.03112 1.47912 1.08118 1.04592 1.73132 1.21229 0.87673 0.86688 0.74416 1.90618 1.16568 1.87962 1.51543 1.21595 0.99206 0.90754 1.03816 1.18621 0.93529 0.92558 0.94185 1.21698 0.93909 0.91598 1.50880 0.90710 1.26147 0.95701 1.03953 0.94528 1.70190 1.08383 1.27777 1.51441 0.85319 0.78727 0.77626 0.78575 1.19658 1.21087 1.17760 1.21119 0.96527 0.82620 0.95417 0.92194 1.21851 1.02195 0.96105 0.95705 1.21522 0.99452 0.95016 0.99432 1.21529 1.02682 0.98068 0.92596 1.21567 0.99303 0.94042 0.99502 1.20539 1.02132 0.94006 0.89845 0.87705 1.19930 0.92797 0.98381 0.96389 1.20995 0.96943 0.99142 0.96930 1.21307 1.00055 0.98916 0.95490 1.21367 0.93879 1.00521 0.99926 1.21435 0.96315 0.98207 0.98415 1.21305 0.99675 0.98718 0.94032 0.91215 0.90775 0.88413 0.88396 0.88691 1.00538 1.00320 0.92883 0.89194 0.93364 0.89952 0.93345 0.90008 0.90540 0.90404 0.93248 0.87972 0.86698 0.85189 0.83926 0.83580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.33 9.30 127.77 1.19 2.52 16 2 N -0.61 -17.48 2.34 -822.58 -1.92 -19.40 16 3 C 0.51 21.12 7.67 87.66 0.67 21.79 16 4 O -0.59 -30.30 15.31 -3.02 -0.05 -30.34 16 5 C -0.11 -4.91 4.19 29.85 0.13 -4.79 16 6 C 0.05 2.84 4.26 29.85 0.13 2.97 16 7 C -0.54 -31.87 9.11 25.60 0.23 -31.64 16 8 H 0.07 3.99 7.74 -2.91 -0.02 3.97 16 9 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 10 N -0.94 -60.94 13.29 21.45 0.28 -60.66 16 11 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 13 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 14 H -0.25 -10.86 7.11 99.48 0.71 -10.15 16 15 C 0.15 3.72 1.79 44.99 0.08 3.80 16 16 H 0.06 2.05 6.16 -2.39 -0.01 2.03 16 17 C -0.12 -2.32 5.20 30.60 0.16 -2.16 16 18 C -0.12 -1.81 5.92 30.59 0.18 -1.63 16 19 C -0.11 -1.37 5.92 30.59 0.18 -1.19 16 20 C -0.11 -1.75 5.01 30.59 0.15 -1.60 16 21 C -0.05 -0.91 1.74 -11.54 -0.02 -0.93 16 22 H 0.10 1.53 6.40 -2.39 -0.02 1.52 16 23 C -0.07 -1.90 4.38 -19.86 -0.09 -1.99 16 24 C -0.12 -3.78 8.71 22.27 0.19 -3.59 16 25 C -0.14 -4.36 10.05 22.27 0.22 -4.14 16 26 C -0.14 -3.84 10.05 22.27 0.22 -3.62 16 27 C -0.13 -3.02 10.05 22.27 0.22 -2.80 16 28 C -0.12 -2.70 9.67 22.27 0.22 -2.49 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 30 H 0.07 1.48 6.44 -2.39 -0.02 1.47 16 31 H 0.10 1.24 6.42 -2.38 -0.02 1.22 16 32 H 0.10 3.75 8.11 -2.39 -0.02 3.73 16 33 H 0.09 3.71 7.40 -2.39 -0.02 3.69 16 34 H -0.02 -1.59 8.10 -2.39 -0.02 -1.60 16 35 H -0.02 -1.43 8.10 -2.39 -0.02 -1.45 16 36 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 37 H 0.09 1.29 7.67 -2.39 -0.02 1.28 16 38 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.05 0.99 7.37 -2.38 -0.02 0.97 16 45 H 0.10 3.33 7.10 -2.91 -0.02 3.31 16 46 H 0.11 3.45 8.06 -2.91 -0.02 3.43 16 47 H 0.13 3.10 8.06 -2.91 -0.02 3.08 16 48 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 49 H 0.15 2.33 7.95 -2.91 -0.02 2.30 16 Total: -1.00 -80.84 384.72 5.79 -75.06 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.91 Total: 19.58 kcal Atomic # 6 Polarization: -35.89 SS G_CDS: 4.54 Total: -31.35 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -1.64 Total: -80.06 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.05 Total: -30.34 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -80.84 5.79 -75.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416004315.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.712 kcal (2) G-P(sol) polarization free energy of solvation -80.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds