Wall clock time and date at job start Tue Mar 31 2020 10:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.45383 * 2 1 4 4 C 1.53040 * 109.44991 * 240.03225 * 2 1 3 5 5 C 1.53194 * 109.30887 * 178.61818 * 4 2 1 6 6 N 1.46921 * 108.77577 * 54.63511 * 5 4 2 7 7 C 1.34778 * 120.63221 * 126.36355 * 6 5 4 8 8 O 1.21281 * 120.00092 * 184.90290 * 7 6 5 9 9 C 1.50699 * 119.99932 * 4.91062 * 7 6 5 10 10 C 1.53001 * 109.47329 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.46766 * 304.99398 * 10 9 7 12 12 C 1.50696 * 109.47446 * 64.99779 * 10 9 7 13 13 H 1.08001 * 119.99666 * 31.76231 * 12 10 9 14 14 C 1.37879 * 120.00392 * 211.77126 * 12 10 9 15 15 N 1.31516 * 119.99427 * 5.92904 * 14 12 10 16 16 Si 1.86798 * 120.00178 * 185.93278 * 14 12 10 17 17 H 1.48497 * 109.47064 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.46927 * 119.99615 * 16 14 12 19 19 H 1.48503 * 109.46834 * 239.99705 * 16 14 12 20 20 C 1.50697 * 109.47095 * 185.00014 * 10 9 7 21 21 C 1.38243 * 120.00090 * 298.47356 * 20 10 9 22 22 C 1.38237 * 119.99976 * 179.76836 * 21 20 10 23 23 C 1.38231 * 119.99870 * 0.50495 * 22 21 20 24 24 C 1.38230 * 120.00315 * 359.75079 * 23 22 21 25 25 C 1.38236 * 120.00263 * 118.75150 * 20 10 9 26 26 C 1.46928 * 118.74234 * 306.39115 * 6 5 4 27 27 H 1.09005 * 109.69835 * 293.75266 * 26 6 5 28 28 C 1.52995 * 109.58977 * 173.39556 * 26 6 5 29 29 C 1.53037 * 109.46061 * 119.96722 * 2 1 3 30 30 H 1.08993 * 109.47349 * 300.00203 * 1 2 3 31 31 H 1.08996 * 109.47168 * 60.00754 * 1 2 3 32 32 H 1.09007 * 109.46558 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.49710 * 298.56976 * 4 2 1 34 34 H 1.09002 * 109.49956 * 58.66706 * 4 2 1 35 35 H 1.08993 * 109.59042 * 294.84690 * 5 4 2 36 36 H 1.09002 * 109.70121 * 174.48895 * 5 4 2 37 37 H 1.09003 * 109.47350 * 299.99687 * 9 7 6 38 38 H 1.09002 * 109.47294 * 59.99620 * 9 7 6 39 39 H 0.96999 * 119.99478 * 180.02562 * 15 14 12 40 40 H 1.08000 * 119.99410 * 0.02562 * 21 20 10 41 41 H 1.07996 * 119.99504 * 180.23120 * 22 21 20 42 42 H 1.08003 * 120.00219 * 179.72295 * 23 22 21 43 43 H 1.07998 * 120.00162 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.00184 * 359.97438 * 25 20 10 45 45 H 1.08998 * 109.47003 * 303.83899 * 28 26 6 46 46 H 1.09000 * 109.47341 * 63.84224 * 28 26 6 47 47 H 1.09000 * 109.47076 * 183.84057 * 28 26 6 48 48 H 1.09001 * 109.49601 * 301.33141 * 29 2 1 49 49 H 1.09001 * 109.49558 * 61.39268 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7208 -1.2501 5 6 3.5712 -0.6888 -1.2644 6 7 4.0677 -1.2491 -0.0002 7 6 4.9610 -2.2583 -0.0002 8 8 5.2960 -2.7716 1.0462 9 6 5.5438 -2.7486 -1.3006 10 6 6.5236 -3.8903 -1.0221 11 1 7.2757 -3.5572 -0.3070 12 6 5.7746 -5.0672 -0.4519 13 1 4.7532 -5.2528 -0.7496 14 6 6.3933 -5.9069 0.4499 15 7 7.5939 -5.6168 0.9015 16 14 5.5262 -7.4564 1.0300 17 1 4.1956 -7.5527 0.3778 18 1 6.3416 -8.6441 0.6699 19 1 5.3520 -7.4038 2.5038 20 6 7.1976 -4.2984 -2.3066 21 6 6.4444 -4.7886 -3.3571 22 6 7.0623 -5.1584 -4.5371 23 6 8.4344 -5.0479 -4.6630 24 6 9.1882 -4.5627 -3.6108 25 6 8.5698 -4.1880 -2.4325 26 6 3.5714 -0.6888 1.2641 27 1 3.9145 0.3404 1.3697 28 6 4.0911 -1.5253 2.4349 29 6 2.0399 -0.7208 1.2500 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 1.6974 -1.7556 -1.2383 34 1 1.6570 -0.2208 -2.1399 35 1 3.9142 0.3406 -1.3675 36 1 3.9434 -1.2834 -2.0987 37 1 4.7418 -3.1070 -1.9460 38 1 6.0697 -1.9314 -1.7942 39 1 8.0293 -6.2077 1.5357 40 1 5.3728 -4.8787 -3.2572 41 1 6.4734 -5.5379 -5.3590 42 1 8.9177 -5.3410 -5.5833 43 1 10.2602 -4.4767 -3.7090 44 1 9.1588 -3.8088 -1.6105 45 1 3.7983 -2.5660 2.2962 46 1 5.1782 -1.4562 2.4766 47 1 3.6673 -1.1497 3.3663 48 1 1.6573 -0.2207 2.1398 49 1 1.6972 -1.7554 1.2386 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425035463.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:07 Heat of formation + Delta-G solvation = -15.089115 kcal Electronic energy + Delta-G solvation = -27409.511163 eV Core-core repulsion = 23915.081703 eV Total energy + Delta-G solvation = -3494.429460 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.02795 -38.39362 -37.21044 -34.18430 -33.54028 -32.59014 -31.29550 -30.00555 -28.96906 -28.07197 -26.45635 -25.47169 -23.21680 -22.94391 -21.70934 -21.39926 -20.28970 -19.55771 -18.23782 -16.57873 -16.22029 -15.71217 -15.54326 -15.01663 -14.53357 -14.49568 -14.23914 -14.04534 -13.86516 -13.48623 -13.15779 -13.02279 -12.56728 -12.45282 -12.25092 -12.18555 -11.95269 -11.89604 -11.81153 -11.55080 -11.52310 -11.32771 -10.92855 -10.87633 -10.78568 -10.64713 -10.51528 -10.41833 -10.28049 -10.24899 -10.01900 -9.35640 -9.01677 -8.35907 -8.10711 -8.04304 -7.99141 -7.60278 -5.89857 -3.88179 2.28816 2.34892 3.37992 3.45282 3.47403 3.50748 3.61027 4.53796 4.70920 4.72571 4.75258 4.81405 5.14209 5.27538 5.35887 5.44134 5.48226 5.55126 5.57204 5.66336 5.71072 5.73402 5.74722 5.80812 5.83662 5.85112 5.99704 6.07270 6.09951 6.11448 6.13898 6.18605 6.23917 6.30288 6.39058 6.41627 6.55608 6.64292 6.79219 6.87873 6.95875 7.05381 7.23183 7.31320 7.46540 7.55860 7.91789 7.95705 8.05783 8.12959 8.42417 9.11336 9.19287 9.72273 11.20232 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011977 B = 0.004688 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.335921 B = 5970.827671 C = 7232.277800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 H 0.068 0.932 4 C -0.130 4.130 5 C 0.112 3.888 6 N -0.627 5.627 7 C 0.514 3.486 8 O -0.483 6.483 9 C -0.121 4.121 10 C 0.078 3.922 11 H 0.074 0.926 12 C -0.488 4.488 13 H 0.049 0.951 14 C 0.078 3.922 15 N -0.879 5.879 16 Si 0.883 3.117 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.285 1.285 20 C -0.023 4.023 21 C -0.116 4.116 22 C -0.132 4.132 23 C -0.156 4.156 24 C -0.128 4.128 25 C -0.120 4.120 26 C 0.148 3.852 27 H 0.058 0.942 28 C -0.135 4.135 29 C -0.126 4.126 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.257 0.743 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.114 0.886 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.030 0.970 48 H 0.066 0.934 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.574 11.699 -5.776 15.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.086 0.914 4 C -0.169 4.169 5 C -0.012 4.012 6 N -0.366 5.366 7 C 0.303 3.697 8 O -0.354 6.354 9 C -0.161 4.161 10 C 0.059 3.941 11 H 0.092 0.908 12 C -0.525 4.525 13 H 0.067 0.933 14 C -0.125 4.125 15 N -0.516 5.516 16 Si 0.711 3.289 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.212 1.212 20 C -0.023 4.023 21 C -0.134 4.134 22 C -0.150 4.150 23 C -0.174 4.174 24 C -0.146 4.146 25 C -0.138 4.138 26 C 0.045 3.955 27 H 0.076 0.924 28 C -0.192 4.192 29 C -0.164 4.164 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.130 0.870 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.132 0.868 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.049 0.951 48 H 0.085 0.915 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.213 11.309 -5.044 14.859 hybrid contribution -0.536 -1.012 0.215 1.166 sum -8.749 10.297 -4.829 14.349 Atomic orbital electron populations 1.21824 0.95365 1.01792 1.01318 1.21105 0.95343 0.99347 0.95186 0.91381 1.21991 0.95789 1.01428 0.97654 1.21585 0.93608 0.98828 0.87190 1.48336 1.45423 1.37249 1.05583 1.20850 0.78274 0.78090 0.92535 1.90813 1.58545 1.53749 1.32263 1.21825 1.00320 0.99786 0.94217 1.17862 0.94268 0.92146 0.89868 0.90751 1.20679 0.97872 1.09710 1.24257 0.93253 1.24792 0.94855 0.97549 0.95291 1.69912 1.14172 1.36562 1.30977 0.86695 0.79761 0.83891 0.78548 1.19983 1.21250 1.21170 1.20792 0.93167 0.93060 0.95304 1.20948 0.99770 0.99821 0.92871 1.20974 0.94632 1.01610 0.97774 1.20793 0.94248 1.03819 0.98551 1.20991 0.98691 1.00696 0.94246 1.21112 0.95091 1.01019 0.96603 1.21098 0.92671 0.96833 0.84937 0.92354 1.22215 1.02393 1.00696 0.93866 1.22086 0.95758 1.01280 0.97325 0.92872 0.92867 0.92713 0.91382 0.91225 0.92324 0.89536 0.90847 0.91964 0.93272 0.86959 0.87681 0.87813 0.87642 0.86766 0.90590 0.90754 0.95102 0.91489 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.19 37.16 0.34 -0.93 16 2 C -0.09 -0.92 2.68 -90.58 -0.24 -1.16 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.13 -1.37 5.36 -26.61 -0.14 -1.51 16 5 C 0.11 1.35 6.33 -3.71 -0.02 1.33 16 6 N -0.63 -9.89 2.97 -165.23 -0.49 -10.38 16 7 C 0.51 10.31 7.35 -10.99 -0.08 10.23 16 8 O -0.48 -11.67 10.38 5.56 0.06 -11.61 16 9 C -0.12 -2.36 3.32 -27.88 -0.09 -2.45 16 10 C 0.08 1.84 1.73 -92.93 -0.16 1.68 16 11 H 0.07 2.04 6.87 -51.93 -0.36 1.68 16 12 C -0.49 -13.05 6.45 -34.44 -0.22 -13.27 16 13 H 0.05 1.33 7.82 -52.49 -0.41 0.92 16 14 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 15 N -0.88 -25.83 12.81 55.43 0.71 -25.12 16 16 Si 0.88 22.23 29.54 -169.99 -5.02 17.21 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 20 C -0.02 -0.50 4.77 -104.62 -0.50 -1.00 16 21 C -0.12 -2.32 8.86 -39.58 -0.35 -2.67 16 22 C -0.13 -2.35 10.05 -39.58 -0.40 -2.74 16 23 C -0.16 -2.71 10.05 -39.59 -0.40 -3.10 16 24 C -0.13 -2.37 10.05 -39.58 -0.40 -2.76 16 25 C -0.12 -2.54 9.67 -39.58 -0.38 -2.92 16 26 C 0.15 2.14 3.49 -67.60 -0.24 1.90 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 C -0.13 -2.29 7.59 37.15 0.28 -2.01 16 29 C -0.13 -1.52 4.65 -26.61 -0.12 -1.64 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 1.03 5.96 -51.93 -0.31 0.72 16 37 H 0.07 1.33 7.00 -51.93 -0.36 0.97 16 38 H 0.06 1.08 8.10 -51.93 -0.42 0.66 16 39 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.11 2.17 7.70 -52.49 -0.40 1.76 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 42 H 0.10 1.50 8.06 -52.48 -0.42 1.08 16 43 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 44 H 0.11 2.46 7.95 -52.49 -0.42 2.04 16 45 H 0.08 1.52 6.77 -51.93 -0.35 1.17 16 46 H 0.07 1.45 6.72 -51.93 -0.35 1.10 16 47 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 381.02 15.07 5.74 5.74 Total: -1.00 -30.75 381.02 -10.66 -41.42 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -8.44 Total: 3.68 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -3.22 Total: -20.93 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.22 Total: -35.50 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.06 Total: -11.61 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.75 -10.66 -41.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425035463.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.326 kcal (2) G-P(sol) polarization free energy of solvation -30.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds