Wall clock time and date at job start Tue Mar 31 2020 10:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.45383 * 2 1 4 4 C 1.53040 * 109.44991 * 240.03225 * 2 1 3 5 5 C 1.53194 * 109.30887 * 178.61818 * 4 2 1 6 6 N 1.46921 * 108.77577 * 54.63511 * 5 4 2 7 7 C 1.34778 * 120.63221 * 126.36355 * 6 5 4 8 8 O 1.21281 * 120.00092 * 184.90290 * 7 6 5 9 9 C 1.50699 * 119.99932 * 4.91062 * 7 6 5 10 10 C 1.53001 * 109.47329 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.46766 * 304.99398 * 10 9 7 12 12 C 1.50696 * 109.47446 * 64.99779 * 10 9 7 13 13 H 1.08001 * 119.99666 * 31.76231 * 12 10 9 14 14 C 1.37879 * 120.00392 * 211.77126 * 12 10 9 15 15 N 1.31516 * 119.99427 * 5.92904 * 14 12 10 16 16 Si 1.86798 * 120.00178 * 185.93278 * 14 12 10 17 17 H 1.48497 * 109.47064 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.46927 * 119.99615 * 16 14 12 19 19 H 1.48503 * 109.46834 * 239.99705 * 16 14 12 20 20 C 1.50697 * 109.47095 * 185.00014 * 10 9 7 21 21 C 1.38243 * 120.00090 * 298.47356 * 20 10 9 22 22 C 1.38237 * 119.99976 * 179.76836 * 21 20 10 23 23 C 1.38231 * 119.99870 * 0.50495 * 22 21 20 24 24 C 1.38230 * 120.00315 * 359.75079 * 23 22 21 25 25 C 1.38236 * 120.00263 * 118.75150 * 20 10 9 26 26 C 1.46928 * 118.74234 * 306.39115 * 6 5 4 27 27 H 1.09005 * 109.69835 * 293.75266 * 26 6 5 28 28 C 1.52995 * 109.58977 * 173.39556 * 26 6 5 29 29 C 1.53037 * 109.46061 * 119.96722 * 2 1 3 30 30 H 1.08993 * 109.47349 * 300.00203 * 1 2 3 31 31 H 1.08996 * 109.47168 * 60.00754 * 1 2 3 32 32 H 1.09007 * 109.46558 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.49710 * 298.56976 * 4 2 1 34 34 H 1.09002 * 109.49956 * 58.66706 * 4 2 1 35 35 H 1.08993 * 109.59042 * 294.84690 * 5 4 2 36 36 H 1.09002 * 109.70121 * 174.48895 * 5 4 2 37 37 H 1.09003 * 109.47350 * 299.99687 * 9 7 6 38 38 H 1.09002 * 109.47294 * 59.99620 * 9 7 6 39 39 H 0.96999 * 119.99478 * 180.02562 * 15 14 12 40 40 H 1.08000 * 119.99410 * 0.02562 * 21 20 10 41 41 H 1.07996 * 119.99504 * 180.23120 * 22 21 20 42 42 H 1.08003 * 120.00219 * 179.72295 * 23 22 21 43 43 H 1.07998 * 120.00162 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.00184 * 359.97438 * 25 20 10 45 45 H 1.08998 * 109.47003 * 303.83899 * 28 26 6 46 46 H 1.09000 * 109.47341 * 63.84224 * 28 26 6 47 47 H 1.09000 * 109.47076 * 183.84057 * 28 26 6 48 48 H 1.09001 * 109.49601 * 301.33141 * 29 2 1 49 49 H 1.09001 * 109.49558 * 61.39268 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7208 -1.2501 5 6 3.5712 -0.6888 -1.2644 6 7 4.0677 -1.2491 -0.0002 7 6 4.9610 -2.2583 -0.0002 8 8 5.2960 -2.7716 1.0462 9 6 5.5438 -2.7486 -1.3006 10 6 6.5236 -3.8903 -1.0221 11 1 7.2757 -3.5572 -0.3070 12 6 5.7746 -5.0672 -0.4519 13 1 4.7532 -5.2528 -0.7496 14 6 6.3933 -5.9069 0.4499 15 7 7.5939 -5.6168 0.9015 16 14 5.5262 -7.4564 1.0300 17 1 4.1956 -7.5527 0.3778 18 1 6.3416 -8.6441 0.6699 19 1 5.3520 -7.4038 2.5038 20 6 7.1976 -4.2984 -2.3066 21 6 6.4444 -4.7886 -3.3571 22 6 7.0623 -5.1584 -4.5371 23 6 8.4344 -5.0479 -4.6630 24 6 9.1882 -4.5627 -3.6108 25 6 8.5698 -4.1880 -2.4325 26 6 3.5714 -0.6888 1.2641 27 1 3.9145 0.3404 1.3697 28 6 4.0911 -1.5253 2.4349 29 6 2.0399 -0.7208 1.2500 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 1.6974 -1.7556 -1.2383 34 1 1.6570 -0.2208 -2.1399 35 1 3.9142 0.3406 -1.3675 36 1 3.9434 -1.2834 -2.0987 37 1 4.7418 -3.1070 -1.9460 38 1 6.0697 -1.9314 -1.7942 39 1 8.0293 -6.2077 1.5357 40 1 5.3728 -4.8787 -3.2572 41 1 6.4734 -5.5379 -5.3590 42 1 8.9177 -5.3410 -5.5833 43 1 10.2602 -4.4767 -3.7090 44 1 9.1588 -3.8088 -1.6105 45 1 3.7983 -2.5660 2.2962 46 1 5.1782 -1.4562 2.4766 47 1 3.6673 -1.1497 3.3663 48 1 1.6573 -0.2207 2.1398 49 1 1.6972 -1.7554 1.2386 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425035463.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:06 Heat of formation + Delta-G solvation = -30.222466 kcal Electronic energy + Delta-G solvation = -27410.167395 eV Core-core repulsion = 23915.081703 eV Total energy + Delta-G solvation = -3495.085692 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.37681 -39.90189 -38.49837 -35.90129 -34.72873 -33.99267 -33.09551 -31.50609 -30.34976 -29.26403 -27.56666 -27.38229 -24.69025 -24.15315 -23.18269 -22.73932 -21.38221 -21.00401 -19.64964 -18.48692 -17.76936 -17.10381 -16.89791 -16.47201 -16.28569 -15.70306 -15.49692 -15.43114 -15.11847 -14.65856 -14.57373 -14.40807 -14.07055 -13.94173 -13.61628 -13.53528 -13.35750 -13.22481 -13.14404 -13.07549 -12.89051 -12.67625 -12.49979 -12.42672 -12.32701 -11.97734 -11.84613 -11.77926 -11.67922 -11.34630 -11.30242 -11.13931 -10.93397 -10.47799 -9.70713 -9.54739 -9.31232 -9.18698 -8.03080 -6.04643 0.77159 0.83613 1.33491 1.35759 1.43931 2.04686 2.24843 2.45271 3.17994 3.35872 3.74219 3.84096 3.87092 4.11526 4.19126 4.25155 4.34344 4.35882 4.38943 4.41947 4.52787 4.55644 4.63659 4.69401 4.71560 4.75748 4.79863 4.86327 4.92095 4.94048 4.96328 5.01591 5.09439 5.14460 5.19329 5.26184 5.28023 5.37953 5.42814 5.49410 5.52359 5.58650 5.67949 5.78800 5.83398 5.93050 5.97431 6.18818 6.42324 6.46517 6.71368 7.02895 7.56569 7.68247 9.06662 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011977 B = 0.004688 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.335921 B = 5970.827671 C = 7232.277800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 H 0.085 0.915 4 C -0.126 4.126 5 C 0.103 3.897 6 N -0.621 5.621 7 C 0.506 3.494 8 O -0.538 6.538 9 C -0.112 4.112 10 C 0.082 3.918 11 H 0.025 0.975 12 C -0.478 4.478 13 H 0.042 0.958 14 C 0.024 3.976 15 N -0.915 5.915 16 Si 0.931 3.069 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.293 1.293 20 C -0.047 4.047 21 C -0.127 4.127 22 C -0.125 4.125 23 C -0.147 4.147 24 C -0.128 4.128 25 C -0.145 4.145 26 C 0.144 3.856 27 H 0.081 0.919 28 C -0.124 4.124 29 C -0.119 4.119 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.044 0.956 33 H 0.049 0.951 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.252 0.748 40 H 0.115 0.885 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.131 0.869 44 H 0.092 0.908 45 H 0.036 0.964 46 H 0.040 0.960 47 H 0.056 0.944 48 H 0.085 0.915 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.369 13.038 -8.942 18.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 H 0.103 0.897 4 C -0.164 4.164 5 C -0.019 4.019 6 N -0.358 5.358 7 C 0.295 3.705 8 O -0.414 6.414 9 C -0.152 4.152 10 C 0.063 3.937 11 H 0.043 0.957 12 C -0.516 4.516 13 H 0.060 0.940 14 C -0.175 4.175 15 N -0.555 5.555 16 Si 0.758 3.242 17 H -0.190 1.190 18 H -0.207 1.207 19 H -0.219 1.219 20 C -0.047 4.047 21 C -0.145 4.145 22 C -0.143 4.143 23 C -0.165 4.165 24 C -0.146 4.146 25 C -0.164 4.164 26 C 0.042 3.958 27 H 0.099 0.901 28 C -0.181 4.181 29 C -0.158 4.158 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.118 0.882 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.061 0.939 40 H 0.133 0.867 41 H 0.160 0.840 42 H 0.162 0.838 43 H 0.149 0.851 44 H 0.110 0.890 45 H 0.055 0.945 46 H 0.059 0.941 47 H 0.074 0.926 48 H 0.104 0.896 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.057 12.683 -8.254 18.169 hybrid contribution 0.026 -1.337 1.124 1.747 sum -10.031 11.346 -7.129 16.739 Atomic orbital electron populations 1.21784 0.94056 1.01539 1.02536 1.21110 0.96362 0.99635 0.93480 0.89689 1.21980 0.94231 1.00878 0.99294 1.21924 0.94948 0.99881 0.85165 1.48341 1.43931 1.35810 1.07726 1.21016 0.78841 0.78778 0.91899 1.90817 1.60698 1.56071 1.33799 1.21669 0.99925 0.99070 0.94517 1.17623 0.93704 0.92440 0.89975 0.95674 1.20924 0.97407 1.09921 1.23325 0.93960 1.25452 0.95582 1.00240 0.96209 1.70061 1.15661 1.37527 1.32293 0.85924 0.79283 0.81340 0.77624 1.19008 1.20724 1.21940 1.20589 0.93712 0.95099 0.95341 1.21031 0.99906 1.00230 0.93346 1.21375 0.95323 0.99983 0.97591 1.21268 0.94134 1.01732 0.99357 1.21286 1.00251 0.99733 0.93333 1.21108 0.94943 1.02766 0.97566 1.21254 0.94488 0.96881 0.83211 0.90132 1.21981 1.00370 0.99154 0.96632 1.22030 0.93465 1.00596 0.99689 0.92067 0.91292 0.93724 0.93229 0.88246 0.89795 0.89408 0.89287 0.89846 0.93890 0.86706 0.84027 0.83793 0.85078 0.88998 0.94451 0.94101 0.92575 0.89615 0.93766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.19 71.98 0.66 -1.36 16 2 C -0.09 -1.49 2.68 -10.77 -0.03 -1.52 16 3 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 4 C -0.13 -2.29 5.36 30.67 0.16 -2.12 16 5 C 0.10 2.26 6.33 86.36 0.55 2.80 16 6 N -0.62 -19.52 2.97 -795.04 -2.36 -21.89 16 7 C 0.51 21.21 7.35 87.66 0.64 21.86 16 8 O -0.54 -28.11 10.38 -3.03 -0.03 -28.14 16 9 C -0.11 -4.47 3.32 29.85 0.10 -4.37 16 10 C 0.08 4.10 1.73 -12.29 -0.02 4.07 16 11 H 0.02 1.49 6.87 -2.39 -0.02 1.48 16 12 C -0.48 -26.73 6.45 25.60 0.17 -26.57 16 13 H 0.04 2.36 7.82 -2.91 -0.02 2.34 16 14 C 0.02 1.40 5.45 84.65 0.46 1.86 16 15 N -0.92 -57.27 12.81 21.45 0.27 -56.99 16 16 Si 0.93 47.37 29.54 68.60 2.03 49.39 16 17 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 18 H -0.28 -13.94 7.11 99.48 0.71 -13.24 16 19 H -0.29 -15.09 7.11 99.48 0.71 -14.38 16 20 C -0.05 -2.11 4.77 -19.86 -0.09 -2.20 16 21 C -0.13 -4.95 8.86 22.27 0.20 -4.75 16 22 C -0.12 -4.02 10.05 22.27 0.22 -3.80 16 23 C -0.15 -4.54 10.05 22.27 0.22 -4.32 16 24 C -0.13 -4.52 10.05 22.27 0.22 -4.29 16 25 C -0.15 -6.32 9.67 22.27 0.22 -6.11 16 26 C 0.14 4.11 3.49 44.97 0.16 4.27 16 27 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 28 C -0.12 -4.46 7.59 71.98 0.55 -3.91 16 29 C -0.12 -2.70 4.65 30.67 0.14 -2.56 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.09 1.91 5.96 -2.39 -0.01 1.90 16 37 H 0.09 3.24 7.00 -2.39 -0.02 3.22 16 38 H 0.08 2.93 8.10 -2.39 -0.02 2.91 16 39 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 40 H 0.11 4.31 7.70 -2.91 -0.02 4.29 16 41 H 0.14 3.53 8.06 -2.91 -0.02 3.50 16 42 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 43 H 0.13 3.86 8.06 -2.91 -0.02 3.83 16 44 H 0.09 4.28 7.95 -2.91 -0.02 4.25 16 45 H 0.04 1.61 6.77 -2.39 -0.02 1.59 16 46 H 0.04 1.71 6.72 -2.39 -0.02 1.70 16 47 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -73.39 381.02 5.33 -68.05 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.90 Total: 22.60 kcal Atomic # 6 Polarization: -37.55 SS G_CDS: 4.53 Total: -33.02 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -2.09 Total: -78.88 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.03 Total: -28.14 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.39 kcal Total: -73.39 5.33 -68.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425035463.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.829 kcal (2) G-P(sol) polarization free energy of solvation -73.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds