Wall clock time and date at job start Tue Mar 31 2020 12:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35905 * 116.99959 * 2 1 4 4 C 1.38762 * 120.20016 * 359.97438 * 3 2 1 5 5 C 1.37807 * 119.75990 * 180.25766 * 4 3 2 6 6 C 1.39088 * 120.65892 * 359.92108 * 5 4 3 7 7 C 1.37655 * 119.59524 * 359.71634 * 6 5 4 8 8 C 1.38449 * 120.19822 * 179.97438 * 3 2 1 9 9 C 1.50830 * 122.33873 * 180.61865 * 7 6 5 10 10 N 1.46679 * 109.67098 * 348.86664 * 9 7 6 11 11 C 1.36940 * 121.35150 * 224.31302 * 10 9 7 12 12 H 1.07998 * 120.00068 * 151.73570 * 11 10 9 13 13 C 1.38817 * 119.99853 * 331.73779 * 11 10 9 14 14 N 1.31611 * 120.00025 * 162.68811 * 13 11 10 15 15 Si 1.86802 * 119.99983 * 342.68860 * 13 11 10 16 16 H 1.48496 * 109.47487 * 86.91751 * 15 13 11 17 17 H 1.48501 * 109.47019 * 206.92145 * 15 13 11 18 18 H 1.48501 * 109.47109 * 326.91373 * 15 13 11 19 19 C 1.47234 * 117.29827 * 44.34094 * 10 9 7 20 20 H 1.09003 * 109.77773 * 55.23717 * 19 10 9 21 21 C 1.53008 * 109.82194 * 176.01534 * 19 10 9 22 22 C 1.53006 * 109.46627 * 292.56036 * 21 19 10 23 23 C 1.53008 * 109.46627 * 180.02562 * 22 21 19 24 24 C 1.52999 * 109.47179 * 59.99905 * 23 22 21 25 25 C 1.53002 * 109.47024 * 300.00138 * 24 23 22 26 26 C 1.52993 * 109.47590 * 60.00007 * 25 24 23 27 27 C 1.50624 * 117.51244 * 179.49598 * 6 5 4 28 28 H 1.08996 * 109.47273 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46873 * 300.00004 * 1 2 3 30 30 H 1.09000 * 109.46835 * 59.99859 * 1 2 3 31 31 H 1.07990 * 120.11560 * 0.28039 * 4 3 2 32 32 H 1.08003 * 119.66540 * 179.97438 * 5 4 3 33 33 H 1.07998 * 119.76829 * 359.96536 * 8 3 2 34 34 H 1.09001 * 109.43848 * 228.80564 * 9 7 6 35 35 H 1.08993 * 109.43588 * 108.93067 * 9 7 6 36 36 H 0.97003 * 120.00464 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.46864 * 52.55692 * 21 19 10 38 38 H 1.09001 * 109.47218 * 299.99439 * 22 21 19 39 39 H 1.08998 * 109.47544 * 60.00138 * 22 21 19 40 40 H 1.08997 * 109.47130 * 300.00065 * 23 22 21 41 41 H 1.08999 * 109.46929 * 179.97438 * 23 22 21 42 42 H 1.08999 * 109.46833 * 179.97438 * 24 23 22 43 43 H 1.09000 * 109.46911 * 59.99531 * 24 23 22 44 44 H 1.09000 * 109.46781 * 299.99473 * 25 24 23 45 45 H 1.09008 * 109.46744 * 180.02562 * 25 24 23 46 46 H 1.08991 * 109.47525 * 180.02562 * 26 25 24 47 47 H 1.08997 * 109.47044 * 59.99684 * 26 25 24 48 48 H 1.09001 * 109.20068 * 40.10980 * 27 6 5 49 49 H 1.09002 * 109.20059 * 280.77569 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2943 2.3773 -0.0005 5 6 1.9293 3.6003 -0.0059 6 6 3.3180 3.6784 -0.0092 7 6 4.0640 2.5216 -0.0011 8 6 3.4283 1.2882 0.0005 9 6 5.5722 2.5342 0.0098 10 7 6.0566 3.8928 -0.2567 11 6 7.0887 4.1234 -1.1266 12 1 7.1467 5.0611 -1.6592 13 6 8.0605 3.1519 -1.3237 14 7 8.8450 3.2104 -2.3789 15 14 8.2547 1.7616 -0.0914 16 1 7.3340 0.6522 -0.4474 17 1 9.6557 1.2696 -0.1169 18 1 7.9292 2.2576 1.2699 19 6 5.3884 4.9985 0.4496 20 1 5.4174 4.8205 1.5246 21 6 6.0882 6.3198 0.1247 22 6 7.4921 6.3164 0.7332 23 6 8.1916 7.6379 0.4088 24 6 7.3850 8.7990 0.9938 25 6 5.9812 8.8022 0.3853 26 6 5.2816 7.4808 0.7096 27 6 3.9377 5.0512 -0.0267 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2156 2.3267 0.0036 32 1 1.3428 4.5072 -0.0067 33 1 4.0160 0.3821 0.0015 34 1 5.9462 1.8584 -0.7594 35 1 5.9307 2.2060 0.9854 36 1 9.5238 2.5314 -2.5169 37 1 6.1612 6.4359 -0.9567 38 1 7.4191 6.2002 1.8145 39 1 8.0666 5.4890 0.3168 40 1 8.2646 7.7546 -0.6724 41 1 9.1916 7.6357 0.8427 42 1 7.8836 9.7404 0.7631 43 1 7.3120 8.6822 2.0750 44 1 6.0542 8.9190 -0.6960 45 1 5.4066 9.6297 0.8018 46 1 4.2817 7.4830 0.2758 47 1 5.2086 7.3642 1.7909 48 1 3.3687 5.7098 0.6295 49 1 3.9081 5.4449 -1.0428 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444753362.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:12 Heat of formation + Delta-G solvation = -8.372786 kcal Electronic energy + Delta-G solvation = -27626.145305 eV Core-core repulsion = 24132.007087 eV Total energy + Delta-G solvation = -3494.138218 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = -0.11 seconds Orbital eigenvalues (eV) -40.13282 -38.94412 -37.58968 -35.47280 -32.97194 -31.88529 -30.78897 -30.37775 -29.78240 -28.14930 -26.57401 -25.52137 -23.71077 -22.40264 -21.96814 -21.63800 -20.61805 -19.28146 -19.04754 -17.70533 -16.53158 -15.89207 -15.65526 -15.29304 -15.08326 -14.76838 -14.39100 -14.09886 -13.72334 -13.67028 -13.53280 -13.42384 -13.02893 -12.77994 -12.48717 -12.28576 -12.21760 -11.95609 -11.81641 -11.74069 -11.52922 -11.25341 -10.94200 -10.74501 -10.70914 -10.62719 -10.51721 -10.35866 -10.20606 -10.01456 -9.74064 -9.51316 -9.46783 -9.20674 -8.54874 -8.39280 -7.68468 -6.93614 -5.93165 -3.30990 1.65871 1.77234 3.32505 3.39070 3.49196 3.49971 4.05761 4.52787 4.80760 4.92867 5.06529 5.09655 5.10970 5.17477 5.19773 5.25383 5.36414 5.38085 5.40483 5.62095 5.64023 5.74726 5.75679 5.86655 5.94072 5.97798 5.99930 6.03428 6.07912 6.11851 6.20403 6.26091 6.31764 6.36494 6.41414 6.43652 6.49247 6.56672 6.60301 6.62600 6.67910 6.75209 6.86928 6.89448 7.09232 7.19729 7.24326 7.43033 7.62036 7.94361 8.35462 8.92298 9.71443 10.11149 11.22188 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012393 B = 0.005122 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.861988 B = 5465.069729 C = 7336.094320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.321 6.321 3 C 0.114 3.886 4 C -0.215 4.215 5 C -0.089 4.089 6 C -0.092 4.092 7 C -0.036 4.036 8 C -0.155 4.155 9 C 0.157 3.843 10 N -0.599 5.599 11 C -0.246 4.246 12 H 0.095 0.905 13 C 0.025 3.975 14 N -0.908 5.908 15 Si 0.875 3.125 16 H -0.287 1.287 17 H -0.303 1.303 18 H -0.270 1.270 19 C 0.180 3.820 20 H 0.036 0.964 21 C -0.070 4.070 22 C -0.116 4.116 23 C -0.116 4.116 24 C -0.118 4.118 25 C -0.116 4.116 26 C -0.116 4.116 27 C -0.089 4.089 28 H 0.095 0.905 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.087 0.913 35 H 0.041 0.959 36 H 0.262 0.738 37 H 0.079 0.921 38 H 0.042 0.958 39 H 0.102 0.898 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.051 0.949 46 H 0.058 0.942 47 H 0.055 0.945 48 H 0.063 0.937 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.019 3.778 6.781 15.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.235 6.235 3 C 0.070 3.930 4 C -0.234 4.234 5 C -0.107 4.107 6 C -0.093 4.093 7 C -0.038 4.038 8 C -0.174 4.174 9 C 0.031 3.969 10 N -0.322 5.322 11 C -0.374 4.374 12 H 0.112 0.888 13 C -0.174 4.174 14 N -0.551 5.551 15 Si 0.705 3.295 16 H -0.214 1.214 17 H -0.231 1.231 18 H -0.196 1.196 19 C 0.073 3.927 20 H 0.054 0.946 21 C -0.089 4.089 22 C -0.154 4.154 23 C -0.154 4.154 24 C -0.155 4.155 25 C -0.153 4.153 26 C -0.154 4.154 27 C -0.128 4.128 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.143 0.857 34 H 0.105 0.895 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.061 0.939 39 H 0.121 0.879 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.082 0.918 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.751 3.538 6.672 14.820 hybrid contribution -0.254 -0.892 0.605 1.107 sum -13.005 2.646 7.277 15.136 Atomic orbital electron populations 1.22959 0.79107 1.03346 1.01068 1.86049 1.20796 1.27394 1.89301 1.18832 0.92202 0.83814 0.98197 1.20980 0.99250 0.92486 1.10681 1.20966 0.94103 0.96659 0.98944 1.19524 0.92439 0.95438 1.01854 1.20275 0.97675 0.91225 0.94639 1.20362 0.91165 0.98365 1.07501 1.20386 0.87339 0.89465 0.99693 1.44338 1.38005 0.99717 1.50152 1.18791 0.98895 1.04311 1.15380 0.88783 1.25263 0.96623 0.98068 0.97413 1.69779 1.23050 1.35831 1.26462 0.87141 0.75891 0.82931 0.83526 1.21396 1.23146 1.19557 1.20494 0.89538 0.88441 0.94184 0.94619 1.21095 0.94672 0.91998 1.01096 1.21708 0.96329 0.98217 0.99113 1.21509 0.98003 0.95057 1.00823 1.21545 0.95870 0.98254 0.99844 1.21491 0.95976 0.97116 1.00732 1.21659 0.98595 0.94680 1.00434 1.20990 0.97905 0.92177 1.01737 0.88706 0.93004 0.92942 0.86193 0.86411 0.85716 0.89494 0.94212 0.92760 0.90241 0.93948 0.87944 0.92087 0.92933 0.93086 0.92676 0.92193 0.93009 0.92329 0.92641 0.91825 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.82 101.05 0.99 1.29 16 2 O -0.32 -4.75 10.50 -19.44 -0.20 -4.96 16 3 C 0.11 1.86 6.68 -39.31 -0.26 1.60 16 4 C -0.22 -3.13 9.04 -39.55 -0.36 -3.49 16 5 C -0.09 -1.34 9.58 -39.42 -0.38 -1.72 16 6 C -0.09 -1.64 5.77 -104.56 -0.60 -2.24 16 7 C -0.04 -0.71 5.82 -104.58 -0.61 -1.32 16 8 C -0.15 -2.83 9.56 -39.31 -0.38 -3.20 16 9 C 0.16 3.46 3.98 -5.03 -0.02 3.44 16 10 N -0.60 -13.57 2.71 -166.37 -0.45 -14.02 16 11 C -0.25 -6.36 6.99 -15.06 -0.11 -6.46 16 12 H 0.09 2.58 6.23 -52.49 -0.33 2.26 16 13 C 0.03 0.70 5.29 -17.43 -0.09 0.60 16 14 N -0.91 -26.88 13.97 55.49 0.78 -26.11 16 15 Si 0.87 21.80 24.18 -169.99 -4.11 17.69 16 16 H -0.29 -6.96 6.48 56.52 0.37 -6.59 16 17 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 18 H -0.27 -6.61 6.62 56.52 0.37 -6.24 16 19 C 0.18 3.40 2.43 -67.64 -0.16 3.23 16 20 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 21 C -0.07 -1.22 1.27 -90.61 -0.12 -1.33 16 22 C -0.12 -2.12 4.90 -26.72 -0.13 -2.25 16 23 C -0.12 -1.84 5.92 -26.73 -0.16 -2.00 16 24 C -0.12 -1.56 5.92 -26.73 -0.16 -1.72 16 25 C -0.12 -1.49 5.92 -26.73 -0.16 -1.65 16 26 C -0.12 -1.62 4.72 -26.74 -0.13 -1.74 16 27 C -0.09 -1.50 4.25 -28.03 -0.12 -1.62 16 28 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.45 7.67 -51.93 -0.40 0.05 16 30 H 0.05 0.47 7.67 -51.93 -0.40 0.07 16 31 H 0.12 1.39 6.33 -52.49 -0.33 1.05 16 32 H 0.12 1.47 8.05 -52.48 -0.42 1.05 16 33 H 0.12 2.21 8.05 -52.49 -0.42 1.79 16 34 H 0.09 2.09 5.15 -51.93 -0.27 1.82 16 35 H 0.04 0.89 6.38 -51.93 -0.33 0.56 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.08 1.56 6.61 -51.93 -0.34 1.21 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.10 2.27 5.71 -51.93 -0.30 1.97 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 46 H 0.06 0.76 6.65 -51.93 -0.35 0.42 16 47 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.06 0.90 7.10 -51.93 -0.37 0.53 16 49 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 LS Contribution 358.81 15.07 5.41 5.41 Total: -1.00 -29.17 358.81 -9.62 -38.79 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -8.10 Total: 3.77 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -2.94 Total: -20.57 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.32 Total: -40.13 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.20 Total: -4.96 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.11 Total: 17.69 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.17 -9.62 -38.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444753362.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.419 kcal (2) G-P(sol) polarization free energy of solvation -29.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.11 seconds