Wall clock time and date at job start Tue Mar 31 2020 12:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35905 * 116.99959 * 2 1 4 4 C 1.38762 * 120.20016 * 359.97438 * 3 2 1 5 5 C 1.37807 * 119.75990 * 180.25766 * 4 3 2 6 6 C 1.39088 * 120.65892 * 359.92108 * 5 4 3 7 7 C 1.37655 * 119.59524 * 359.71634 * 6 5 4 8 8 C 1.38449 * 120.19822 * 179.97438 * 3 2 1 9 9 C 1.50830 * 122.33873 * 180.61865 * 7 6 5 10 10 N 1.46679 * 109.67098 * 348.86664 * 9 7 6 11 11 C 1.36940 * 121.35150 * 224.31302 * 10 9 7 12 12 H 1.07998 * 120.00068 * 151.73570 * 11 10 9 13 13 C 1.38817 * 119.99853 * 331.73779 * 11 10 9 14 14 N 1.31611 * 120.00025 * 162.68811 * 13 11 10 15 15 Si 1.86802 * 119.99983 * 342.68860 * 13 11 10 16 16 H 1.48496 * 109.47487 * 86.91751 * 15 13 11 17 17 H 1.48501 * 109.47019 * 206.92145 * 15 13 11 18 18 H 1.48501 * 109.47109 * 326.91373 * 15 13 11 19 19 C 1.47234 * 117.29827 * 44.34094 * 10 9 7 20 20 H 1.09003 * 109.77773 * 55.23717 * 19 10 9 21 21 C 1.53008 * 109.82194 * 176.01534 * 19 10 9 22 22 C 1.53006 * 109.46627 * 292.56036 * 21 19 10 23 23 C 1.53008 * 109.46627 * 180.02562 * 22 21 19 24 24 C 1.52999 * 109.47179 * 59.99905 * 23 22 21 25 25 C 1.53002 * 109.47024 * 300.00138 * 24 23 22 26 26 C 1.52993 * 109.47590 * 60.00007 * 25 24 23 27 27 C 1.50624 * 117.51244 * 179.49598 * 6 5 4 28 28 H 1.08996 * 109.47273 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46873 * 300.00004 * 1 2 3 30 30 H 1.09000 * 109.46835 * 59.99859 * 1 2 3 31 31 H 1.07990 * 120.11560 * 0.28039 * 4 3 2 32 32 H 1.08003 * 119.66540 * 179.97438 * 5 4 3 33 33 H 1.07998 * 119.76829 * 359.96536 * 8 3 2 34 34 H 1.09001 * 109.43848 * 228.80564 * 9 7 6 35 35 H 1.08993 * 109.43588 * 108.93067 * 9 7 6 36 36 H 0.97003 * 120.00464 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.46864 * 52.55692 * 21 19 10 38 38 H 1.09001 * 109.47218 * 299.99439 * 22 21 19 39 39 H 1.08998 * 109.47544 * 60.00138 * 22 21 19 40 40 H 1.08997 * 109.47130 * 300.00065 * 23 22 21 41 41 H 1.08999 * 109.46929 * 179.97438 * 23 22 21 42 42 H 1.08999 * 109.46833 * 179.97438 * 24 23 22 43 43 H 1.09000 * 109.46911 * 59.99531 * 24 23 22 44 44 H 1.09000 * 109.46781 * 299.99473 * 25 24 23 45 45 H 1.09008 * 109.46744 * 180.02562 * 25 24 23 46 46 H 1.08991 * 109.47525 * 180.02562 * 26 25 24 47 47 H 1.08997 * 109.47044 * 59.99684 * 26 25 24 48 48 H 1.09001 * 109.20068 * 40.10980 * 27 6 5 49 49 H 1.09002 * 109.20059 * 280.77569 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2943 2.3773 -0.0005 5 6 1.9293 3.6003 -0.0059 6 6 3.3180 3.6784 -0.0092 7 6 4.0640 2.5216 -0.0011 8 6 3.4283 1.2882 0.0005 9 6 5.5722 2.5342 0.0098 10 7 6.0566 3.8928 -0.2567 11 6 7.0887 4.1234 -1.1266 12 1 7.1467 5.0611 -1.6592 13 6 8.0605 3.1519 -1.3237 14 7 8.8450 3.2104 -2.3789 15 14 8.2547 1.7616 -0.0914 16 1 7.3340 0.6522 -0.4474 17 1 9.6557 1.2696 -0.1169 18 1 7.9292 2.2576 1.2699 19 6 5.3884 4.9985 0.4496 20 1 5.4174 4.8205 1.5246 21 6 6.0882 6.3198 0.1247 22 6 7.4921 6.3164 0.7332 23 6 8.1916 7.6379 0.4088 24 6 7.3850 8.7990 0.9938 25 6 5.9812 8.8022 0.3853 26 6 5.2816 7.4808 0.7096 27 6 3.9377 5.0512 -0.0267 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2156 2.3267 0.0036 32 1 1.3428 4.5072 -0.0067 33 1 4.0160 0.3821 0.0015 34 1 5.9462 1.8584 -0.7594 35 1 5.9307 2.2060 0.9854 36 1 9.5238 2.5314 -2.5169 37 1 6.1612 6.4359 -0.9567 38 1 7.4191 6.2002 1.8145 39 1 8.0666 5.4890 0.3168 40 1 8.2646 7.7546 -0.6724 41 1 9.1916 7.6357 0.8427 42 1 7.8836 9.7404 0.7631 43 1 7.3120 8.6822 2.0750 44 1 6.0542 8.9190 -0.6960 45 1 5.4066 9.6297 0.8018 46 1 4.2817 7.4830 0.2758 47 1 5.2086 7.3642 1.7909 48 1 3.3687 5.7098 0.6295 49 1 3.9081 5.4449 -1.0428 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444753362.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:09 Heat of formation + Delta-G solvation = -24.131713 kcal Electronic energy + Delta-G solvation = -27626.828663 eV Core-core repulsion = 24132.007087 eV Total energy + Delta-G solvation = -3494.821577 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -41.42522 -40.25832 -38.81367 -36.97106 -34.58271 -33.60215 -32.13669 -31.75716 -31.17817 -29.27276 -27.74777 -27.18716 -25.23230 -23.85290 -23.33206 -22.94020 -21.88010 -20.82808 -20.41766 -18.97395 -18.18660 -17.27359 -16.94457 -16.65383 -16.51315 -16.32346 -15.73962 -15.61139 -15.11451 -14.98493 -14.71686 -14.66907 -14.40963 -14.29956 -14.11581 -13.97108 -13.49518 -13.20183 -13.10384 -12.99738 -12.82152 -12.55840 -12.52857 -12.31132 -12.22158 -11.92374 -11.84851 -11.80974 -11.55834 -11.53961 -11.46538 -11.08646 -10.91169 -10.60351 -10.46619 -9.75036 -8.93929 -8.85377 -8.10302 -5.42193 0.36928 0.49136 1.26989 1.37104 1.43593 2.36801 2.42925 2.76363 3.07852 3.28800 3.78029 3.83317 3.93314 4.00465 4.09093 4.14949 4.24178 4.32774 4.35819 4.41967 4.43226 4.46743 4.51318 4.57379 4.65630 4.70306 4.71470 4.75056 4.78996 4.81777 4.83667 4.91554 4.96382 5.00741 5.07738 5.18840 5.28083 5.31333 5.35737 5.39700 5.42977 5.47540 5.50193 5.59077 5.75482 5.81943 5.84992 5.89869 5.95236 6.23017 6.49994 6.93022 7.65306 8.09263 9.09228 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012393 B = 0.005122 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.861988 B = 5465.069729 C = 7336.094320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.115 3.885 4 C -0.203 4.203 5 C -0.078 4.078 6 C -0.110 4.110 7 C -0.062 4.062 8 C -0.178 4.178 9 C 0.159 3.841 10 N -0.611 5.611 11 C -0.207 4.207 12 H 0.071 0.929 13 C -0.031 4.031 14 N -0.957 5.957 15 Si 0.924 3.076 16 H -0.282 1.282 17 H -0.313 1.313 18 H -0.266 1.266 19 C 0.172 3.828 20 H 0.037 0.963 21 C -0.064 4.064 22 C -0.114 4.114 23 C -0.115 4.115 24 C -0.112 4.112 25 C -0.114 4.114 26 C -0.108 4.108 27 C -0.080 4.080 28 H 0.117 0.883 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.159 0.841 32 H 0.156 0.844 33 H 0.113 0.887 34 H 0.057 0.943 35 H 0.033 0.967 36 H 0.257 0.743 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.042 0.958 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.051 0.949 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.068 0.932 48 H 0.102 0.898 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.378 5.528 8.720 20.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.070 3.930 4 C -0.221 4.221 5 C -0.096 4.096 6 C -0.111 4.111 7 C -0.064 4.064 8 C -0.197 4.197 9 C 0.034 3.966 10 N -0.335 5.335 11 C -0.337 4.337 12 H 0.089 0.911 13 C -0.225 4.225 14 N -0.605 5.605 15 Si 0.755 3.245 16 H -0.209 1.209 17 H -0.242 1.242 18 H -0.191 1.191 19 C 0.068 3.932 20 H 0.055 0.945 21 C -0.083 4.083 22 C -0.152 4.152 23 C -0.152 4.152 24 C -0.149 4.149 25 C -0.152 4.152 26 C -0.145 4.145 27 C -0.118 4.118 28 H 0.135 0.865 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.177 0.823 32 H 0.174 0.826 33 H 0.131 0.869 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.100 0.900 46 H 0.094 0.906 47 H 0.087 0.913 48 H 0.120 0.880 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.164 5.287 8.648 19.934 hybrid contribution 0.936 -1.452 0.019 1.728 sum -16.228 3.835 8.668 18.793 Atomic orbital electron populations 1.23349 0.76272 1.05498 1.02417 1.86035 1.23700 1.26811 1.88962 1.18884 0.91594 0.85249 0.97309 1.21406 1.01099 0.91350 1.08242 1.21317 0.92890 0.98462 0.96891 1.19716 0.93927 0.94844 1.02585 1.19992 0.95755 0.92885 0.97766 1.20337 0.92702 0.97566 1.09117 1.20167 0.89934 0.88372 0.98143 1.44504 1.37505 1.01292 1.50189 1.18663 0.98711 1.02493 1.13794 0.91138 1.25719 0.97356 1.00568 0.98886 1.69890 1.24767 1.37273 1.28543 0.86309 0.74999 0.81138 0.82045 1.20931 1.24222 1.19087 1.20777 0.91041 0.87623 0.93806 0.94475 1.21021 0.94730 0.93135 0.99389 1.21585 0.96650 0.97808 0.99133 1.21471 0.98594 0.95247 0.99917 1.21509 0.95816 0.97335 1.00237 1.21504 0.95837 0.97382 1.00442 1.21611 0.98712 0.93256 1.00963 1.20900 0.96245 0.92682 1.01970 0.86468 0.91326 0.91684 0.82316 0.82605 0.86863 0.92451 0.95003 0.93338 0.93226 0.93192 0.92935 0.93941 0.92811 0.91355 0.91547 0.93030 0.90036 0.90569 0.91326 0.87985 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.82 113.37 1.11 1.41 16 2 O -0.34 -9.29 10.50 -92.48 -0.97 -10.26 16 3 C 0.11 3.50 6.68 22.45 0.15 3.65 16 4 C -0.20 -5.00 9.04 22.29 0.20 -4.80 16 5 C -0.08 -2.01 9.58 22.37 0.21 -1.80 16 6 C -0.11 -3.68 5.77 -19.82 -0.11 -3.80 16 7 C -0.06 -2.45 5.82 -19.84 -0.12 -2.57 16 8 C -0.18 -6.53 9.56 22.44 0.21 -6.31 16 9 C 0.16 7.31 3.98 85.64 0.34 7.65 16 10 N -0.61 -28.71 2.71 -680.29 -1.84 -30.56 16 11 C -0.21 -11.36 6.99 84.03 0.59 -10.77 16 12 H 0.07 4.17 6.23 -2.91 -0.02 4.15 16 13 C -0.03 -1.83 5.29 84.86 0.45 -1.39 16 14 N -0.96 -60.43 13.97 21.65 0.30 -60.13 16 15 Si 0.92 47.98 24.18 68.60 1.66 49.64 16 16 H -0.28 -14.23 6.48 99.48 0.64 -13.59 16 17 H -0.31 -16.58 7.11 99.48 0.71 -15.87 16 18 H -0.27 -13.34 6.62 99.48 0.66 -12.68 16 19 C 0.17 6.45 2.43 44.78 0.11 6.56 16 20 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 21 C -0.06 -2.22 1.27 -10.79 -0.01 -2.23 16 22 C -0.11 -4.26 4.90 30.60 0.15 -4.11 16 23 C -0.11 -3.66 5.92 30.60 0.18 -3.48 16 24 C -0.11 -2.68 5.92 30.59 0.18 -2.50 16 25 C -0.11 -2.58 5.92 30.59 0.18 -2.40 16 26 C -0.11 -2.67 4.72 30.59 0.14 -2.53 16 27 C -0.08 -2.49 4.25 29.75 0.13 -2.36 16 28 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.07 0.86 7.67 -2.39 -0.02 0.84 16 30 H 0.06 0.87 7.67 -2.39 -0.02 0.85 16 31 H 0.16 2.68 6.33 -2.92 -0.02 2.66 16 32 H 0.16 2.86 8.05 -2.91 -0.02 2.84 16 33 H 0.11 4.23 8.05 -2.91 -0.02 4.20 16 34 H 0.06 2.92 5.15 -2.39 -0.01 2.91 16 35 H 0.03 1.50 6.38 -2.39 -0.02 1.48 16 36 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 37 H 0.05 2.01 6.61 -2.39 -0.02 2.00 16 38 H 0.05 1.74 8.14 -2.39 -0.02 1.73 16 39 H 0.05 2.48 5.71 -2.39 -0.01 2.46 16 40 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 46 H 0.08 1.65 6.65 -2.39 -0.02 1.64 16 47 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.10 2.40 7.10 -2.39 -0.02 2.38 16 49 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 Total: -1.00 -69.21 358.81 4.06 -65.15 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.82 Total: 17.92 kcal Atomic # 6 Polarization: -35.87 SS G_CDS: 4.10 Total: -31.77 kcal Atomic # 7 Polarization: -89.14 SS G_CDS: -1.54 Total: -90.68 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.97 Total: -10.26 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 1.66 Total: 49.64 kcal Total: -69.21 4.06 -65.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444753362.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.020 kcal (2) G-P(sol) polarization free energy of solvation -69.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds