Wall clock time and date at job start Tue Mar 31 2020 12:00:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42894 * 1
3 3 C 1.35903 * 117.00585 * 2 1
4 4 C 1.38765 * 120.19833 * 0.02562 * 3 2 1
5 5 C 1.37804 * 119.76909 * 179.78278 * 4 3 2
6 6 C 1.39026 * 120.66229 * 0.16109 * 5 4 3
7 7 C 1.37721 * 119.60552 * 0.17863 * 6 5 4
8 8 C 1.38442 * 120.20329 * 179.72183 * 3 2 1
9 9 C 1.50816 * 122.34914 * 179.21297 * 7 6 5
10 10 N 1.46673 * 109.68710 * 11.36772 * 9 7 6
11 11 C 1.36939 * 121.34365 * 135.66194 * 10 9 7
12 12 H 1.08001 * 119.99722 * 208.41237 * 11 10 9
13 13 C 1.38804 * 119.99938 * 28.40425 * 11 10 9
14 14 N 1.31627 * 119.99928 * 10.58338 * 13 11 10
15 15 Si 1.86801 * 120.00142 * 190.58541 * 13 11 10
16 16 H 1.48495 * 109.47374 * 90.00016 * 15 13 11
17 17 H 1.48502 * 109.47053 * 210.00316 * 15 13 11
18 18 H 1.48498 * 109.46814 * 329.99733 * 15 13 11
19 19 C 1.47231 * 117.31761 * 315.64069 * 10 9 7
20 20 H 1.09006 * 109.82004 * 304.64950 * 19 10 9
21 21 C 1.53005 * 109.77500 * 183.87958 * 19 10 9
22 22 C 1.53005 * 109.46925 * 187.54828 * 21 19 10
23 23 C 1.53005 * 109.46925 * 180.02562 * 22 21 19
24 24 C 1.52999 * 109.47103 * 59.99805 * 23 22 21
25 25 C 1.53005 * 109.47389 * 299.99911 * 24 23 22
26 26 C 1.52999 * 109.47103 * 67.54633 * 21 19 10
27 27 C 1.50621 * 117.55768 * 180.58902 * 6 5 4
28 28 H 1.09005 * 109.47096 * 300.00007 * 1 2 3
29 29 H 1.09007 * 109.47175 * 59.99522 * 1 2 3
30 30 H 1.08993 * 109.47346 * 179.97438 * 1 2 3
31 31 H 1.08003 * 120.11339 * 359.79899 * 4 3 2
32 32 H 1.07995 * 119.67119 * 180.18319 * 5 4 3
33 33 H 1.07995 * 119.77135 * 359.88992 * 8 3 2
34 34 H 1.09000 * 109.43116 * 251.30099 * 9 7 6
35 35 H 1.09007 * 109.40196 * 131.41443 * 9 7 6
36 36 H 0.96996 * 119.99570 * 179.97438 * 14 13 11
37 37 H 1.09000 * 109.47076 * 307.54578 * 21 19 10
38 38 H 1.09000 * 109.47039 * 299.99772 * 22 21 19
39 39 H 1.08997 * 109.47086 * 60.00316 * 22 21 19
40 40 H 1.09007 * 109.46482 * 300.00353 * 23 22 21
41 41 H 1.08990 * 109.47209 * 180.02562 * 23 22 21
42 42 H 1.08994 * 109.46917 * 180.02562 * 24 23 22
43 43 H 1.09000 * 109.47200 * 60.00020 * 24 23 22
44 44 H 1.08998 * 109.47301 * 300.00683 * 25 24 23
45 45 H 1.08994 * 109.47411 * 180.02562 * 25 24 23
46 46 H 1.08995 * 109.47083 * 299.99845 * 26 21 19
47 47 H 1.08999 * 109.46741 * 60.00288 * 26 21 19
48 48 H 1.09003 * 109.20179 * 319.97344 * 27 6 5
49 49 H 1.08996 * 109.19760 * 79.30711 * 27 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0461 1.2108 0.0000
4 6 1.2944 2.3773 0.0005
5 6 1.9294 3.6004 0.0051
6 6 3.3174 3.6786 0.0058
7 6 4.0641 2.5215 -0.0019
8 6 3.4283 1.2881 0.0058
9 6 5.5721 2.5342 -0.0191
10 7 6.0578 3.8925 0.2465
11 6 7.0934 4.1220 1.1125
12 1 7.1525 5.0583 1.6476
13 6 8.0672 3.1513 1.3028
14 7 8.1166 2.1039 0.5071
15 14 9.3073 3.3312 2.6881
16 1 8.7762 2.6850 3.9151
17 1 10.5833 2.6793 2.2979
18 1 9.5485 4.7725 2.9524
19 6 5.3874 4.9992 -0.4559
20 1 5.4133 4.8240 -1.5315
21 6 6.0883 6.3196 -0.1296
22 6 5.2792 7.4828 -0.7070
23 6 5.9804 8.8031 -0.3813
24 6 7.3815 8.8016 -0.9960
25 6 8.1906 7.6384 -0.4186
26 6 7.4896 6.3185 -0.7438
27 6 3.9380 5.0509 0.0245
28 1 -0.3633 0.5139 0.8900
29 1 -0.3634 0.5139 -0.8900
30 1 -0.3634 -1.0276 -0.0005
31 1 0.2156 2.3268 -0.0023
32 1 1.3428 4.5072 0.0085
33 1 4.0160 0.3820 0.0121
34 1 5.9264 2.2070 -0.9966
35 1 5.9488 1.8578 0.7482
36 1 8.7973 1.4258 0.6399
37 1 6.1657 6.4323 0.9518
38 1 5.2018 7.3700 -1.7884
39 1 4.2809 7.4835 -0.2694
40 1 6.0582 8.9159 0.7001
41 1 5.4039 9.6317 -0.7922
42 1 7.8812 9.7419 -0.7635
43 1 7.3037 8.6886 -2.0773
44 1 8.2683 7.7513 0.6628
45 1 9.1889 7.6376 -0.8561
46 1 8.0659 5.4898 -0.3325
47 1 7.4121 6.2058 -1.8252
48 1 3.3672 5.7114 -0.6283
49 1 3.9119 5.4422 1.0415
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000444753363.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:00:17
Heat of formation + Delta-G solvation = -14.464563 kcal
Electronic energy + Delta-G solvation = -27539.279702 eV
Core-core repulsion = 24044.877324 eV
Total energy + Delta-G solvation = -3494.402378 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 2.27 seconds
Orbital eigenvalues (eV)
-39.92476 -38.80647 -37.44843 -35.25717 -32.89283 -31.54053 -30.67541 -30.26472
-29.30889 -27.99917 -26.37456 -25.47524 -23.40251 -22.29075 -21.96391 -21.40745
-20.50213 -19.23892 -18.93967 -17.37788 -16.42529 -15.72142 -15.52311 -15.17848
-14.98326 -14.51187 -14.05019 -13.85446 -13.74548 -13.54276 -13.36704 -13.28743
-12.72914 -12.63991 -12.53779 -12.15750 -11.92847 -11.79280 -11.64966 -11.42601
-11.23593 -11.02146 -10.82760 -10.80651 -10.59838 -10.58368 -10.51830 -10.21896
-10.17497 -10.01950 -9.88681 -9.58197 -9.39346 -9.13673 -8.55435 -8.06146
-7.49397 -6.64320 -5.78972 -3.21321 1.87015 1.96253 3.37941 3.45161
3.45876 3.53838 4.26751 4.47808 5.05198 5.09773 5.16315 5.19163
5.22091 5.26307 5.31684 5.39321 5.45119 5.49162 5.53828 5.74682
5.79166 5.86283 5.90039 6.00780 6.01739 6.03405 6.08178 6.12462
6.15537 6.23084 6.31527 6.37716 6.46902 6.50539 6.56756 6.59545
6.63972 6.73525 6.77995 6.85769 6.97389 6.99516 7.16498 7.20836
7.25239 7.39771 7.49394 7.67802 7.80293 7.82062 8.41389 9.20826
9.82215 10.42339 11.31036
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.011816 B = 0.004921 C = 0.003651
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2369.086004 B = 5688.923839 C = 7666.784452
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.322 6.322
3 C 0.111 3.889
4 C -0.223 4.223
5 C -0.091 4.091
6 C -0.101 4.101
7 C -0.038 4.038
8 C -0.154 4.154
9 C 0.207 3.793
10 N -0.586 5.586
11 C -0.237 4.237
12 H 0.072 0.928
13 C 0.004 3.996
14 N -0.907 5.907
15 Si 0.898 3.102
16 H -0.289 1.289
17 H -0.291 1.291
18 H -0.278 1.278
19 C 0.177 3.823
20 H 0.032 0.968
21 C -0.070 4.070
22 C -0.116 4.116
23 C -0.116 4.116
24 C -0.117 4.117
25 C -0.118 4.118
26 C -0.115 4.115
27 C -0.088 4.088
28 H 0.050 0.950
29 H 0.050 0.950
30 H 0.093 0.907
31 H 0.117 0.883
32 H 0.113 0.887
33 H 0.126 0.874
34 H 0.044 0.956
35 H 0.097 0.903
36 H 0.254 0.746
37 H 0.073 0.927
38 H 0.055 0.945
39 H 0.057 0.943
40 H 0.058 0.942
41 H 0.051 0.949
42 H 0.049 0.951
43 H 0.056 0.944
44 H 0.057 0.943
45 H 0.052 0.948
46 H 0.103 0.897
47 H 0.043 0.957
48 H 0.058 0.942
49 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.657 5.518 -2.690 12.299
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.236 6.236
3 C 0.067 3.933
4 C -0.241 4.241
5 C -0.109 4.109
6 C -0.101 4.101
7 C -0.040 4.040
8 C -0.173 4.173
9 C 0.082 3.918
10 N -0.308 5.308
11 C -0.366 4.366
12 H 0.090 0.910
13 C -0.195 4.195
14 N -0.552 5.552
15 Si 0.728 3.272
16 H -0.216 1.216
17 H -0.218 1.218
18 H -0.203 1.203
19 C 0.070 3.930
20 H 0.049 0.951
21 C -0.088 4.088
22 C -0.154 4.154
23 C -0.153 4.153
24 C -0.155 4.155
25 C -0.155 4.155
26 C -0.152 4.152
27 C -0.127 4.127
28 H 0.069 0.931
29 H 0.069 0.931
30 H 0.111 0.889
31 H 0.135 0.865
32 H 0.131 0.869
33 H 0.144 0.856
34 H 0.061 0.939
35 H 0.115 0.885
36 H 0.064 0.936
37 H 0.091 0.909
38 H 0.074 0.926
39 H 0.076 0.924
40 H 0.076 0.924
41 H 0.070 0.930
42 H 0.068 0.932
43 H 0.074 0.926
44 H 0.075 0.925
45 H 0.070 0.930
46 H 0.121 0.879
47 H 0.062 0.938
48 H 0.076 0.924
49 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -10.408 5.202 -2.676 11.939
hybrid contribution 0.186 0.051 0.718 0.744
sum -10.222 5.254 -1.957 11.659
Atomic orbital electron populations
1.22929 0.79379 1.03151 1.00950 1.86044 1.20575 1.27593 1.89403
1.18888 0.92364 0.83624 0.98422 1.20913 0.99002 0.92576 1.11641
1.20925 0.94280 0.96438 0.99291 1.19547 0.92311 0.95596 1.02656
1.20899 0.99664 0.90729 0.92659 1.20395 0.90811 0.98656 1.07475
1.19768 0.82767 0.88416 1.00879 1.43964 1.37098 1.00147 1.49571
1.19042 0.99405 1.02514 1.15626 0.91030 1.25072 0.97401 0.98494
0.98511 1.69953 1.35723 1.12086 1.37459 0.86345 0.80947 0.77737
0.82145 1.21564 1.21770 1.20348 1.20452 0.89445 0.88668 0.94403
0.95067 1.21082 0.94743 0.92491 1.00501 1.21671 0.98581 0.94616
1.00557 1.21496 0.95997 0.97283 1.00533 1.21539 0.95871 0.98107
0.99972 1.21531 0.98106 0.95419 1.00479 1.21679 0.96362 0.97751
0.99442 1.20984 0.98300 0.92244 1.01126 0.93103 0.93116 0.88851
0.86548 0.86865 0.85637 0.93874 0.88482 0.93562 0.90853 0.92610
0.92384 0.92366 0.93031 0.93179 0.92561 0.92471 0.92955 0.87874
0.93782 0.92364 0.91461
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.33 9.82 101.05 0.99 1.33 16
2 O -0.32 -5.07 10.50 -19.44 -0.20 -5.27 16
3 C 0.11 1.93 6.68 -39.31 -0.26 1.67 16
4 C -0.22 -3.49 9.04 -39.55 -0.36 -3.85 16
5 C -0.09 -1.49 9.58 -39.45 -0.38 -1.87 16
6 C -0.10 -1.90 5.77 -104.56 -0.60 -2.50 16
7 C -0.04 -0.78 5.82 -104.56 -0.61 -1.39 16
8 C -0.15 -2.98 9.56 -39.31 -0.38 -3.36 16
9 C 0.21 4.89 4.79 -5.04 -0.02 4.86 16
10 N -0.59 -13.75 2.94 -166.39 -0.49 -14.24 16
11 C -0.24 -5.95 6.54 -15.06 -0.10 -6.05 16
12 H 0.07 1.78 6.02 -52.49 -0.32 1.47 16
13 C 0.00 0.09 5.09 -17.43 -0.09 0.00 16
14 N -0.91 -25.08 11.07 55.49 0.61 -24.47 16
15 Si 0.90 21.09 29.57 -169.99 -5.03 16.06 16
16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
17 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16
18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
19 C 0.18 3.51 2.43 -67.64 -0.16 3.35 16
20 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16
21 C -0.07 -1.23 1.27 -90.62 -0.12 -1.35 16
22 C -0.12 -1.68 4.72 -26.73 -0.13 -1.81 16
23 C -0.12 -1.51 5.92 -26.73 -0.16 -1.66 16
24 C -0.12 -1.56 5.92 -26.73 -0.16 -1.72 16
25 C -0.12 -1.84 5.92 -26.75 -0.16 -2.00 16
26 C -0.12 -2.12 4.89 -26.76 -0.13 -2.25 16
27 C -0.09 -1.56 4.24 -28.03 -0.12 -1.67 16
28 H 0.05 0.50 7.67 -51.93 -0.40 0.10 16
29 H 0.05 0.49 7.67 -51.93 -0.40 0.09 16
30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16
31 H 0.12 1.48 6.33 -52.48 -0.33 1.15 16
32 H 0.11 1.55 8.05 -52.49 -0.42 1.13 16
33 H 0.13 2.38 8.05 -52.49 -0.42 1.96 16
34 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16
35 H 0.10 2.54 6.48 -51.93 -0.34 2.20 16
36 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16
37 H 0.07 1.42 6.60 -51.93 -0.34 1.08 16
38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16
39 H 0.06 0.79 6.65 -51.93 -0.35 0.44 16
40 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16
41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16
42 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16
43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
44 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16
45 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16
46 H 0.10 2.30 5.71 -51.93 -0.30 2.00 16
47 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16
48 H 0.06 0.90 7.10 -51.93 -0.37 0.53 16
49 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16
LS Contribution 365.69 15.07 5.51 5.51
Total: -1.00 -27.61 365.69 -10.71 -38.32
By element:
Atomic # 1 Polarization: 12.54 SS G_CDS: -8.18 Total: 4.35 kcal
Atomic # 6 Polarization: -17.33 SS G_CDS: -2.94 Total: -20.27 kcal
Atomic # 7 Polarization: -38.84 SS G_CDS: 0.13 Total: -38.71 kcal
Atomic # 8 Polarization: -5.07 SS G_CDS: -0.20 Total: -5.27 kcal
Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal
Total LS contribution 5.51 Total: 5.51 kcal
Total: -27.61 -10.71 -38.32 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000444753363.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.860 kcal
(2) G-P(sol) polarization free energy of solvation -27.611 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.751 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.714 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.325 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.465 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.27 seconds