Wall clock time and date at job start Tue Mar 31 2020 12:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35903 * 117.00585 * 2 1 4 4 C 1.38765 * 120.19833 * 0.02562 * 3 2 1 5 5 C 1.37804 * 119.76909 * 179.78278 * 4 3 2 6 6 C 1.39026 * 120.66229 * 0.16109 * 5 4 3 7 7 C 1.37721 * 119.60552 * 0.17863 * 6 5 4 8 8 C 1.38442 * 120.20329 * 179.72183 * 3 2 1 9 9 C 1.50816 * 122.34914 * 179.21297 * 7 6 5 10 10 N 1.46673 * 109.68710 * 11.36772 * 9 7 6 11 11 C 1.36939 * 121.34365 * 135.66194 * 10 9 7 12 12 H 1.08001 * 119.99722 * 208.41237 * 11 10 9 13 13 C 1.38804 * 119.99938 * 28.40425 * 11 10 9 14 14 N 1.31627 * 119.99928 * 10.58338 * 13 11 10 15 15 Si 1.86801 * 120.00142 * 190.58541 * 13 11 10 16 16 H 1.48495 * 109.47374 * 90.00016 * 15 13 11 17 17 H 1.48502 * 109.47053 * 210.00316 * 15 13 11 18 18 H 1.48498 * 109.46814 * 329.99733 * 15 13 11 19 19 C 1.47231 * 117.31761 * 315.64069 * 10 9 7 20 20 H 1.09006 * 109.82004 * 304.64950 * 19 10 9 21 21 C 1.53005 * 109.77500 * 183.87958 * 19 10 9 22 22 C 1.53005 * 109.46925 * 187.54828 * 21 19 10 23 23 C 1.53005 * 109.46925 * 180.02562 * 22 21 19 24 24 C 1.52999 * 109.47103 * 59.99805 * 23 22 21 25 25 C 1.53005 * 109.47389 * 299.99911 * 24 23 22 26 26 C 1.52999 * 109.47103 * 67.54633 * 21 19 10 27 27 C 1.50621 * 117.55768 * 180.58902 * 6 5 4 28 28 H 1.09005 * 109.47096 * 300.00007 * 1 2 3 29 29 H 1.09007 * 109.47175 * 59.99522 * 1 2 3 30 30 H 1.08993 * 109.47346 * 179.97438 * 1 2 3 31 31 H 1.08003 * 120.11339 * 359.79899 * 4 3 2 32 32 H 1.07995 * 119.67119 * 180.18319 * 5 4 3 33 33 H 1.07995 * 119.77135 * 359.88992 * 8 3 2 34 34 H 1.09000 * 109.43116 * 251.30099 * 9 7 6 35 35 H 1.09007 * 109.40196 * 131.41443 * 9 7 6 36 36 H 0.96996 * 119.99570 * 179.97438 * 14 13 11 37 37 H 1.09000 * 109.47076 * 307.54578 * 21 19 10 38 38 H 1.09000 * 109.47039 * 299.99772 * 22 21 19 39 39 H 1.08997 * 109.47086 * 60.00316 * 22 21 19 40 40 H 1.09007 * 109.46482 * 300.00353 * 23 22 21 41 41 H 1.08990 * 109.47209 * 180.02562 * 23 22 21 42 42 H 1.08994 * 109.46917 * 180.02562 * 24 23 22 43 43 H 1.09000 * 109.47200 * 60.00020 * 24 23 22 44 44 H 1.08998 * 109.47301 * 300.00683 * 25 24 23 45 45 H 1.08994 * 109.47411 * 180.02562 * 25 24 23 46 46 H 1.08995 * 109.47083 * 299.99845 * 26 21 19 47 47 H 1.08999 * 109.46741 * 60.00288 * 26 21 19 48 48 H 1.09003 * 109.20179 * 319.97344 * 27 6 5 49 49 H 1.08996 * 109.19760 * 79.30711 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2944 2.3773 0.0005 5 6 1.9294 3.6004 0.0051 6 6 3.3174 3.6786 0.0058 7 6 4.0641 2.5215 -0.0019 8 6 3.4283 1.2881 0.0058 9 6 5.5721 2.5342 -0.0191 10 7 6.0578 3.8925 0.2465 11 6 7.0934 4.1220 1.1125 12 1 7.1525 5.0583 1.6476 13 6 8.0672 3.1513 1.3028 14 7 8.1166 2.1039 0.5071 15 14 9.3073 3.3312 2.6881 16 1 8.7762 2.6850 3.9151 17 1 10.5833 2.6793 2.2979 18 1 9.5485 4.7725 2.9524 19 6 5.3874 4.9992 -0.4559 20 1 5.4133 4.8240 -1.5315 21 6 6.0883 6.3196 -0.1296 22 6 5.2792 7.4828 -0.7070 23 6 5.9804 8.8031 -0.3813 24 6 7.3815 8.8016 -0.9960 25 6 8.1906 7.6384 -0.4186 26 6 7.4896 6.3185 -0.7438 27 6 3.9380 5.0509 0.0245 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2156 2.3268 -0.0023 32 1 1.3428 4.5072 0.0085 33 1 4.0160 0.3820 0.0121 34 1 5.9264 2.2070 -0.9966 35 1 5.9488 1.8578 0.7482 36 1 8.7973 1.4258 0.6399 37 1 6.1657 6.4323 0.9518 38 1 5.2018 7.3700 -1.7884 39 1 4.2809 7.4835 -0.2694 40 1 6.0582 8.9159 0.7001 41 1 5.4039 9.6317 -0.7922 42 1 7.8812 9.7419 -0.7635 43 1 7.3037 8.6886 -2.0773 44 1 8.2683 7.7513 0.6628 45 1 9.1889 7.6376 -0.8561 46 1 8.0659 5.4898 -0.3325 47 1 7.4121 6.2058 -1.8252 48 1 3.3672 5.7114 -0.6283 49 1 3.9119 5.4422 1.0415 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444753363.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:17 Heat of formation + Delta-G solvation = -14.464563 kcal Electronic energy + Delta-G solvation = -27539.279702 eV Core-core repulsion = 24044.877324 eV Total energy + Delta-G solvation = -3494.402378 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -39.92476 -38.80647 -37.44843 -35.25717 -32.89283 -31.54053 -30.67541 -30.26472 -29.30889 -27.99917 -26.37456 -25.47524 -23.40251 -22.29075 -21.96391 -21.40745 -20.50213 -19.23892 -18.93967 -17.37788 -16.42529 -15.72142 -15.52311 -15.17848 -14.98326 -14.51187 -14.05019 -13.85446 -13.74548 -13.54276 -13.36704 -13.28743 -12.72914 -12.63991 -12.53779 -12.15750 -11.92847 -11.79280 -11.64966 -11.42601 -11.23593 -11.02146 -10.82760 -10.80651 -10.59838 -10.58368 -10.51830 -10.21896 -10.17497 -10.01950 -9.88681 -9.58197 -9.39346 -9.13673 -8.55435 -8.06146 -7.49397 -6.64320 -5.78972 -3.21321 1.87015 1.96253 3.37941 3.45161 3.45876 3.53838 4.26751 4.47808 5.05198 5.09773 5.16315 5.19163 5.22091 5.26307 5.31684 5.39321 5.45119 5.49162 5.53828 5.74682 5.79166 5.86283 5.90039 6.00780 6.01739 6.03405 6.08178 6.12462 6.15537 6.23084 6.31527 6.37716 6.46902 6.50539 6.56756 6.59545 6.63972 6.73525 6.77995 6.85769 6.97389 6.99516 7.16498 7.20836 7.25239 7.39771 7.49394 7.67802 7.80293 7.82062 8.41389 9.20826 9.82215 10.42339 11.31036 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011816 B = 0.004921 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.086004 B = 5688.923839 C = 7666.784452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.322 6.322 3 C 0.111 3.889 4 C -0.223 4.223 5 C -0.091 4.091 6 C -0.101 4.101 7 C -0.038 4.038 8 C -0.154 4.154 9 C 0.207 3.793 10 N -0.586 5.586 11 C -0.237 4.237 12 H 0.072 0.928 13 C 0.004 3.996 14 N -0.907 5.907 15 Si 0.898 3.102 16 H -0.289 1.289 17 H -0.291 1.291 18 H -0.278 1.278 19 C 0.177 3.823 20 H 0.032 0.968 21 C -0.070 4.070 22 C -0.116 4.116 23 C -0.116 4.116 24 C -0.117 4.117 25 C -0.118 4.118 26 C -0.115 4.115 27 C -0.088 4.088 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.126 0.874 34 H 0.044 0.956 35 H 0.097 0.903 36 H 0.254 0.746 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.052 0.948 46 H 0.103 0.897 47 H 0.043 0.957 48 H 0.058 0.942 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.657 5.518 -2.690 12.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.236 6.236 3 C 0.067 3.933 4 C -0.241 4.241 5 C -0.109 4.109 6 C -0.101 4.101 7 C -0.040 4.040 8 C -0.173 4.173 9 C 0.082 3.918 10 N -0.308 5.308 11 C -0.366 4.366 12 H 0.090 0.910 13 C -0.195 4.195 14 N -0.552 5.552 15 Si 0.728 3.272 16 H -0.216 1.216 17 H -0.218 1.218 18 H -0.203 1.203 19 C 0.070 3.930 20 H 0.049 0.951 21 C -0.088 4.088 22 C -0.154 4.154 23 C -0.153 4.153 24 C -0.155 4.155 25 C -0.155 4.155 26 C -0.152 4.152 27 C -0.127 4.127 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.144 0.856 34 H 0.061 0.939 35 H 0.115 0.885 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.121 0.879 47 H 0.062 0.938 48 H 0.076 0.924 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.408 5.202 -2.676 11.939 hybrid contribution 0.186 0.051 0.718 0.744 sum -10.222 5.254 -1.957 11.659 Atomic orbital electron populations 1.22929 0.79379 1.03151 1.00950 1.86044 1.20575 1.27593 1.89403 1.18888 0.92364 0.83624 0.98422 1.20913 0.99002 0.92576 1.11641 1.20925 0.94280 0.96438 0.99291 1.19547 0.92311 0.95596 1.02656 1.20899 0.99664 0.90729 0.92659 1.20395 0.90811 0.98656 1.07475 1.19768 0.82767 0.88416 1.00879 1.43964 1.37098 1.00147 1.49571 1.19042 0.99405 1.02514 1.15626 0.91030 1.25072 0.97401 0.98494 0.98511 1.69953 1.35723 1.12086 1.37459 0.86345 0.80947 0.77737 0.82145 1.21564 1.21770 1.20348 1.20452 0.89445 0.88668 0.94403 0.95067 1.21082 0.94743 0.92491 1.00501 1.21671 0.98581 0.94616 1.00557 1.21496 0.95997 0.97283 1.00533 1.21539 0.95871 0.98107 0.99972 1.21531 0.98106 0.95419 1.00479 1.21679 0.96362 0.97751 0.99442 1.20984 0.98300 0.92244 1.01126 0.93103 0.93116 0.88851 0.86548 0.86865 0.85637 0.93874 0.88482 0.93562 0.90853 0.92610 0.92384 0.92366 0.93031 0.93179 0.92561 0.92471 0.92955 0.87874 0.93782 0.92364 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.82 101.05 0.99 1.33 16 2 O -0.32 -5.07 10.50 -19.44 -0.20 -5.27 16 3 C 0.11 1.93 6.68 -39.31 -0.26 1.67 16 4 C -0.22 -3.49 9.04 -39.55 -0.36 -3.85 16 5 C -0.09 -1.49 9.58 -39.45 -0.38 -1.87 16 6 C -0.10 -1.90 5.77 -104.56 -0.60 -2.50 16 7 C -0.04 -0.78 5.82 -104.56 -0.61 -1.39 16 8 C -0.15 -2.98 9.56 -39.31 -0.38 -3.36 16 9 C 0.21 4.89 4.79 -5.04 -0.02 4.86 16 10 N -0.59 -13.75 2.94 -166.39 -0.49 -14.24 16 11 C -0.24 -5.95 6.54 -15.06 -0.10 -6.05 16 12 H 0.07 1.78 6.02 -52.49 -0.32 1.47 16 13 C 0.00 0.09 5.09 -17.43 -0.09 0.00 16 14 N -0.91 -25.08 11.07 55.49 0.61 -24.47 16 15 Si 0.90 21.09 29.57 -169.99 -5.03 16.06 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 C 0.18 3.51 2.43 -67.64 -0.16 3.35 16 20 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 21 C -0.07 -1.23 1.27 -90.62 -0.12 -1.35 16 22 C -0.12 -1.68 4.72 -26.73 -0.13 -1.81 16 23 C -0.12 -1.51 5.92 -26.73 -0.16 -1.66 16 24 C -0.12 -1.56 5.92 -26.73 -0.16 -1.72 16 25 C -0.12 -1.84 5.92 -26.75 -0.16 -2.00 16 26 C -0.12 -2.12 4.89 -26.76 -0.13 -2.25 16 27 C -0.09 -1.56 4.24 -28.03 -0.12 -1.67 16 28 H 0.05 0.50 7.67 -51.93 -0.40 0.10 16 29 H 0.05 0.49 7.67 -51.93 -0.40 0.09 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.12 1.48 6.33 -52.48 -0.33 1.15 16 32 H 0.11 1.55 8.05 -52.49 -0.42 1.13 16 33 H 0.13 2.38 8.05 -52.49 -0.42 1.96 16 34 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.10 2.54 6.48 -51.93 -0.34 2.20 16 36 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.07 1.42 6.60 -51.93 -0.34 1.08 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.79 6.65 -51.93 -0.35 0.44 16 40 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.10 2.30 5.71 -51.93 -0.30 2.00 16 47 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.06 0.90 7.10 -51.93 -0.37 0.53 16 49 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 LS Contribution 365.69 15.07 5.51 5.51 Total: -1.00 -27.61 365.69 -10.71 -38.32 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -8.18 Total: 4.35 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -2.94 Total: -20.27 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.13 Total: -38.71 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.20 Total: -5.27 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -27.61 -10.71 -38.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444753363.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.860 kcal (2) G-P(sol) polarization free energy of solvation -27.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds