Wall clock time and date at job start Tue Mar 31 2020 12:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35903 * 117.00585 * 2 1 4 4 C 1.38765 * 120.19833 * 0.02562 * 3 2 1 5 5 C 1.37804 * 119.76909 * 179.78278 * 4 3 2 6 6 C 1.39026 * 120.66229 * 0.16109 * 5 4 3 7 7 C 1.37721 * 119.60552 * 0.17863 * 6 5 4 8 8 C 1.38442 * 120.20329 * 179.72183 * 3 2 1 9 9 C 1.50816 * 122.34914 * 179.21297 * 7 6 5 10 10 N 1.46673 * 109.68710 * 11.36772 * 9 7 6 11 11 C 1.36939 * 121.34365 * 135.66194 * 10 9 7 12 12 H 1.08001 * 119.99722 * 208.41237 * 11 10 9 13 13 C 1.38804 * 119.99938 * 28.40425 * 11 10 9 14 14 N 1.31627 * 119.99928 * 10.58338 * 13 11 10 15 15 Si 1.86801 * 120.00142 * 190.58541 * 13 11 10 16 16 H 1.48495 * 109.47374 * 90.00016 * 15 13 11 17 17 H 1.48502 * 109.47053 * 210.00316 * 15 13 11 18 18 H 1.48498 * 109.46814 * 329.99733 * 15 13 11 19 19 C 1.47231 * 117.31761 * 315.64069 * 10 9 7 20 20 H 1.09006 * 109.82004 * 304.64950 * 19 10 9 21 21 C 1.53005 * 109.77500 * 183.87958 * 19 10 9 22 22 C 1.53005 * 109.46925 * 187.54828 * 21 19 10 23 23 C 1.53005 * 109.46925 * 180.02562 * 22 21 19 24 24 C 1.52999 * 109.47103 * 59.99805 * 23 22 21 25 25 C 1.53005 * 109.47389 * 299.99911 * 24 23 22 26 26 C 1.52999 * 109.47103 * 67.54633 * 21 19 10 27 27 C 1.50621 * 117.55768 * 180.58902 * 6 5 4 28 28 H 1.09005 * 109.47096 * 300.00007 * 1 2 3 29 29 H 1.09007 * 109.47175 * 59.99522 * 1 2 3 30 30 H 1.08993 * 109.47346 * 179.97438 * 1 2 3 31 31 H 1.08003 * 120.11339 * 359.79899 * 4 3 2 32 32 H 1.07995 * 119.67119 * 180.18319 * 5 4 3 33 33 H 1.07995 * 119.77135 * 359.88992 * 8 3 2 34 34 H 1.09000 * 109.43116 * 251.30099 * 9 7 6 35 35 H 1.09007 * 109.40196 * 131.41443 * 9 7 6 36 36 H 0.96996 * 119.99570 * 179.97438 * 14 13 11 37 37 H 1.09000 * 109.47076 * 307.54578 * 21 19 10 38 38 H 1.09000 * 109.47039 * 299.99772 * 22 21 19 39 39 H 1.08997 * 109.47086 * 60.00316 * 22 21 19 40 40 H 1.09007 * 109.46482 * 300.00353 * 23 22 21 41 41 H 1.08990 * 109.47209 * 180.02562 * 23 22 21 42 42 H 1.08994 * 109.46917 * 180.02562 * 24 23 22 43 43 H 1.09000 * 109.47200 * 60.00020 * 24 23 22 44 44 H 1.08998 * 109.47301 * 300.00683 * 25 24 23 45 45 H 1.08994 * 109.47411 * 180.02562 * 25 24 23 46 46 H 1.08995 * 109.47083 * 299.99845 * 26 21 19 47 47 H 1.08999 * 109.46741 * 60.00288 * 26 21 19 48 48 H 1.09003 * 109.20179 * 319.97344 * 27 6 5 49 49 H 1.08996 * 109.19760 * 79.30711 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2944 2.3773 0.0005 5 6 1.9294 3.6004 0.0051 6 6 3.3174 3.6786 0.0058 7 6 4.0641 2.5215 -0.0019 8 6 3.4283 1.2881 0.0058 9 6 5.5721 2.5342 -0.0191 10 7 6.0578 3.8925 0.2465 11 6 7.0934 4.1220 1.1125 12 1 7.1525 5.0583 1.6476 13 6 8.0672 3.1513 1.3028 14 7 8.1166 2.1039 0.5071 15 14 9.3073 3.3312 2.6881 16 1 8.7762 2.6850 3.9151 17 1 10.5833 2.6793 2.2979 18 1 9.5485 4.7725 2.9524 19 6 5.3874 4.9992 -0.4559 20 1 5.4133 4.8240 -1.5315 21 6 6.0883 6.3196 -0.1296 22 6 5.2792 7.4828 -0.7070 23 6 5.9804 8.8031 -0.3813 24 6 7.3815 8.8016 -0.9960 25 6 8.1906 7.6384 -0.4186 26 6 7.4896 6.3185 -0.7438 27 6 3.9380 5.0509 0.0245 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2156 2.3268 -0.0023 32 1 1.3428 4.5072 0.0085 33 1 4.0160 0.3820 0.0121 34 1 5.9264 2.2070 -0.9966 35 1 5.9488 1.8578 0.7482 36 1 8.7973 1.4258 0.6399 37 1 6.1657 6.4323 0.9518 38 1 5.2018 7.3700 -1.7884 39 1 4.2809 7.4835 -0.2694 40 1 6.0582 8.9159 0.7001 41 1 5.4039 9.6317 -0.7922 42 1 7.8812 9.7419 -0.7635 43 1 7.3037 8.6886 -2.0773 44 1 8.2683 7.7513 0.6628 45 1 9.1889 7.6376 -0.8561 46 1 8.0659 5.4898 -0.3325 47 1 7.4121 6.2058 -1.8252 48 1 3.3672 5.7114 -0.6283 49 1 3.9119 5.4422 1.0415 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444753363.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:14 Heat of formation + Delta-G solvation = -27.364711 kcal Electronic energy + Delta-G solvation = -27539.839094 eV Core-core repulsion = 24044.877324 eV Total energy + Delta-G solvation = -3494.961770 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -41.29840 -40.17086 -38.73854 -36.80787 -34.55074 -33.17083 -32.04900 -31.59129 -30.88437 -29.17871 -27.66723 -27.18720 -24.93096 -23.82250 -23.31929 -22.80121 -21.82419 -20.73555 -20.36064 -18.72775 -18.10273 -17.05383 -16.91894 -16.60818 -16.46126 -15.85046 -15.67871 -15.33175 -15.18174 -14.84131 -14.65306 -14.56020 -14.34437 -14.20059 -13.93135 -13.49118 -13.31553 -13.08204 -12.95769 -12.80806 -12.76238 -12.61219 -12.50139 -12.27734 -12.25279 -11.94086 -11.81886 -11.77612 -11.59970 -11.49003 -11.44248 -11.04824 -10.81762 -10.55387 -10.40655 -9.59873 -8.86709 -8.59077 -7.81178 -5.24830 0.46971 0.56467 1.45601 1.47346 1.54556 2.41809 2.53860 2.85458 3.36921 3.58597 3.84434 3.95861 4.01774 4.04111 4.13195 4.21130 4.31664 4.41976 4.43535 4.45910 4.53103 4.55053 4.62664 4.70414 4.72875 4.75908 4.79059 4.81262 4.85601 4.94677 4.97786 5.06772 5.12953 5.16732 5.25206 5.32644 5.32873 5.39502 5.41060 5.46983 5.49636 5.50693 5.56468 5.62081 5.70841 5.83959 5.89570 5.95475 6.03370 6.42468 6.55928 7.19779 7.88997 8.45763 9.27786 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011816 B = 0.004921 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.086004 B = 5688.923839 C = 7666.784452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.342 6.342 3 C 0.113 3.887 4 C -0.209 4.209 5 C -0.080 4.080 6 C -0.118 4.118 7 C -0.064 4.064 8 C -0.178 4.178 9 C 0.223 3.777 10 N -0.599 5.599 11 C -0.221 4.221 12 H 0.076 0.924 13 C -0.052 4.052 14 N -0.942 5.942 15 Si 0.952 3.048 16 H -0.292 1.292 17 H -0.299 1.299 18 H -0.265 1.265 19 C 0.171 3.829 20 H 0.015 0.985 21 C -0.062 4.062 22 C -0.109 4.109 23 C -0.113 4.113 24 C -0.113 4.113 25 C -0.115 4.115 26 C -0.112 4.112 27 C -0.077 4.077 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.158 0.842 32 H 0.154 0.846 33 H 0.109 0.891 34 H 0.005 0.995 35 H 0.058 0.942 36 H 0.245 0.755 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.050 0.950 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.038 0.962 48 H 0.093 0.907 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.306 8.524 -2.601 16.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.068 3.932 4 C -0.227 4.227 5 C -0.098 4.098 6 C -0.118 4.118 7 C -0.066 4.066 8 C -0.197 4.197 9 C 0.097 3.903 10 N -0.322 5.322 11 C -0.351 4.351 12 H 0.093 0.907 13 C -0.247 4.247 14 N -0.590 5.590 15 Si 0.782 3.218 16 H -0.220 1.220 17 H -0.226 1.226 18 H -0.189 1.189 19 C 0.066 3.934 20 H 0.033 0.967 21 C -0.081 4.081 22 C -0.147 4.147 23 C -0.150 4.150 24 C -0.150 4.150 25 C -0.152 4.152 26 C -0.149 4.149 27 C -0.116 4.116 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.136 0.864 31 H 0.175 0.825 32 H 0.171 0.829 33 H 0.127 0.873 34 H 0.023 0.977 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.057 0.943 48 H 0.111 0.889 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.087 8.235 -2.585 16.521 hybrid contribution 1.189 -0.962 0.632 1.655 sum -12.898 7.273 -1.953 14.936 Atomic orbital electron populations 1.23335 0.76389 1.05434 1.02332 1.86030 1.23625 1.26909 1.89043 1.18901 0.91609 0.85169 0.97474 1.21349 1.00915 0.91374 1.09045 1.21282 0.93013 0.98318 0.97216 1.19756 0.93840 0.95042 1.03208 1.20531 0.97538 0.92536 0.95955 1.20334 0.92463 0.97694 1.09202 1.19251 0.85469 0.87982 0.97556 1.44205 1.37072 1.01075 1.49837 1.19249 0.99062 1.01940 1.14826 0.90691 1.25714 0.99429 0.98791 1.00740 1.70134 1.36467 1.12990 1.39401 0.85469 0.78708 0.78071 0.79583 1.21954 1.22611 1.18903 1.20675 0.91189 0.88441 0.93132 0.96727 1.21007 0.94640 0.92937 0.99506 1.21619 0.98824 0.93629 1.00634 1.21499 0.95756 0.97089 1.00676 1.21514 0.95923 0.97528 1.00058 1.21488 0.98494 0.94930 1.00319 1.21540 0.96793 0.97870 0.98716 1.20883 0.96528 0.92507 1.01661 0.91687 0.91504 0.86445 0.82475 0.82878 0.87313 0.97683 0.92359 0.94527 0.92508 0.92151 0.90682 0.92434 0.90263 0.91090 0.92109 0.93070 0.92769 0.92610 0.94348 0.88853 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.82 113.37 1.11 1.45 16 2 O -0.34 -10.22 10.50 -92.46 -0.97 -11.19 16 3 C 0.11 3.81 6.68 22.44 0.15 3.96 16 4 C -0.21 -5.74 9.04 22.29 0.20 -5.54 16 5 C -0.08 -2.31 9.58 22.36 0.21 -2.10 16 6 C -0.12 -4.32 5.77 -19.82 -0.11 -4.44 16 7 C -0.06 -2.77 5.82 -19.82 -0.12 -2.89 16 8 C -0.18 -7.20 9.56 22.44 0.21 -6.99 16 9 C 0.22 11.52 4.79 85.64 0.41 11.93 16 10 N -0.60 -29.86 2.94 -680.33 -2.00 -31.86 16 11 C -0.22 -11.71 6.54 84.03 0.55 -11.16 16 12 H 0.08 3.87 6.02 -2.91 -0.02 3.85 16 13 C -0.05 -2.93 5.09 84.86 0.43 -2.49 16 14 N -0.94 -56.45 11.07 21.65 0.24 -56.21 16 15 Si 0.95 45.51 29.57 68.60 2.03 47.54 16 16 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 17 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 18 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 19 C 0.17 6.91 2.43 44.78 0.11 7.02 16 20 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 21 C -0.06 -2.19 1.27 -10.79 -0.01 -2.20 16 22 C -0.11 -2.83 4.72 30.60 0.14 -2.69 16 23 C -0.11 -2.52 5.92 30.60 0.18 -2.34 16 24 C -0.11 -2.68 5.92 30.60 0.18 -2.50 16 25 C -0.11 -3.51 5.92 30.58 0.18 -3.33 16 26 C -0.11 -4.22 4.89 30.58 0.15 -4.07 16 27 C -0.08 -2.61 4.24 29.75 0.13 -2.48 16 28 H 0.06 0.99 7.67 -2.38 -0.02 0.97 16 29 H 0.07 0.99 7.67 -2.38 -0.02 0.97 16 30 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.16 3.05 6.33 -2.91 -0.02 3.03 16 32 H 0.15 3.22 8.05 -2.91 -0.02 3.20 16 33 H 0.11 4.58 8.05 -2.91 -0.02 4.55 16 34 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.06 3.39 6.48 -2.38 -0.02 3.37 16 36 H 0.25 14.47 8.31 -92.71 -0.77 13.69 16 37 H 0.06 2.19 6.60 -2.39 -0.02 2.17 16 38 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.07 1.72 6.65 -2.39 -0.02 1.70 16 40 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.06 2.64 5.71 -2.39 -0.01 2.62 16 47 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.09 2.49 7.10 -2.39 -0.02 2.48 16 49 H 0.07 2.28 8.07 -2.39 -0.02 2.27 16 Total: -1.00 -66.34 365.69 4.33 -62.01 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.92 Total: 20.56 kcal Atomic # 6 Polarization: -34.97 SS G_CDS: 4.11 Total: -30.85 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -1.76 Total: -88.07 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -0.97 Total: -11.19 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -66.34 4.33 -62.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444753363.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.641 kcal (2) G-P(sol) polarization free energy of solvation -66.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds