Wall clock time and date at job start Tue Mar 31 2020 11:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 C 1.53000 * 109.47134 * 119.99827 * 2 1 3 5 5 C 1.50701 * 109.47173 * 184.99641 * 4 2 1 6 6 C 1.33990 * 126.91223 * 264.69017 * 5 4 2 7 7 O 1.34448 * 110.15908 * 179.88750 * 6 5 4 8 8 C 1.34811 * 110.88438 * 0.38977 * 7 6 5 9 9 C 1.38943 * 133.49458 * 179.78800 * 8 7 6 10 10 C 1.37842 * 119.81685 * 179.97438 * 9 8 7 11 11 C 1.38747 * 120.68945 * 0.02562 * 10 9 8 12 12 C 1.36737 * 120.41118 * 0.02562 * 11 10 9 13 13 C 1.39406 * 119.72091 * 359.97438 * 12 11 10 14 14 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 15 15 C 1.46901 * 110.99793 * 85.00144 * 14 2 1 16 16 C 1.53000 * 109.46769 * 180.02562 * 15 14 2 17 17 C 1.53002 * 109.47233 * 299.99531 * 16 15 14 18 18 C 1.52996 * 109.47328 * 60.00000 * 16 15 14 19 19 C 1.53001 * 109.46886 * 180.02562 * 16 15 14 20 20 C 1.50697 * 109.47291 * 179.97438 * 19 16 15 21 21 H 1.08006 * 119.99920 * 359.97438 * 20 19 16 22 22 C 1.37876 * 120.00428 * 179.97438 * 20 19 16 23 23 N 1.31519 * 119.99563 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00432 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47116 * 59.99479 * 24 22 20 26 26 H 1.48490 * 109.47381 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46756 * 300.00079 * 24 22 20 28 28 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 30 30 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 31 31 H 1.08996 * 109.47600 * 304.99945 * 4 2 1 32 32 H 1.09003 * 109.47172 * 65.00406 * 4 2 1 33 33 H 1.08011 * 124.92287 * 359.97438 * 6 5 4 34 34 H 1.07999 * 120.09328 * 359.96167 * 9 8 7 35 35 H 1.08009 * 119.65824 * 179.97438 * 10 9 8 36 36 H 1.07993 * 119.79367 * 180.02562 * 11 10 9 37 37 H 1.08001 * 120.14183 * 180.02562 * 12 11 10 38 38 H 1.00899 * 110.99995 * 321.04542 * 14 2 1 39 39 H 1.09002 * 109.47401 * 59.99808 * 15 14 2 40 40 H 1.09001 * 109.46874 * 299.99821 * 15 14 2 41 41 H 1.09000 * 109.46986 * 60.00203 * 17 16 15 42 42 H 1.08993 * 109.47662 * 180.02562 * 17 16 15 43 43 H 1.09002 * 109.47075 * 300.00932 * 17 16 15 44 44 H 1.08992 * 109.47554 * 59.99639 * 18 16 15 45 45 H 1.09004 * 109.47108 * 179.97438 * 18 16 15 46 46 H 1.09000 * 109.46870 * 299.99783 * 18 16 15 47 47 H 1.09001 * 109.47109 * 299.99380 * 19 16 15 48 48 H 1.09002 * 109.47508 * 59.99571 * 19 16 15 49 49 H 0.97000 * 119.99425 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6150 1.3127 6 6 4.4316 -1.5151 0.8728 7 8 5.6830 -1.0771 1.0962 8 6 5.6696 0.1277 1.7010 9 6 6.6681 0.9884 2.1400 10 6 6.3289 2.1836 2.7371 11 6 4.9983 2.5384 2.9061 12 6 4.0006 1.7050 2.4820 13 6 4.3241 0.4921 1.8758 14 7 2.0196 -0.6925 -1.1995 15 6 2.0824 0.2226 -2.3469 16 6 2.5949 -0.5333 -3.5745 17 6 3.9920 -1.0864 -3.2863 18 6 1.6450 -1.6889 -3.8952 19 6 2.6609 0.4200 -4.7694 20 6 3.1663 -0.3242 -5.9784 21 1 3.4159 -1.3723 -5.9021 22 6 3.3101 0.3327 -7.1821 23 7 3.0057 1.6088 -7.2752 24 14 3.9359 -0.5900 -8.6809 25 1 3.0139 -1.7117 -8.9923 26 1 4.0001 0.3352 -9.8406 27 1 5.2919 -1.1269 -8.4010 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6054 -0.2617 2.1370 32 1 1.7517 -1.7715 1.2056 33 1 4.1800 -2.4556 0.4052 34 1 7.7070 0.7218 2.0140 35 1 7.1071 2.8506 3.0779 36 1 4.7490 3.4785 3.3754 37 1 2.9662 1.9857 2.6153 38 1 1.4495 -1.4980 -1.4100 39 1 2.7588 1.0462 -2.1183 40 1 1.0870 0.6163 -2.5525 41 1 3.9455 -1.7653 -2.4349 42 1 4.3574 -1.6244 -4.1609 43 1 4.6687 -0.2630 -3.0577 44 1 0.6497 -1.2950 -4.1005 45 1 2.0099 -2.2271 -4.7701 46 1 1.5984 -2.3679 -3.0438 47 1 1.6658 0.8144 -4.9750 48 1 3.3379 1.2431 -4.5407 49 1 3.1065 2.0708 -8.1221 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449330629.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:13 Heat of formation + Delta-G solvation = 3.356514 kcal Electronic energy + Delta-G solvation = -26657.132536 eV Core-core repulsion = 23163.502938 eV Total energy + Delta-G solvation = -3493.629598 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -42.35547 -38.14260 -37.85049 -35.96627 -33.26401 -32.26092 -30.57012 -30.01877 -29.30110 -26.85202 -26.67722 -26.29815 -25.00204 -23.29086 -22.46155 -22.28904 -20.98098 -19.91069 -17.85659 -17.26170 -16.96154 -16.21081 -15.97925 -15.77617 -15.22217 -14.90179 -14.44055 -14.21223 -14.08410 -13.81076 -13.37683 -13.16179 -13.11500 -12.83272 -12.65214 -12.34438 -12.30147 -11.99795 -11.91283 -11.66579 -11.53771 -11.50054 -11.06119 -10.94841 -10.86618 -10.76116 -10.71032 -10.45913 -10.23205 -10.12652 -9.82181 -9.65238 -8.98262 -8.80787 -8.62944 -8.29138 -8.08272 -7.96501 -5.93827 -3.93915 0.94150 1.35272 2.47695 2.91062 3.35964 3.40597 3.42780 3.69583 4.39934 4.49158 4.52487 4.63626 4.84963 4.89848 5.08086 5.14556 5.22253 5.34263 5.37393 5.41859 5.46297 5.53743 5.65300 5.71360 5.73662 5.79116 5.82113 5.95737 5.99775 6.02316 6.16791 6.25419 6.26953 6.32300 6.38636 6.40359 6.52453 6.55644 6.65317 6.68598 6.82527 6.86112 7.24535 7.24955 7.27854 7.29959 7.46103 7.71786 7.76749 7.89268 8.06562 8.51032 9.11293 9.68681 11.17849 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014430 B = 0.003274 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.911366 B = 8549.061911 C = 9323.823947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.085 3.915 3 H 0.075 0.925 4 C -0.034 4.034 5 C -0.158 4.158 6 C 0.027 3.973 7 O -0.196 6.196 8 C 0.050 3.950 9 C -0.108 4.108 10 C -0.101 4.101 11 C -0.140 4.140 12 C -0.073 4.073 13 C -0.120 4.120 14 N -0.678 5.678 15 C 0.073 3.927 16 C -0.057 4.057 17 C -0.113 4.113 18 C -0.127 4.127 19 C 0.035 3.965 20 C -0.507 4.507 21 H 0.058 0.942 22 C 0.055 3.945 23 N -0.898 5.898 24 Si 0.887 3.113 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.277 1.277 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.204 0.796 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.336 0.664 39 H 0.062 0.938 40 H 0.022 0.978 41 H 0.041 0.959 42 H 0.052 0.948 43 H 0.037 0.963 44 H 0.039 0.961 45 H 0.063 0.937 46 H 0.033 0.967 47 H 0.011 0.989 48 H 0.013 0.987 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.145 -2.782 22.561 22.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.025 4.025 3 H 0.093 0.907 4 C -0.072 4.072 5 C -0.160 4.160 6 C -0.037 4.037 7 O -0.097 6.097 8 C 0.003 3.997 9 C -0.126 4.126 10 C -0.119 4.119 11 C -0.158 4.158 12 C -0.091 4.091 13 C -0.121 4.121 14 N -0.309 5.309 15 C -0.055 4.055 16 C -0.058 4.058 17 C -0.170 4.170 18 C -0.185 4.185 19 C -0.003 4.003 20 C -0.545 4.545 21 H 0.076 0.924 22 C -0.146 4.146 23 N -0.538 5.538 24 Si 0.715 3.285 25 H -0.204 1.204 26 H -0.214 1.214 27 H -0.203 1.203 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.221 0.779 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.156 0.844 39 H 0.081 0.919 40 H 0.040 0.960 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.052 0.948 47 H 0.030 0.970 48 H 0.032 0.968 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.759 -2.687 22.525 22.698 hybrid contribution -0.784 -0.143 -1.316 1.538 sum -0.024 -2.830 21.209 21.397 Atomic orbital electron populations 1.22507 0.97467 1.01962 1.02139 1.21524 0.91803 0.98307 0.90878 0.90689 1.19967 0.88848 1.01171 0.97180 1.20791 0.96146 0.93985 1.05052 1.23688 0.79598 1.00274 1.00174 1.84015 1.30537 1.30504 1.64631 1.19616 0.95193 0.86378 0.98561 1.19924 0.97574 0.93318 1.01786 1.20863 0.96667 0.95409 0.98971 1.20723 0.92664 1.00102 1.02348 1.20247 0.99604 0.92153 0.97072 1.19874 0.92772 0.96545 1.02938 1.60643 1.56515 1.09930 1.03796 1.22080 0.98557 0.94894 0.89990 1.20613 0.94837 0.96076 0.94259 1.21565 0.95927 0.99771 0.99735 1.21753 0.98665 0.97845 1.00189 1.19106 0.96743 0.93676 0.90769 1.21203 1.42890 0.96268 0.94148 0.92385 1.25013 0.95878 0.94828 0.98846 1.69961 1.49202 1.08982 1.25632 0.86735 0.79458 0.79618 0.82646 1.20370 1.21447 1.20316 0.92533 0.92479 0.92370 0.91198 0.90951 0.77904 0.85343 0.85150 0.85720 0.85971 0.84441 0.91913 0.96000 0.94013 0.92865 0.94379 0.94206 0.91841 0.94844 0.97027 0.96815 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 9.16 37.16 0.34 -1.50 16 2 C 0.09 0.99 2.58 -67.71 -0.17 0.82 16 3 H 0.07 1.00 7.80 -51.93 -0.40 0.59 16 4 C -0.03 -0.34 5.45 -27.88 -0.15 -0.49 16 5 C -0.16 -1.94 5.34 -102.66 -0.55 -2.49 16 6 C 0.03 0.34 11.89 29.24 0.35 0.69 16 7 O -0.20 -2.78 10.58 3.91 0.04 -2.73 16 8 C 0.05 0.69 7.42 -38.47 -0.29 0.40 16 9 C -0.11 -1.25 10.07 -39.46 -0.40 -1.64 16 10 C -0.10 -1.00 10.01 -39.54 -0.40 -1.40 16 11 C -0.14 -1.41 9.98 -39.94 -0.40 -1.80 16 12 C -0.07 -0.82 10.05 -39.69 -0.40 -1.22 16 13 C -0.12 -1.59 6.38 -105.16 -0.67 -2.26 16 14 N -0.68 -9.18 5.18 -106.72 -0.55 -9.73 16 15 C 0.07 1.26 4.45 -3.82 -0.02 1.25 16 16 C -0.06 -1.14 0.60 -154.51 -0.09 -1.23 16 17 C -0.11 -2.21 8.06 37.16 0.30 -1.91 16 18 C -0.13 -2.33 7.89 37.16 0.29 -2.03 16 19 C 0.03 0.88 4.04 -27.88 -0.11 0.77 16 20 C -0.51 -13.99 7.65 -34.44 -0.26 -14.25 16 21 H 0.06 1.55 5.68 -52.48 -0.30 1.26 16 22 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 23 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 24 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.20 2.00 8.06 -52.48 -0.42 1.57 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 35 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.34 4.31 6.51 -39.29 -0.26 4.05 16 39 H 0.06 1.18 8.06 -51.93 -0.42 0.76 16 40 H 0.02 0.38 7.44 -51.93 -0.39 0.00 16 41 H 0.04 0.71 7.60 -51.93 -0.39 0.32 16 42 H 0.05 1.12 6.61 -51.93 -0.34 0.77 16 43 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.06 1.27 6.62 -51.93 -0.34 0.93 16 46 H 0.03 0.51 6.57 -51.93 -0.34 0.16 16 47 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 390.44 15.07 5.88 5.88 Total: -1.00 -30.99 390.44 -9.84 -40.83 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -8.20 Total: 2.23 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: -2.72 Total: -26.85 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.18 Total: -36.13 kcal Atomic # 8 Polarization: -2.78 SS G_CDS: 0.04 Total: -2.73 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.99 -9.84 -40.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449330629.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.191 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds