Wall clock time and date at job start Tue Mar 31 2020 11:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 C 1.53000 * 109.47134 * 119.99827 * 2 1 3 5 5 C 1.50701 * 109.47173 * 184.99641 * 4 2 1 6 6 C 1.33990 * 126.91223 * 264.69017 * 5 4 2 7 7 O 1.34448 * 110.15908 * 179.88750 * 6 5 4 8 8 C 1.34811 * 110.88438 * 0.38977 * 7 6 5 9 9 C 1.38943 * 133.49458 * 179.78800 * 8 7 6 10 10 C 1.37842 * 119.81685 * 179.97438 * 9 8 7 11 11 C 1.38747 * 120.68945 * 0.02562 * 10 9 8 12 12 C 1.36737 * 120.41118 * 0.02562 * 11 10 9 13 13 C 1.39406 * 119.72091 * 359.97438 * 12 11 10 14 14 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 15 15 C 1.46901 * 110.99793 * 85.00144 * 14 2 1 16 16 C 1.53000 * 109.46769 * 180.02562 * 15 14 2 17 17 C 1.53002 * 109.47233 * 299.99531 * 16 15 14 18 18 C 1.52996 * 109.47328 * 60.00000 * 16 15 14 19 19 C 1.53001 * 109.46886 * 180.02562 * 16 15 14 20 20 C 1.50697 * 109.47291 * 179.97438 * 19 16 15 21 21 H 1.08006 * 119.99920 * 359.97438 * 20 19 16 22 22 C 1.37876 * 120.00428 * 179.97438 * 20 19 16 23 23 N 1.31519 * 119.99563 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00432 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47116 * 59.99479 * 24 22 20 26 26 H 1.48490 * 109.47381 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46756 * 300.00079 * 24 22 20 28 28 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 30 30 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 31 31 H 1.08996 * 109.47600 * 304.99945 * 4 2 1 32 32 H 1.09003 * 109.47172 * 65.00406 * 4 2 1 33 33 H 1.08011 * 124.92287 * 359.97438 * 6 5 4 34 34 H 1.07999 * 120.09328 * 359.96167 * 9 8 7 35 35 H 1.08009 * 119.65824 * 179.97438 * 10 9 8 36 36 H 1.07993 * 119.79367 * 180.02562 * 11 10 9 37 37 H 1.08001 * 120.14183 * 180.02562 * 12 11 10 38 38 H 1.00899 * 110.99995 * 321.04542 * 14 2 1 39 39 H 1.09002 * 109.47401 * 59.99808 * 15 14 2 40 40 H 1.09001 * 109.46874 * 299.99821 * 15 14 2 41 41 H 1.09000 * 109.46986 * 60.00203 * 17 16 15 42 42 H 1.08993 * 109.47662 * 180.02562 * 17 16 15 43 43 H 1.09002 * 109.47075 * 300.00932 * 17 16 15 44 44 H 1.08992 * 109.47554 * 59.99639 * 18 16 15 45 45 H 1.09004 * 109.47108 * 179.97438 * 18 16 15 46 46 H 1.09000 * 109.46870 * 299.99783 * 18 16 15 47 47 H 1.09001 * 109.47109 * 299.99380 * 19 16 15 48 48 H 1.09002 * 109.47508 * 59.99571 * 19 16 15 49 49 H 0.97000 * 119.99425 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6150 1.3127 6 6 4.4316 -1.5151 0.8728 7 8 5.6830 -1.0771 1.0962 8 6 5.6696 0.1277 1.7010 9 6 6.6681 0.9884 2.1400 10 6 6.3289 2.1836 2.7371 11 6 4.9983 2.5384 2.9061 12 6 4.0006 1.7050 2.4820 13 6 4.3241 0.4921 1.8758 14 7 2.0196 -0.6925 -1.1995 15 6 2.0824 0.2226 -2.3469 16 6 2.5949 -0.5333 -3.5745 17 6 3.9920 -1.0864 -3.2863 18 6 1.6450 -1.6889 -3.8952 19 6 2.6609 0.4200 -4.7694 20 6 3.1663 -0.3242 -5.9784 21 1 3.4159 -1.3723 -5.9021 22 6 3.3101 0.3327 -7.1821 23 7 3.0057 1.6088 -7.2752 24 14 3.9359 -0.5900 -8.6809 25 1 3.0139 -1.7117 -8.9923 26 1 4.0001 0.3352 -9.8406 27 1 5.2919 -1.1269 -8.4010 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6054 -0.2617 2.1370 32 1 1.7517 -1.7715 1.2056 33 1 4.1800 -2.4556 0.4052 34 1 7.7070 0.7218 2.0140 35 1 7.1071 2.8506 3.0779 36 1 4.7490 3.4785 3.3754 37 1 2.9662 1.9857 2.6153 38 1 1.4495 -1.4980 -1.4100 39 1 2.7588 1.0462 -2.1183 40 1 1.0870 0.6163 -2.5525 41 1 3.9455 -1.7653 -2.4349 42 1 4.3574 -1.6244 -4.1609 43 1 4.6687 -0.2630 -3.0577 44 1 0.6497 -1.2950 -4.1005 45 1 2.0099 -2.2271 -4.7701 46 1 1.5984 -2.3679 -3.0438 47 1 1.6658 0.8144 -4.9750 48 1 3.3379 1.2431 -4.5407 49 1 3.1065 2.0708 -8.1221 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449330629.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:11 Heat of formation + Delta-G solvation = -12.649468 kcal Electronic energy + Delta-G solvation = -26657.826607 eV Core-core repulsion = 23163.502938 eV Total energy + Delta-G solvation = -3494.323669 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.25717 -39.49482 -38.68305 -37.29905 -34.73059 -33.88048 -31.51410 -31.08680 -30.22979 -28.81436 -27.88333 -27.50835 -26.57398 -24.35212 -24.13056 -23.14322 -21.98598 -20.82610 -19.48834 -18.34197 -18.10869 -17.88645 -16.94720 -16.72116 -16.52767 -16.21695 -15.99801 -15.53604 -15.02436 -14.74059 -14.62571 -14.52969 -14.37314 -14.09086 -13.86302 -13.78996 -13.38001 -13.15126 -13.12664 -12.89614 -12.75425 -12.67024 -12.48317 -12.43907 -12.33092 -12.25632 -12.11944 -11.92054 -11.87846 -11.58146 -11.37659 -10.86662 -10.82900 -10.60628 -10.50981 -9.51217 -9.18083 -8.90389 -8.14644 -6.22059 0.09057 0.48140 1.39640 1.42304 1.49505 1.58204 2.04672 2.42967 2.84173 3.19033 3.33105 3.64458 3.77655 3.99584 4.14255 4.16802 4.20322 4.24335 4.35279 4.40840 4.42376 4.48469 4.55646 4.66943 4.73008 4.73987 4.81868 4.88238 4.93223 4.95646 5.01165 5.09105 5.14992 5.16573 5.21960 5.26483 5.33471 5.38877 5.45270 5.51447 5.53263 5.57664 5.58846 5.66844 5.69730 5.84810 5.88181 5.92345 6.17547 6.35097 6.37473 6.68470 6.93097 7.45364 8.97674 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014430 B = 0.003274 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.911366 B = 8549.061911 C = 9323.823947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.089 3.911 3 H 0.053 0.947 4 C -0.025 4.025 5 C -0.165 4.165 6 C 0.012 3.988 7 O -0.215 6.215 8 C 0.016 3.984 9 C -0.125 4.125 10 C -0.099 4.099 11 C -0.141 4.141 12 C -0.086 4.086 13 C -0.144 4.144 14 N -0.671 5.671 15 C 0.091 3.909 16 C -0.053 4.053 17 C -0.101 4.101 18 C -0.119 4.119 19 C 0.041 3.959 20 C -0.515 4.515 21 H 0.067 0.933 22 C -0.005 4.005 23 N -0.939 5.939 24 Si 0.956 3.044 25 H -0.265 1.265 26 H -0.288 1.288 27 H -0.269 1.269 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.225 0.775 34 H 0.140 0.860 35 H 0.161 0.839 36 H 0.153 0.847 37 H 0.138 0.862 38 H 0.346 0.654 39 H 0.039 0.961 40 H 0.016 0.984 41 H 0.072 0.928 42 H 0.037 0.963 43 H 0.017 0.983 44 H 0.036 0.964 45 H 0.045 0.955 46 H 0.073 0.927 47 H -0.017 1.017 48 H -0.024 1.024 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.672 -4.181 24.024 24.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.021 4.021 3 H 0.072 0.928 4 C -0.063 4.063 5 C -0.166 4.166 6 C -0.052 4.052 7 O -0.118 6.118 8 C -0.031 4.031 9 C -0.143 4.143 10 C -0.116 4.116 11 C -0.159 4.159 12 C -0.104 4.104 13 C -0.145 4.145 14 N -0.303 5.303 15 C -0.039 4.039 16 C -0.054 4.054 17 C -0.159 4.159 18 C -0.176 4.176 19 C 0.003 3.997 20 C -0.553 4.553 21 H 0.085 0.915 22 C -0.201 4.201 23 N -0.580 5.580 24 Si 0.782 3.218 25 H -0.190 1.190 26 H -0.213 1.213 27 H -0.195 1.195 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.242 0.758 34 H 0.158 0.842 35 H 0.179 0.821 36 H 0.171 0.829 37 H 0.155 0.845 38 H 0.166 0.834 39 H 0.057 0.943 40 H 0.034 0.966 41 H 0.091 0.909 42 H 0.056 0.944 43 H 0.036 0.964 44 H 0.055 0.945 45 H 0.064 0.936 46 H 0.091 0.909 47 H 0.001 0.999 48 H -0.006 1.006 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.225 -4.106 24.008 24.358 hybrid contribution -0.597 0.391 -1.687 1.832 sum -0.373 -3.715 22.321 22.631 Atomic orbital electron populations 1.22430 0.95864 1.02984 1.02150 1.21513 0.92969 0.97218 0.90434 0.92832 1.19966 0.87425 1.02223 0.96683 1.21088 0.97174 0.93635 1.04725 1.24186 0.79199 1.01222 1.00582 1.83974 1.31616 1.30999 1.65164 1.20103 0.96367 0.86834 0.99785 1.20296 0.98022 0.93828 1.02171 1.21298 0.97665 0.95011 0.97669 1.21146 0.92471 1.00822 1.01438 1.20567 1.00908 0.91875 0.97090 1.20235 0.92889 0.97601 1.03739 1.60549 1.57341 1.09500 1.02897 1.21689 0.97379 0.94504 0.90315 1.20471 0.96031 0.95757 0.93097 1.21453 0.94960 0.99310 1.00141 1.21654 0.97578 0.97329 1.01062 1.18992 0.93857 0.93691 0.93113 1.21597 1.42120 0.96745 0.94829 0.91518 1.25941 0.96226 0.95654 1.02325 1.70115 1.50704 1.10776 1.26430 0.85628 0.79226 0.78451 0.78537 1.19018 1.21329 1.19451 0.90962 0.90772 0.94100 0.89610 0.89061 0.75833 0.84190 0.82107 0.82894 0.84454 0.83371 0.94261 0.96574 0.90948 0.94431 0.96407 0.94518 0.93617 0.90875 0.99890 1.00565 0.93185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 9.16 71.98 0.66 -2.47 16 2 C 0.09 1.91 2.58 44.91 0.12 2.02 16 3 H 0.05 1.40 7.80 -2.39 -0.02 1.38 16 4 C -0.03 -0.45 5.45 29.85 0.16 -0.29 16 5 C -0.16 -3.88 5.34 -18.60 -0.10 -3.98 16 6 C 0.01 0.29 11.89 66.85 0.79 1.08 16 7 O -0.22 -6.21 10.58 -8.94 -0.09 -6.31 16 8 C 0.02 0.45 7.42 22.99 0.17 0.62 16 9 C -0.12 -2.87 10.07 22.35 0.23 -2.64 16 10 C -0.10 -1.81 10.01 22.30 0.22 -1.59 16 11 C -0.14 -2.58 9.98 22.04 0.22 -2.36 16 12 C -0.09 -1.87 10.05 22.20 0.22 -1.65 16 13 C -0.14 -3.75 6.38 -20.21 -0.13 -3.87 16 14 N -0.67 -17.08 5.18 -491.55 -2.54 -19.63 16 15 C 0.09 3.14 4.45 86.30 0.38 3.53 16 16 C -0.05 -2.13 0.60 -52.18 -0.03 -2.16 16 17 C -0.10 -3.96 8.06 71.98 0.58 -3.38 16 18 C -0.12 -4.18 7.89 71.98 0.57 -3.62 16 19 C 0.04 2.18 4.04 29.85 0.12 2.30 16 20 C -0.51 -29.00 7.65 25.60 0.20 -28.80 16 21 H 0.07 3.58 5.68 -2.91 -0.02 3.56 16 22 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 23 N -0.94 -58.49 13.29 21.45 0.28 -58.20 16 24 Si 0.96 45.03 29.54 68.60 2.03 47.06 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 26 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 27 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 28 H 0.07 1.08 8.13 -2.39 -0.02 1.07 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.04 0.88 7.45 -2.39 -0.02 0.86 16 31 H 0.09 1.29 8.14 -2.39 -0.02 1.28 16 32 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.23 4.01 8.06 -2.91 -0.02 3.99 16 34 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 35 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 36 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 37 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 38 H 0.35 7.78 6.51 -89.69 -0.58 7.19 16 39 H 0.04 1.54 8.06 -2.39 -0.02 1.52 16 40 H 0.02 0.57 7.44 -2.39 -0.02 0.56 16 41 H 0.07 2.36 7.60 -2.39 -0.02 2.34 16 42 H 0.04 1.56 6.61 -2.39 -0.02 1.54 16 43 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.04 1.29 8.14 -2.39 -0.02 1.28 16 45 H 0.04 1.77 6.62 -2.38 -0.02 1.75 16 46 H 0.07 1.99 6.57 -2.39 -0.02 1.97 16 47 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 48 H -0.02 -1.44 8.14 -2.39 -0.02 -1.46 16 49 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -70.30 390.44 4.86 -65.44 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.34 Total: 18.70 kcal Atomic # 6 Polarization: -51.91 SS G_CDS: 4.85 Total: -47.06 kcal Atomic # 7 Polarization: -75.57 SS G_CDS: -2.26 Total: -77.83 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.09 Total: -6.31 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -70.30 4.86 -65.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449330629.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.790 kcal (2) G-P(sol) polarization free energy of solvation -70.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds