Wall clock time and date at job start Tue Mar 31 2020 11:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46953 * 2 1 4 4 C 1.53002 * 109.46899 * 239.99597 * 2 1 3 5 5 C 1.50703 * 109.46689 * 175.00139 * 4 2 1 6 6 C 1.33992 * 126.90712 * 265.04313 * 5 4 2 7 7 O 1.34456 * 110.15390 * 179.97438 * 6 5 4 8 8 C 1.34808 * 110.88891 * 359.97438 * 7 6 5 9 9 C 1.38938 * 133.49475 * 180.02562 * 8 7 6 10 10 C 1.37850 * 119.81684 * 179.97438 * 9 8 7 11 11 C 1.38739 * 120.68338 * 359.75904 * 10 9 8 12 12 C 1.36732 * 120.42108 * 0.50563 * 11 10 9 13 13 C 1.39408 * 119.71164 * 359.47850 * 12 11 10 14 14 N 1.46905 * 109.46948 * 119.99576 * 2 1 3 15 15 C 1.46898 * 111.00158 * 275.00065 * 14 2 1 16 16 C 1.52992 * 109.47100 * 179.97438 * 15 14 2 17 17 C 1.52997 * 109.47373 * 299.99884 * 16 15 14 18 18 C 1.52999 * 109.47330 * 59.99832 * 16 15 14 19 19 C 1.53002 * 109.47243 * 179.97438 * 16 15 14 20 20 C 1.50699 * 109.47429 * 179.97438 * 19 16 15 21 21 H 1.07999 * 119.99856 * 359.97438 * 20 19 16 22 22 C 1.37875 * 120.00232 * 180.02562 * 20 19 16 23 23 N 1.31520 * 119.99761 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00444 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47259 * 89.99458 * 24 22 20 26 26 H 1.48498 * 109.47375 * 210.00369 * 24 22 20 27 27 H 1.48507 * 109.46827 * 329.99758 * 24 22 20 28 28 H 1.08998 * 109.46953 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47298 * 300.00386 * 1 2 3 30 30 H 1.09001 * 109.46949 * 60.00410 * 1 2 3 31 31 H 1.08992 * 109.47113 * 55.00343 * 4 2 1 32 32 H 1.09006 * 109.47052 * 294.99588 * 4 2 1 33 33 H 1.08001 * 124.92348 * 359.94496 * 6 5 4 34 34 H 1.08007 * 120.08945 * 359.94832 * 9 8 7 35 35 H 1.08001 * 119.65143 * 179.97438 * 10 9 8 36 36 H 1.08003 * 119.78647 * 180.25892 * 11 10 9 37 37 H 1.08002 * 120.14706 * 179.76235 * 12 11 10 38 38 H 1.00900 * 110.99699 * 151.04499 * 14 2 1 39 39 H 1.09001 * 109.46721 * 300.00478 * 15 14 2 40 40 H 1.09004 * 109.47039 * 60.00120 * 15 14 2 41 41 H 1.09004 * 109.47343 * 59.99927 * 17 16 15 42 42 H 1.08999 * 109.47636 * 180.02562 * 17 16 15 43 43 H 1.09004 * 109.47234 * 300.00162 * 17 16 15 44 44 H 1.09008 * 109.47048 * 60.00165 * 18 16 15 45 45 H 1.09001 * 109.47197 * 179.97438 * 18 16 15 46 46 H 1.08993 * 109.47281 * 300.00083 * 18 16 15 47 47 H 1.09003 * 109.47261 * 300.00607 * 19 16 15 48 48 H 1.09004 * 109.46860 * 60.00146 * 19 16 15 49 49 H 0.96998 * 119.99884 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 6 4.2563 0.2985 -1.9839 7 8 5.5711 0.0798 -1.8070 8 6 5.7779 -0.9880 -1.0105 9 6 6.9205 -1.6160 -0.5305 10 6 6.8039 -2.7184 0.2889 11 6 5.5551 -3.2068 0.6450 12 6 4.4183 -2.6067 0.1791 13 6 4.5164 -1.4904 -0.6502 14 7 2.0197 -0.6924 1.1995 15 6 2.0825 0.2227 2.3469 16 6 2.5950 -0.5330 3.5745 17 6 1.6451 -1.6887 3.8953 18 6 3.9920 -1.0862 3.2864 19 6 2.6610 0.4203 4.7694 20 6 3.1652 -0.3242 5.9788 21 1 3.4133 -1.3725 5.9028 22 6 3.3087 0.3327 7.1824 23 7 3.0051 1.6090 7.2753 24 14 3.9344 -0.5898 8.6813 25 1 5.4154 -0.4967 8.7373 26 1 3.3538 0.0097 9.9096 27 1 3.5312 -2.0161 8.5886 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6054 -0.2619 -2.1369 32 1 1.7517 -1.7717 -1.2054 33 1 3.8368 1.0948 -2.5808 34 1 7.8974 -1.2417 -0.7989 35 1 7.6938 -3.2047 0.6601 36 1 5.4805 -4.0690 1.2912 37 1 3.4485 -2.9929 0.4561 38 1 2.9173 -1.1205 1.0288 39 1 2.7588 1.0463 2.1181 40 1 1.0870 0.6164 2.5525 41 1 1.5984 -2.3678 3.0440 42 1 2.0099 -2.2268 4.7702 43 1 0.6497 -1.2946 4.1006 44 1 4.6689 -0.2628 3.0578 45 1 4.3573 -1.6242 4.1611 46 1 3.9455 -1.7652 2.4350 47 1 3.3379 1.2434 4.5406 48 1 1.6658 0.8147 4.9749 49 1 3.1064 2.0713 8.1220 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449330630.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:20 Heat of formation + Delta-G solvation = 4.890532 kcal Electronic energy + Delta-G solvation = -27341.492273 eV Core-core repulsion = 23847.929195 eV Total energy + Delta-G solvation = -3493.563078 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.56309 -38.26437 -37.79009 -35.99870 -33.16430 -32.28184 -30.70951 -30.19651 -29.26707 -26.90873 -26.82510 -26.22314 -24.93702 -23.37265 -22.53075 -22.29494 -20.97741 -19.64580 -17.83446 -17.42231 -17.07185 -16.33359 -16.14813 -15.82470 -15.60468 -14.79112 -14.50440 -14.23271 -14.01435 -13.84378 -13.47306 -13.18775 -13.02286 -12.81563 -12.53558 -12.21795 -12.17793 -11.95679 -11.93659 -11.73227 -11.56579 -11.37873 -11.11683 -10.92330 -10.87925 -10.74249 -10.67233 -10.44039 -10.18172 -10.10709 -9.90061 -9.61680 -8.95859 -8.77278 -8.67242 -8.28041 -8.22143 -7.98190 -5.92525 -3.92337 0.84465 1.31611 2.22138 2.71973 3.35301 3.41749 3.44657 3.66454 4.30837 4.45981 4.47992 4.55698 4.81695 4.93375 5.00903 5.02044 5.25753 5.30722 5.38841 5.41945 5.43256 5.56448 5.61413 5.75897 5.76735 5.84985 5.88891 5.94467 6.05951 6.08520 6.15311 6.22232 6.33081 6.37793 6.38400 6.42208 6.42790 6.57184 6.61197 6.71738 6.85908 6.88504 7.08786 7.27021 7.30306 7.31795 7.50720 7.74523 7.82991 7.91925 8.08079 8.52928 9.12950 9.70092 11.19254 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013208 B = 0.004056 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.483448 B = 6901.172700 C = 8098.373278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.084 3.916 3 H 0.040 0.960 4 C -0.052 4.052 5 C -0.176 4.176 6 C 0.002 3.998 7 O -0.195 6.195 8 C 0.051 3.949 9 C -0.110 4.110 10 C -0.090 4.090 11 C -0.130 4.130 12 C -0.066 4.066 13 C -0.127 4.127 14 N -0.687 5.687 15 C 0.070 3.930 16 C -0.057 4.057 17 C -0.115 4.115 18 C -0.129 4.129 19 C 0.034 3.966 20 C -0.504 4.504 21 H 0.059 0.941 22 C 0.054 3.946 23 N -0.898 5.898 24 Si 0.887 3.113 25 H -0.282 1.282 26 H -0.288 1.288 27 H -0.274 1.274 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.205 0.795 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.344 0.656 39 H 0.019 0.981 40 H 0.065 0.935 41 H 0.041 0.959 42 H 0.054 0.946 43 H 0.039 0.961 44 H 0.036 0.964 45 H 0.062 0.938 46 H 0.037 0.963 47 H 0.011 0.989 48 H 0.014 0.986 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.948 -6.494 -20.624 21.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.026 4.026 3 H 0.058 0.942 4 C -0.090 4.090 5 C -0.177 4.177 6 C -0.063 4.063 7 O -0.096 6.096 8 C 0.004 3.996 9 C -0.129 4.129 10 C -0.108 4.108 11 C -0.149 4.149 12 C -0.084 4.084 13 C -0.128 4.128 14 N -0.323 5.323 15 C -0.059 4.059 16 C -0.058 4.058 17 C -0.172 4.172 18 C -0.186 4.186 19 C -0.003 4.003 20 C -0.543 4.543 21 H 0.077 0.923 22 C -0.146 4.146 23 N -0.538 5.538 24 Si 0.715 3.285 25 H -0.209 1.209 26 H -0.214 1.214 27 H -0.199 1.199 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.221 0.779 34 H 0.147 0.853 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.167 0.833 39 H 0.037 0.963 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.081 0.919 46 H 0.055 0.945 47 H 0.029 0.971 48 H 0.033 0.967 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.542 -6.446 -20.446 21.494 hybrid contribution 1.026 0.360 0.793 1.346 sum 2.568 -6.086 -19.653 20.733 Atomic orbital electron populations 1.21779 0.94477 1.02237 1.01108 1.21521 0.95697 0.95840 0.89558 0.94227 1.20239 0.87948 1.02497 0.98291 1.21181 0.96331 0.97698 1.02494 1.23714 0.79638 1.00717 1.02204 1.83992 1.26283 1.42079 1.57266 1.19628 0.95711 0.88911 0.95351 1.19921 0.95468 0.96905 1.00599 1.20952 0.98213 0.95140 0.96503 1.20815 0.91980 1.01158 1.00909 1.20374 0.99559 0.93460 0.95019 1.19807 0.92308 0.98633 1.02036 1.60789 1.34294 1.33464 1.03748 1.22124 0.99904 0.93239 0.90589 1.20609 0.94148 0.96636 0.94391 1.21587 0.98235 0.97509 0.99870 1.21816 0.96822 0.99674 1.00329 1.19119 0.96869 0.93568 0.90793 1.21235 1.42686 0.96248 0.94100 0.92317 1.25013 0.95926 0.94839 0.98828 1.69974 1.49301 1.08990 1.25546 0.86676 0.78934 0.80077 0.82811 1.20856 1.21394 1.19903 0.92041 0.92357 0.93117 0.90271 0.89954 0.77868 0.85252 0.84806 0.85125 0.84970 0.83298 0.96311 0.91662 0.94030 0.92732 0.94187 0.94521 0.91857 0.94465 0.97057 0.96733 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.42 37.16 0.35 -1.22 16 2 C 0.08 1.07 2.64 -67.71 -0.18 0.89 16 3 H 0.04 0.54 7.80 -51.93 -0.40 0.13 16 4 C -0.05 -0.55 5.36 -27.88 -0.15 -0.70 16 5 C -0.18 -2.10 5.21 -102.66 -0.53 -2.63 16 6 C 0.00 0.02 11.89 29.24 0.35 0.37 16 7 O -0.19 -2.53 10.58 3.89 0.04 -2.48 16 8 C 0.05 0.68 7.42 -38.48 -0.29 0.40 16 9 C -0.11 -1.28 10.07 -39.46 -0.40 -1.68 16 10 C -0.09 -0.95 10.01 -39.54 -0.40 -1.35 16 11 C -0.13 -1.47 9.88 -39.94 -0.39 -1.87 16 12 C -0.07 -0.83 6.91 -39.69 -0.27 -1.10 16 13 C -0.13 -1.69 5.49 -105.16 -0.58 -2.26 16 14 N -0.69 -10.54 5.52 -106.72 -0.59 -11.13 16 15 C 0.07 1.30 4.44 -3.83 -0.02 1.28 16 16 C -0.06 -1.19 0.60 -154.51 -0.09 -1.29 16 17 C -0.11 -2.27 8.06 37.16 0.30 -1.97 16 18 C -0.13 -2.55 7.89 37.16 0.29 -2.25 16 19 C 0.03 0.88 4.04 -27.88 -0.11 0.77 16 20 C -0.50 -14.02 7.65 -34.44 -0.26 -14.29 16 21 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 22 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 23 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 24 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.74 7.45 -51.93 -0.39 0.35 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 35 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 37 H 0.13 1.61 7.57 -52.49 -0.40 1.21 16 38 H 0.34 5.21 2.48 -39.29 -0.10 5.11 16 39 H 0.02 0.37 8.06 -51.93 -0.42 -0.05 16 40 H 0.06 1.22 7.44 -51.93 -0.39 0.84 16 41 H 0.04 0.73 7.60 -51.93 -0.39 0.34 16 42 H 0.05 1.15 6.62 -51.93 -0.34 0.80 16 43 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.04 0.75 8.14 -51.92 -0.42 0.32 16 45 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 46 H 0.04 0.63 4.72 -51.93 -0.24 0.38 16 47 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 380.38 15.07 5.73 5.73 Total: -1.00 -31.63 380.38 -9.51 -41.14 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -7.92 Total: 3.90 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: -2.48 Total: -27.45 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.15 Total: -37.64 kcal Atomic # 8 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.48 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.63 -9.51 -41.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449330630.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.026 kcal (2) G-P(sol) polarization free energy of solvation -31.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds