Wall clock time and date at job start Tue Mar 31 2020 11:09:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08998 * 109.46953 * 2 1
4 4 C 1.53002 * 109.46899 * 239.99597 * 2 1 3
5 5 C 1.50703 * 109.46689 * 175.00139 * 4 2 1
6 6 C 1.33992 * 126.90712 * 265.04313 * 5 4 2
7 7 O 1.34456 * 110.15390 * 179.97438 * 6 5 4
8 8 C 1.34808 * 110.88891 * 359.97438 * 7 6 5
9 9 C 1.38938 * 133.49475 * 180.02562 * 8 7 6
10 10 C 1.37850 * 119.81684 * 179.97438 * 9 8 7
11 11 C 1.38739 * 120.68338 * 359.75904 * 10 9 8
12 12 C 1.36732 * 120.42108 * 0.50563 * 11 10 9
13 13 C 1.39408 * 119.71164 * 359.47850 * 12 11 10
14 14 N 1.46905 * 109.46948 * 119.99576 * 2 1 3
15 15 C 1.46898 * 111.00158 * 275.00065 * 14 2 1
16 16 C 1.52992 * 109.47100 * 179.97438 * 15 14 2
17 17 C 1.52997 * 109.47373 * 299.99884 * 16 15 14
18 18 C 1.52999 * 109.47330 * 59.99832 * 16 15 14
19 19 C 1.53002 * 109.47243 * 179.97438 * 16 15 14
20 20 C 1.50699 * 109.47429 * 179.97438 * 19 16 15
21 21 H 1.07999 * 119.99856 * 359.97438 * 20 19 16
22 22 C 1.37875 * 120.00232 * 180.02562 * 20 19 16
23 23 N 1.31520 * 119.99761 * 0.02562 * 22 20 19
24 24 Si 1.86794 * 120.00444 * 180.02562 * 22 20 19
25 25 H 1.48500 * 109.47259 * 89.99458 * 24 22 20
26 26 H 1.48498 * 109.47375 * 210.00369 * 24 22 20
27 27 H 1.48507 * 109.46827 * 329.99758 * 24 22 20
28 28 H 1.08998 * 109.46953 * 179.97438 * 1 2 3
29 29 H 1.08998 * 109.47298 * 300.00386 * 1 2 3
30 30 H 1.09001 * 109.46949 * 60.00410 * 1 2 3
31 31 H 1.08992 * 109.47113 * 55.00343 * 4 2 1
32 32 H 1.09006 * 109.47052 * 294.99588 * 4 2 1
33 33 H 1.08001 * 124.92348 * 359.94496 * 6 5 4
34 34 H 1.08007 * 120.08945 * 359.94832 * 9 8 7
35 35 H 1.08001 * 119.65143 * 179.97438 * 10 9 8
36 36 H 1.08003 * 119.78647 * 180.25892 * 11 10 9
37 37 H 1.08002 * 120.14706 * 179.76235 * 12 11 10
38 38 H 1.00900 * 110.99699 * 151.04499 * 14 2 1
39 39 H 1.09001 * 109.46721 * 300.00478 * 15 14 2
40 40 H 1.09004 * 109.47039 * 60.00120 * 15 14 2
41 41 H 1.09004 * 109.47343 * 59.99927 * 17 16 15
42 42 H 1.08999 * 109.47636 * 180.02562 * 17 16 15
43 43 H 1.09004 * 109.47234 * 300.00162 * 17 16 15
44 44 H 1.09008 * 109.47048 * 60.00165 * 18 16 15
45 45 H 1.09001 * 109.47197 * 179.97438 * 18 16 15
46 46 H 1.08993 * 109.47281 * 300.00083 * 18 16 15
47 47 H 1.09003 * 109.47261 * 300.00607 * 19 16 15
48 48 H 1.09004 * 109.46860 * 60.00146 * 19 16 15
49 49 H 0.96998 * 119.99884 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0400 -0.7214 -1.2492
5 6 3.5419 -0.6150 -1.3126
6 6 4.2563 0.2985 -1.9839
7 8 5.5711 0.0798 -1.8070
8 6 5.7779 -0.9880 -1.0105
9 6 6.9205 -1.6160 -0.5305
10 6 6.8039 -2.7184 0.2889
11 6 5.5551 -3.2068 0.6450
12 6 4.4183 -2.6067 0.1791
13 6 4.5164 -1.4904 -0.6502
14 7 2.0197 -0.6924 1.1995
15 6 2.0825 0.2227 2.3469
16 6 2.5950 -0.5330 3.5745
17 6 1.6451 -1.6887 3.8953
18 6 3.9920 -1.0862 3.2864
19 6 2.6610 0.4203 4.7694
20 6 3.1652 -0.3242 5.9788
21 1 3.4133 -1.3725 5.9028
22 6 3.3087 0.3327 7.1824
23 7 3.0051 1.6090 7.2753
24 14 3.9344 -0.5898 8.6813
25 1 5.4154 -0.4967 8.7373
26 1 3.3538 0.0097 9.9096
27 1 3.5312 -2.0161 8.5886
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3634 0.5139 0.8899
30 1 -0.3633 0.5138 -0.8900
31 1 1.6054 -0.2619 -2.1369
32 1 1.7517 -1.7717 -1.2054
33 1 3.8368 1.0948 -2.5808
34 1 7.8974 -1.2417 -0.7989
35 1 7.6938 -3.2047 0.6601
36 1 5.4805 -4.0690 1.2912
37 1 3.4485 -2.9929 0.4561
38 1 2.9173 -1.1205 1.0288
39 1 2.7588 1.0463 2.1181
40 1 1.0870 0.6164 2.5525
41 1 1.5984 -2.3678 3.0440
42 1 2.0099 -2.2268 4.7702
43 1 0.6497 -1.2946 4.1006
44 1 4.6689 -0.2628 3.0578
45 1 4.3573 -1.6242 4.1611
46 1 3.9455 -1.7652 2.4350
47 1 3.3379 1.2434 4.5406
48 1 1.6658 0.8147 4.9749
49 1 3.1064 2.0713 8.1220
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000449330630.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:09:20
Heat of formation + Delta-G solvation = 4.890532 kcal
Electronic energy + Delta-G solvation = -27341.492273 eV
Core-core repulsion = 23847.929195 eV
Total energy + Delta-G solvation = -3493.563078 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-42.56309 -38.26437 -37.79009 -35.99870 -33.16430 -32.28184 -30.70951 -30.19651
-29.26707 -26.90873 -26.82510 -26.22314 -24.93702 -23.37265 -22.53075 -22.29494
-20.97741 -19.64580 -17.83446 -17.42231 -17.07185 -16.33359 -16.14813 -15.82470
-15.60468 -14.79112 -14.50440 -14.23271 -14.01435 -13.84378 -13.47306 -13.18775
-13.02286 -12.81563 -12.53558 -12.21795 -12.17793 -11.95679 -11.93659 -11.73227
-11.56579 -11.37873 -11.11683 -10.92330 -10.87925 -10.74249 -10.67233 -10.44039
-10.18172 -10.10709 -9.90061 -9.61680 -8.95859 -8.77278 -8.67242 -8.28041
-8.22143 -7.98190 -5.92525 -3.92337 0.84465 1.31611 2.22138 2.71973
3.35301 3.41749 3.44657 3.66454 4.30837 4.45981 4.47992 4.55698
4.81695 4.93375 5.00903 5.02044 5.25753 5.30722 5.38841 5.41945
5.43256 5.56448 5.61413 5.75897 5.76735 5.84985 5.88891 5.94467
6.05951 6.08520 6.15311 6.22232 6.33081 6.37793 6.38400 6.42208
6.42790 6.57184 6.61197 6.71738 6.85908 6.88504 7.08786 7.27021
7.30306 7.31795 7.50720 7.74523 7.82991 7.91925 8.08079 8.52928
9.12950 9.70092 11.19254
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.013208 B = 0.004056 C = 0.003457
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2119.483448 B = 6901.172700 C = 8098.373278
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C 0.084 3.916
3 H 0.040 0.960
4 C -0.052 4.052
5 C -0.176 4.176
6 C 0.002 3.998
7 O -0.195 6.195
8 C 0.051 3.949
9 C -0.110 4.110
10 C -0.090 4.090
11 C -0.130 4.130
12 C -0.066 4.066
13 C -0.127 4.127
14 N -0.687 5.687
15 C 0.070 3.930
16 C -0.057 4.057
17 C -0.115 4.115
18 C -0.129 4.129
19 C 0.034 3.966
20 C -0.504 4.504
21 H 0.059 0.941
22 C 0.054 3.946
23 N -0.898 5.898
24 Si 0.887 3.113
25 H -0.282 1.282
26 H -0.288 1.288
27 H -0.274 1.274
28 H 0.060 0.940
29 H 0.057 0.943
30 H 0.050 0.950
31 H 0.079 0.921
32 H 0.082 0.918
33 H 0.205 0.795
34 H 0.130 0.870
35 H 0.134 0.866
36 H 0.131 0.869
37 H 0.133 0.867
38 H 0.344 0.656
39 H 0.019 0.981
40 H 0.065 0.935
41 H 0.041 0.959
42 H 0.054 0.946
43 H 0.039 0.961
44 H 0.036 0.964
45 H 0.062 0.938
46 H 0.037 0.963
47 H 0.011 0.989
48 H 0.014 0.986
49 H 0.258 0.742
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.948 -6.494 -20.624 21.710
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.026 4.026
3 H 0.058 0.942
4 C -0.090 4.090
5 C -0.177 4.177
6 C -0.063 4.063
7 O -0.096 6.096
8 C 0.004 3.996
9 C -0.129 4.129
10 C -0.108 4.108
11 C -0.149 4.149
12 C -0.084 4.084
13 C -0.128 4.128
14 N -0.323 5.323
15 C -0.059 4.059
16 C -0.058 4.058
17 C -0.172 4.172
18 C -0.186 4.186
19 C -0.003 4.003
20 C -0.543 4.543
21 H 0.077 0.923
22 C -0.146 4.146
23 N -0.538 5.538
24 Si 0.715 3.285
25 H -0.209 1.209
26 H -0.214 1.214
27 H -0.199 1.199
28 H 0.080 0.920
29 H 0.076 0.924
30 H 0.069 0.931
31 H 0.097 0.903
32 H 0.100 0.900
33 H 0.221 0.779
34 H 0.147 0.853
35 H 0.152 0.848
36 H 0.149 0.851
37 H 0.150 0.850
38 H 0.167 0.833
39 H 0.037 0.963
40 H 0.083 0.917
41 H 0.060 0.940
42 H 0.073 0.927
43 H 0.058 0.942
44 H 0.055 0.945
45 H 0.081 0.919
46 H 0.055 0.945
47 H 0.029 0.971
48 H 0.033 0.967
49 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges 1.542 -6.446 -20.446 21.494
hybrid contribution 1.026 0.360 0.793 1.346
sum 2.568 -6.086 -19.653 20.733
Atomic orbital electron populations
1.21779 0.94477 1.02237 1.01108 1.21521 0.95697 0.95840 0.89558
0.94227 1.20239 0.87948 1.02497 0.98291 1.21181 0.96331 0.97698
1.02494 1.23714 0.79638 1.00717 1.02204 1.83992 1.26283 1.42079
1.57266 1.19628 0.95711 0.88911 0.95351 1.19921 0.95468 0.96905
1.00599 1.20952 0.98213 0.95140 0.96503 1.20815 0.91980 1.01158
1.00909 1.20374 0.99559 0.93460 0.95019 1.19807 0.92308 0.98633
1.02036 1.60789 1.34294 1.33464 1.03748 1.22124 0.99904 0.93239
0.90589 1.20609 0.94148 0.96636 0.94391 1.21587 0.98235 0.97509
0.99870 1.21816 0.96822 0.99674 1.00329 1.19119 0.96869 0.93568
0.90793 1.21235 1.42686 0.96248 0.94100 0.92317 1.25013 0.95926
0.94839 0.98828 1.69974 1.49301 1.08990 1.25546 0.86676 0.78934
0.80077 0.82811 1.20856 1.21394 1.19903 0.92041 0.92357 0.93117
0.90271 0.89954 0.77868 0.85252 0.84806 0.85125 0.84970 0.83298
0.96311 0.91662 0.94030 0.92732 0.94187 0.94521 0.91857 0.94465
0.97057 0.96733 0.93225
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.57 9.42 37.16 0.35 -1.22 16
2 C 0.08 1.07 2.64 -67.71 -0.18 0.89 16
3 H 0.04 0.54 7.80 -51.93 -0.40 0.13 16
4 C -0.05 -0.55 5.36 -27.88 -0.15 -0.70 16
5 C -0.18 -2.10 5.21 -102.66 -0.53 -2.63 16
6 C 0.00 0.02 11.89 29.24 0.35 0.37 16
7 O -0.19 -2.53 10.58 3.89 0.04 -2.48 16
8 C 0.05 0.68 7.42 -38.48 -0.29 0.40 16
9 C -0.11 -1.28 10.07 -39.46 -0.40 -1.68 16
10 C -0.09 -0.95 10.01 -39.54 -0.40 -1.35 16
11 C -0.13 -1.47 9.88 -39.94 -0.39 -1.87 16
12 C -0.07 -0.83 6.91 -39.69 -0.27 -1.10 16
13 C -0.13 -1.69 5.49 -105.16 -0.58 -2.26 16
14 N -0.69 -10.54 5.52 -106.72 -0.59 -11.13 16
15 C 0.07 1.30 4.44 -3.83 -0.02 1.28 16
16 C -0.06 -1.19 0.60 -154.51 -0.09 -1.29 16
17 C -0.11 -2.27 8.06 37.16 0.30 -1.97 16
18 C -0.13 -2.55 7.89 37.16 0.29 -2.25 16
19 C 0.03 0.88 4.04 -27.88 -0.11 0.77 16
20 C -0.50 -14.02 7.65 -34.44 -0.26 -14.29 16
21 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16
22 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16
23 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16
24 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16
25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16
26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
27 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16
28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
29 H 0.06 0.74 7.45 -51.93 -0.39 0.35 16
30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16
31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16
32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16
33 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16
34 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16
35 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16
36 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16
37 H 0.13 1.61 7.57 -52.49 -0.40 1.21 16
38 H 0.34 5.21 2.48 -39.29 -0.10 5.11 16
39 H 0.02 0.37 8.06 -51.93 -0.42 -0.05 16
40 H 0.06 1.22 7.44 -51.93 -0.39 0.84 16
41 H 0.04 0.73 7.60 -51.93 -0.39 0.34 16
42 H 0.05 1.15 6.62 -51.93 -0.34 0.80 16
43 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16
44 H 0.04 0.75 8.14 -51.92 -0.42 0.32 16
45 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16
46 H 0.04 0.63 4.72 -51.93 -0.24 0.38 16
47 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16
48 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16
49 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16
LS Contribution 380.38 15.07 5.73 5.73
Total: -1.00 -31.63 380.38 -9.51 -41.14
By element:
Atomic # 1 Polarization: 11.82 SS G_CDS: -7.92 Total: 3.90 kcal
Atomic # 6 Polarization: -24.97 SS G_CDS: -2.48 Total: -27.45 kcal
Atomic # 7 Polarization: -37.78 SS G_CDS: 0.15 Total: -37.64 kcal
Atomic # 8 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.48 kcal
Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal
Total LS contribution 5.73 Total: 5.73 kcal
Total: -31.63 -9.51 -41.14 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000449330630.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.026 kcal
(2) G-P(sol) polarization free energy of solvation -31.630 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.396 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.135 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.891 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds