Wall clock time and date at job start Tue Mar 31 2020 11:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42903 * 109.46997 * 2 1 4 4 C 1.42896 * 114.00234 * 180.02562 * 3 2 1 5 5 H 1.09006 * 112.95230 * 18.58318 * 4 3 2 6 6 C 1.53954 * 113.66158 * 247.18751 * 4 3 2 7 7 C 1.53947 * 87.29364 * 270.25538 * 6 4 3 8 8 H 1.09010 * 113.74548 * 89.74819 * 7 6 4 9 9 N 1.46902 * 113.66564 * 220.79186 * 7 6 4 10 10 C 1.46900 * 111.00118 * 252.19170 * 9 7 6 11 11 C 1.50702 * 109.47233 * 179.97438 * 10 9 7 12 12 C 1.38635 * 119.74616 * 269.72276 * 11 10 9 13 13 C 1.37615 * 120.24349 * 179.76131 * 12 11 10 14 14 C 1.40712 * 119.74978 * 0.48968 * 13 12 11 15 15 C 1.41397 * 120.24936 * 179.78963 * 14 13 12 16 16 H 1.07995 * 119.99566 * 24.35300 * 15 14 13 17 17 C 1.39937 * 120.00026 * 204.36168 * 15 14 13 18 18 N 1.30823 * 120.00476 * 17.86193 * 17 15 14 19 19 Si 1.86804 * 119.99976 * 197.86316 * 17 15 14 20 20 H 1.48499 * 109.47058 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47232 * 119.99526 * 19 17 15 22 22 H 1.48494 * 109.47407 * 239.99932 * 19 17 15 23 23 C 1.40721 * 119.50828 * 359.76089 * 14 13 12 24 24 C 1.37618 * 119.74409 * 0.02562 * 23 14 13 25 25 C 1.52904 * 86.78472 * 335.26537 * 7 6 4 26 26 C 1.52914 * 121.14198 * 150.61412 * 25 7 6 27 27 C 1.53953 * 86.88342 * 150.57284 * 26 25 7 28 28 C 1.52906 * 121.13898 * 259.17952 * 25 7 6 29 29 H 1.09002 * 109.47345 * 59.99904 * 1 2 3 30 30 H 1.09004 * 109.47069 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47099 * 299.99870 * 1 2 3 32 32 H 1.08998 * 109.47099 * 240.00130 * 2 1 3 33 33 H 1.08996 * 109.47267 * 119.99664 * 2 1 3 34 34 H 1.08999 * 113.58471 * 155.65530 * 6 4 3 35 35 H 1.08998 * 113.64877 * 24.86931 * 6 4 3 36 36 H 1.00892 * 110.99767 * 128.23217 * 9 7 6 37 37 H 1.09011 * 109.46671 * 299.99689 * 10 9 7 38 38 H 1.08994 * 109.47130 * 59.99372 * 10 9 7 39 39 H 1.08001 * 119.87274 * 359.97438 * 12 11 10 40 40 H 1.08009 * 120.12472 * 180.27920 * 13 12 11 41 41 H 0.97002 * 120.00369 * 180.02562 * 18 17 15 42 42 H 1.07996 * 120.12610 * 180.02562 * 23 14 13 43 43 H 1.08003 * 119.87445 * 179.97438 * 24 23 14 44 44 H 1.08997 * 113.66233 * 265.09628 * 26 25 7 45 45 H 1.09002 * 113.65750 * 36.05542 * 26 25 7 46 46 H 1.08996 * 113.57635 * 89.92305 * 27 26 25 47 47 H 1.08999 * 113.57458 * 220.71154 * 27 26 25 48 48 H 1.09003 * 113.65829 * 323.85493 * 28 25 7 49 49 H 1.09001 * 113.65917 * 94.81016 * 28 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9296 0.5454 -0.3208 6 6 4.0041 2.0539 1.2991 7 6 3.8584 3.4395 0.6443 8 1 2.8924 3.9112 0.8252 9 7 4.9908 4.3378 0.9069 10 6 4.6115 5.4027 1.8449 11 6 5.7959 6.3017 2.0899 12 6 6.6692 6.0210 3.1294 13 6 7.7568 6.8322 3.3593 14 6 7.9750 7.9560 2.5410 15 6 9.0866 8.7992 2.7705 16 1 9.9614 8.4144 3.2734 17 6 9.0530 10.1322 2.3462 18 7 7.9089 10.7001 2.0632 19 14 10.6419 11.1010 2.1839 20 1 11.7892 10.2371 2.5614 21 1 10.8041 11.5541 0.7789 22 1 10.5956 12.2822 3.0827 23 6 7.0791 8.2341 1.4921 24 6 6.0006 7.4065 1.2779 25 6 3.9466 2.7179 -0.7008 26 6 3.2494 3.2731 -1.9434 27 6 4.3670 2.6060 -2.7656 28 6 5.2477 2.6984 -1.5039 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.0386 1.7684 1.4898 35 1 3.3594 1.9115 2.1664 36 1 5.3524 4.7243 0.0479 37 1 3.7937 5.9859 1.4211 38 1 4.2911 4.9594 2.7877 39 1 6.4971 5.1605 3.7589 40 1 8.4384 6.6091 4.1669 41 1 7.8857 11.6240 1.7687 42 1 7.2372 9.0936 0.8577 43 1 5.3114 7.6182 0.4737 44 1 2.2623 2.8456 -2.1189 45 1 3.2558 4.3617 -1.9988 46 1 4.1377 1.5829 -3.0633 47 1 4.7239 3.2184 -3.5936 48 1 5.8171 3.6254 -1.4366 49 1 5.8576 1.8125 -1.3272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451480377.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:40 Heat of formation + Delta-G solvation = 8.836545 kcal Electronic energy + Delta-G solvation = -25884.653528 eV Core-core repulsion = 22391.261562 eV Total energy + Delta-G solvation = -3493.391966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.83510 -37.71107 -37.39919 -35.39575 -33.95522 -32.82199 -31.00176 -29.67747 -29.18411 -26.40718 -25.83239 -24.65170 -23.82009 -23.03286 -22.46041 -20.94568 -20.76440 -19.80498 -18.24991 -17.25859 -16.75333 -16.22275 -15.81625 -15.48506 -15.24194 -14.88172 -14.42927 -14.17114 -13.82794 -13.45258 -13.26883 -13.13260 -12.95237 -12.64568 -12.45807 -12.23863 -12.01969 -11.90517 -11.87402 -11.73112 -11.60333 -11.47255 -11.32753 -11.08078 -10.94763 -10.90837 -10.56481 -10.45919 -10.25484 -10.11862 -9.91521 -9.49232 -9.39224 -9.34789 -9.09818 -7.97866 -7.40715 -7.25357 -6.73845 -4.31679 2.76197 3.08204 3.12448 3.13948 3.20182 3.30474 3.94922 4.37875 4.41751 4.52707 4.65035 4.70655 4.79146 4.82613 4.89998 4.95017 5.02638 5.09382 5.17503 5.36564 5.43713 5.58888 5.62489 5.65429 5.74649 5.76592 5.81679 5.86413 5.90880 5.95768 5.97483 6.01176 6.05195 6.24621 6.32315 6.38491 6.42585 6.46606 6.51656 6.98206 7.10691 7.12300 7.31870 7.42088 7.54213 7.65660 7.81960 7.94431 8.09438 8.19294 8.34367 8.67798 8.93196 9.01763 10.20749 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.026807 B = 0.002388 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.249088 B =11720.967316 C =12147.568997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.363 6.363 4 C 0.089 3.911 5 H 0.072 0.928 6 C -0.140 4.140 7 C 0.079 3.921 8 H 0.072 0.928 9 N -0.669 5.669 10 C 0.124 3.876 11 C -0.211 4.211 12 C -0.069 4.069 13 C -0.228 4.228 14 C 0.111 3.889 15 C -0.463 4.463 16 H 0.077 0.923 17 C 0.075 3.925 18 N -0.794 5.794 19 Si 0.906 3.094 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.275 1.275 23 C -0.166 4.166 24 C -0.096 4.096 25 C -0.106 4.106 26 C -0.124 4.124 27 C -0.142 4.142 28 C -0.104 4.104 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.339 0.661 37 H 0.018 0.982 38 H 0.060 0.940 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.279 0.721 42 H 0.116 0.884 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.093 0.907 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.283 -16.819 -7.425 21.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.282 6.282 4 C 0.030 3.970 5 H 0.090 0.910 6 C -0.179 4.179 7 C -0.031 4.031 8 H 0.090 0.910 9 N -0.301 5.301 10 C -0.004 4.004 11 C -0.213 4.213 12 C -0.088 4.088 13 C -0.248 4.248 14 C 0.109 3.891 15 C -0.492 4.492 16 H 0.095 0.905 17 C -0.142 4.142 18 N -0.420 5.420 19 Si 0.731 3.269 20 H -0.184 1.184 21 H -0.197 1.197 22 H -0.201 1.201 23 C -0.185 4.185 24 C -0.115 4.115 25 C -0.107 4.107 26 C -0.162 4.162 27 C -0.180 4.180 28 C -0.141 4.141 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.159 0.841 37 H 0.036 0.964 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.090 0.910 42 H 0.134 0.866 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.098 0.902 46 H 0.093 0.907 47 H 0.085 0.915 48 H 0.111 0.889 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.250 -16.817 -6.997 20.901 hybrid contribution 0.215 0.925 -0.539 1.092 sum -10.035 -15.892 -7.535 20.249 Atomic orbital electron populations 1.21740 0.93818 1.02107 1.03170 1.22502 0.95462 0.84041 0.99924 1.87878 1.19833 1.25954 1.94556 1.22645 0.81145 0.96353 0.96866 0.90999 1.23545 1.01519 0.96377 0.96460 1.22713 0.93610 0.92864 0.93920 0.91048 1.60793 1.30949 1.21319 1.17060 1.20599 0.94486 0.90095 0.95220 1.18908 1.00518 0.99297 1.02535 1.20328 0.94748 0.97188 0.96502 1.20973 1.00346 1.00932 1.02540 1.17628 0.91738 0.90612 0.89134 1.19620 1.01523 0.94468 1.33630 0.90479 1.25908 0.97293 0.98288 0.92700 1.69841 1.26113 1.13168 1.32841 0.86300 0.82510 0.79427 0.78706 1.18405 1.19740 1.20061 1.21272 0.96850 1.00657 0.99760 1.20520 0.97675 0.95257 0.98035 1.22991 0.97898 0.96298 0.93535 1.22633 0.98287 1.00182 0.95063 1.22894 0.97415 1.00702 0.96954 1.22552 0.94628 1.02958 0.94003 0.91912 0.91220 0.91805 0.93564 0.93402 0.88584 0.91459 0.84080 0.96391 0.92152 0.89516 0.89164 0.91014 0.86594 0.90005 0.91064 0.90219 0.90702 0.91455 0.88852 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.16 0.38 -0.70 16 2 C 0.06 0.49 6.50 37.16 0.24 0.73 16 3 O -0.36 -4.15 9.84 -35.23 -0.35 -4.50 16 4 C 0.09 0.98 4.17 -26.28 -0.11 0.87 16 5 H 0.07 0.70 7.87 -51.93 -0.41 0.29 16 6 C -0.14 -1.74 7.72 -25.75 -0.20 -1.94 16 7 C 0.08 1.08 3.98 -67.27 -0.27 0.82 16 8 H 0.07 1.06 7.87 -51.92 -0.41 0.65 16 9 N -0.67 -10.65 6.32 -107.51 -0.68 -11.33 16 10 C 0.12 2.24 5.65 -4.97 -0.03 2.21 16 11 C -0.21 -4.60 5.42 -104.33 -0.56 -5.17 16 12 C -0.07 -1.57 9.67 -39.66 -0.38 -1.96 16 13 C -0.23 -5.71 9.80 -38.88 -0.38 -6.09 16 14 C 0.11 3.01 5.58 -106.82 -0.60 2.41 16 15 C -0.46 -12.43 9.05 -37.74 -0.34 -12.78 16 16 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 17 C 0.08 1.92 5.14 -17.35 -0.09 1.83 16 18 N -0.79 -20.73 10.95 55.55 0.61 -20.12 16 19 Si 0.91 18.82 29.60 -169.99 -5.03 13.79 16 20 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 23 C -0.17 -4.34 8.70 -38.87 -0.34 -4.68 16 24 C -0.10 -2.24 9.67 -39.66 -0.38 -2.62 16 25 C -0.11 -1.23 0.92 -154.71 -0.14 -1.38 16 26 C -0.12 -1.37 7.71 -26.28 -0.20 -1.57 16 27 C -0.14 -1.39 8.10 -25.64 -0.21 -1.60 16 28 C -0.10 -1.14 7.38 -26.18 -0.19 -1.33 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.34 5.43 6.87 -39.30 -0.27 5.16 16 37 H 0.02 0.32 8.07 -51.92 -0.42 -0.10 16 38 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 39 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 41 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 42 H 0.12 3.14 6.16 -52.49 -0.32 2.81 16 43 H 0.08 1.74 8.06 -52.48 -0.42 1.31 16 44 H 0.07 0.80 7.83 -51.93 -0.41 0.39 16 45 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.09 1.11 6.67 -51.93 -0.35 0.77 16 49 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 392.77 15.07 5.92 5.92 Total: -1.00 -27.45 392.77 -11.80 -39.25 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -8.47 Total: 9.94 kcal Atomic # 6 Polarization: -29.14 SS G_CDS: -3.80 Total: -32.95 kcal Atomic # 7 Polarization: -31.38 SS G_CDS: -0.07 Total: -31.45 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: -0.35 Total: -4.50 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -27.45 -11.80 -39.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451480377.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.084 kcal (2) G-P(sol) polarization free energy of solvation -27.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds