Wall clock time and date at job start Tue Mar 31 2020 11:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42903 * 109.46997 * 2 1 4 4 C 1.42896 * 114.00234 * 180.02562 * 3 2 1 5 5 H 1.09006 * 112.95230 * 18.58318 * 4 3 2 6 6 C 1.53954 * 113.66158 * 247.18751 * 4 3 2 7 7 C 1.53947 * 87.29364 * 270.25538 * 6 4 3 8 8 H 1.09010 * 113.74548 * 89.74819 * 7 6 4 9 9 N 1.46902 * 113.66564 * 220.79186 * 7 6 4 10 10 C 1.46900 * 111.00118 * 252.19170 * 9 7 6 11 11 C 1.50702 * 109.47233 * 179.97438 * 10 9 7 12 12 C 1.38635 * 119.74616 * 269.72276 * 11 10 9 13 13 C 1.37615 * 120.24349 * 179.76131 * 12 11 10 14 14 C 1.40712 * 119.74978 * 0.48968 * 13 12 11 15 15 C 1.41397 * 120.24936 * 179.78963 * 14 13 12 16 16 H 1.07995 * 119.99566 * 24.35300 * 15 14 13 17 17 C 1.39937 * 120.00026 * 204.36168 * 15 14 13 18 18 N 1.30823 * 120.00476 * 17.86193 * 17 15 14 19 19 Si 1.86804 * 119.99976 * 197.86316 * 17 15 14 20 20 H 1.48499 * 109.47058 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47232 * 119.99526 * 19 17 15 22 22 H 1.48494 * 109.47407 * 239.99932 * 19 17 15 23 23 C 1.40721 * 119.50828 * 359.76089 * 14 13 12 24 24 C 1.37618 * 119.74409 * 0.02562 * 23 14 13 25 25 C 1.52904 * 86.78472 * 335.26537 * 7 6 4 26 26 C 1.52914 * 121.14198 * 150.61412 * 25 7 6 27 27 C 1.53953 * 86.88342 * 150.57284 * 26 25 7 28 28 C 1.52906 * 121.13898 * 259.17952 * 25 7 6 29 29 H 1.09002 * 109.47345 * 59.99904 * 1 2 3 30 30 H 1.09004 * 109.47069 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47099 * 299.99870 * 1 2 3 32 32 H 1.08998 * 109.47099 * 240.00130 * 2 1 3 33 33 H 1.08996 * 109.47267 * 119.99664 * 2 1 3 34 34 H 1.08999 * 113.58471 * 155.65530 * 6 4 3 35 35 H 1.08998 * 113.64877 * 24.86931 * 6 4 3 36 36 H 1.00892 * 110.99767 * 128.23217 * 9 7 6 37 37 H 1.09011 * 109.46671 * 299.99689 * 10 9 7 38 38 H 1.08994 * 109.47130 * 59.99372 * 10 9 7 39 39 H 1.08001 * 119.87274 * 359.97438 * 12 11 10 40 40 H 1.08009 * 120.12472 * 180.27920 * 13 12 11 41 41 H 0.97002 * 120.00369 * 180.02562 * 18 17 15 42 42 H 1.07996 * 120.12610 * 180.02562 * 23 14 13 43 43 H 1.08003 * 119.87445 * 179.97438 * 24 23 14 44 44 H 1.08997 * 113.66233 * 265.09628 * 26 25 7 45 45 H 1.09002 * 113.65750 * 36.05542 * 26 25 7 46 46 H 1.08996 * 113.57635 * 89.92305 * 27 26 25 47 47 H 1.08999 * 113.57458 * 220.71154 * 27 26 25 48 48 H 1.09003 * 113.65829 * 323.85493 * 28 25 7 49 49 H 1.09001 * 113.65917 * 94.81016 * 28 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9296 0.5454 -0.3208 6 6 4.0041 2.0539 1.2991 7 6 3.8584 3.4395 0.6443 8 1 2.8924 3.9112 0.8252 9 7 4.9908 4.3378 0.9069 10 6 4.6115 5.4027 1.8449 11 6 5.7959 6.3017 2.0899 12 6 6.6692 6.0210 3.1294 13 6 7.7568 6.8322 3.3593 14 6 7.9750 7.9560 2.5410 15 6 9.0866 8.7992 2.7705 16 1 9.9614 8.4144 3.2734 17 6 9.0530 10.1322 2.3462 18 7 7.9089 10.7001 2.0632 19 14 10.6419 11.1010 2.1839 20 1 11.7892 10.2371 2.5614 21 1 10.8041 11.5541 0.7789 22 1 10.5956 12.2822 3.0827 23 6 7.0791 8.2341 1.4921 24 6 6.0006 7.4065 1.2779 25 6 3.9466 2.7179 -0.7008 26 6 3.2494 3.2731 -1.9434 27 6 4.3670 2.6060 -2.7656 28 6 5.2477 2.6984 -1.5039 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.0386 1.7684 1.4898 35 1 3.3594 1.9115 2.1664 36 1 5.3524 4.7243 0.0479 37 1 3.7937 5.9859 1.4211 38 1 4.2911 4.9594 2.7877 39 1 6.4971 5.1605 3.7589 40 1 8.4384 6.6091 4.1669 41 1 7.8857 11.6240 1.7687 42 1 7.2372 9.0936 0.8577 43 1 5.3114 7.6182 0.4737 44 1 2.2623 2.8456 -2.1189 45 1 3.2558 4.3617 -1.9988 46 1 4.1377 1.5829 -3.0633 47 1 4.7239 3.2184 -3.5936 48 1 5.8171 3.6254 -1.4366 49 1 5.8576 1.8125 -1.3272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451480377.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:38 Heat of formation + Delta-G solvation = -3.967775 kcal Electronic energy + Delta-G solvation = -25885.208765 eV Core-core repulsion = 22391.261562 eV Total energy + Delta-G solvation = -3493.947203 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.76681 -39.51702 -38.23919 -36.70222 -35.52757 -34.15886 -31.95522 -31.25889 -31.03838 -28.09555 -26.70447 -25.66288 -25.17078 -23.78009 -23.65145 -22.86515 -21.71810 -21.58500 -19.21038 -19.15161 -17.77137 -17.27378 -17.00505 -16.62720 -16.31520 -16.04413 -15.84479 -15.63196 -15.51405 -15.01094 -14.44844 -14.19100 -13.95246 -13.80220 -13.76864 -13.47765 -13.42643 -13.18526 -13.03137 -12.90001 -12.77910 -12.71192 -12.53870 -12.37395 -12.35785 -12.19755 -11.96841 -11.82602 -11.44703 -11.27294 -11.18205 -11.00150 -10.99760 -10.80163 -10.25814 -9.39950 -9.26139 -9.12885 -8.63231 -6.32032 0.95005 1.17220 1.37856 1.49852 1.53450 2.21162 2.53081 2.70414 3.38450 3.47928 3.60900 3.78576 3.85139 3.90241 3.93330 4.02163 4.21463 4.23095 4.31093 4.36050 4.42796 4.52175 4.53252 4.56373 4.64117 4.67352 4.78784 4.82487 4.84672 4.89120 4.99791 5.05286 5.05799 5.09198 5.10344 5.12413 5.17640 5.25823 5.28703 5.38900 5.46045 5.49237 5.59808 5.72774 5.97663 6.11995 6.23288 6.28581 6.37317 6.41297 6.55074 6.71990 6.95838 7.05770 8.33994 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.026807 B = 0.002388 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.249088 B =11720.967316 C =12147.568997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 O -0.382 6.382 4 C 0.098 3.902 5 H 0.091 0.909 6 C -0.138 4.138 7 C 0.072 3.928 8 H 0.060 0.940 9 N -0.669 5.669 10 C 0.132 3.868 11 C -0.197 4.197 12 C -0.072 4.072 13 C -0.244 4.244 14 C 0.079 3.921 15 C -0.501 4.501 16 H 0.073 0.927 17 C 0.034 3.966 18 N -0.827 5.827 19 Si 0.982 3.018 20 H -0.259 1.259 21 H -0.264 1.264 22 H -0.266 1.266 23 C -0.189 4.189 24 C -0.098 4.098 25 C -0.105 4.105 26 C -0.126 4.126 27 C -0.130 4.130 28 C -0.105 4.105 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.338 0.662 37 H 0.022 0.978 38 H 0.067 0.933 39 H 0.111 0.889 40 H 0.094 0.906 41 H 0.287 0.713 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.072 0.928 48 H 0.080 0.920 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.715 -18.515 -8.271 22.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.026 4.026 3 O -0.302 6.302 4 C 0.040 3.960 5 H 0.108 0.892 6 C -0.177 4.177 7 C -0.038 4.038 8 H 0.078 0.922 9 N -0.301 5.301 10 C 0.004 3.996 11 C -0.199 4.199 12 C -0.090 4.090 13 C -0.264 4.264 14 C 0.076 3.924 15 C -0.531 4.531 16 H 0.091 0.909 17 C -0.181 4.181 18 N -0.453 5.453 19 Si 0.803 3.197 20 H -0.182 1.182 21 H -0.188 1.188 22 H -0.191 1.191 23 C -0.208 4.208 24 C -0.117 4.117 25 C -0.105 4.105 26 C -0.163 4.163 27 C -0.168 4.168 28 C -0.143 4.143 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.158 0.842 37 H 0.040 0.960 38 H 0.085 0.915 39 H 0.129 0.871 40 H 0.112 0.888 41 H 0.098 0.902 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.107 0.893 47 H 0.091 0.909 48 H 0.099 0.901 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.703 -18.537 -7.841 22.796 hybrid contribution 0.195 1.336 -0.260 1.374 sum -10.508 -17.201 -8.100 21.724 Atomic orbital electron populations 1.21758 0.93053 1.03321 1.02508 1.22723 0.96145 0.82872 1.00867 1.87864 1.19843 1.27903 1.94556 1.22538 0.81348 0.96678 0.95469 0.89153 1.23515 1.01524 0.95509 0.97143 1.22779 0.92087 0.92769 0.96131 0.92244 1.60742 1.32039 1.20514 1.16777 1.20474 0.92699 0.90165 0.96289 1.19291 1.00815 0.98788 1.00957 1.20619 0.94021 0.97463 0.96943 1.21171 1.01419 1.01078 1.02692 1.17972 0.92566 0.91758 0.90059 1.19844 1.01809 0.95755 1.35673 0.90866 1.26766 1.00813 0.98773 0.91717 1.69888 1.28156 1.13929 1.33318 0.85165 0.77730 0.77782 0.79046 1.18220 1.18814 1.19059 1.21240 0.98321 1.01175 1.00105 1.20748 0.97096 0.95164 0.98699 1.23021 0.98602 0.96258 0.92663 1.22620 0.98681 0.99773 0.95258 1.22856 0.96019 1.01432 0.96461 1.22543 0.94434 1.02723 0.94588 0.92346 0.89093 0.92673 0.92255 0.92750 0.88744 0.91728 0.84230 0.95983 0.91492 0.87090 0.88766 0.90216 0.88294 0.88102 0.91192 0.91087 0.89291 0.90883 0.90121 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 10.28 71.98 0.74 -1.11 16 2 C 0.05 0.73 6.50 71.98 0.47 1.20 16 3 O -0.38 -8.01 9.84 -148.98 -1.47 -9.47 16 4 C 0.10 1.96 4.17 30.89 0.13 2.08 16 5 H 0.09 1.48 7.87 -2.38 -0.02 1.46 16 6 C -0.14 -3.20 7.72 31.23 0.24 -2.96 16 7 C 0.07 1.88 3.98 45.20 0.18 2.06 16 8 H 0.06 1.71 7.87 -2.38 -0.02 1.69 16 9 N -0.67 -20.47 6.32 -494.06 -3.12 -23.59 16 10 C 0.13 4.60 5.65 85.56 0.48 5.08 16 11 C -0.20 -8.46 5.42 -19.68 -0.11 -8.57 16 12 C -0.07 -3.25 9.67 22.22 0.21 -3.03 16 13 C -0.24 -12.44 9.80 22.73 0.22 -12.21 16 14 C 0.08 4.39 5.58 -21.29 -0.12 4.27 16 15 C -0.50 -27.89 9.05 23.46 0.21 -27.67 16 16 H 0.07 3.95 7.91 -2.91 -0.02 3.93 16 17 C 0.03 1.75 5.14 85.25 0.44 2.18 16 18 N -0.83 -44.28 10.95 21.82 0.24 -44.04 16 19 Si 0.98 39.07 29.60 68.60 2.03 41.10 16 20 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 21 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 22 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 23 C -0.19 -10.19 8.70 22.73 0.20 -9.99 16 24 C -0.10 -4.61 9.67 22.22 0.21 -4.39 16 25 C -0.10 -2.25 0.92 -52.31 -0.05 -2.30 16 26 C -0.13 -2.59 7.71 30.89 0.24 -2.35 16 27 C -0.13 -2.24 8.10 31.30 0.25 -1.99 16 28 C -0.11 -2.11 7.38 30.95 0.23 -1.88 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.71 16 34 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.34 10.50 6.87 -89.70 -0.62 9.89 16 37 H 0.02 0.76 8.07 -2.38 -0.02 0.74 16 38 H 0.07 2.26 8.08 -2.39 -0.02 2.24 16 39 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 40 H 0.09 4.58 8.06 -2.91 -0.02 4.55 16 41 H 0.29 13.84 8.30 -92.71 -0.77 13.07 16 42 H 0.10 5.59 6.16 -2.91 -0.02 5.57 16 43 H 0.10 4.25 8.06 -2.91 -0.02 4.23 16 44 H 0.07 1.46 7.83 -2.39 -0.02 1.44 16 45 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.08 1.83 6.67 -2.39 -0.02 1.82 16 49 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -60.07 392.77 2.17 -57.90 By element: Atomic # 1 Polarization: 39.36 SS G_CDS: 0.30 Total: 39.66 kcal Atomic # 6 Polarization: -65.76 SS G_CDS: 4.19 Total: -61.57 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: -2.88 Total: -67.63 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -1.47 Total: -9.47 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -60.07 2.17 -57.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451480377.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.934 kcal (2) G-P(sol) polarization free energy of solvation -60.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds