Wall clock time and date at job start Tue Mar 31 2020 11:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99770 * 2 1 4 4 H 1.08997 * 112.88648 * 341.35051 * 3 2 1 5 5 C 1.53958 * 113.65762 * 112.81316 * 3 2 1 6 6 C 1.53958 * 87.29230 * 139.20441 * 5 3 2 7 7 H 1.08999 * 113.66267 * 89.74156 * 6 5 3 8 8 N 1.46897 * 113.65895 * 220.79434 * 6 5 3 9 9 C 1.46905 * 110.99990 * 171.54401 * 8 6 5 10 10 C 1.46899 * 111.00461 * 295.49328 * 8 6 5 11 11 C 1.50696 * 109.47609 * 170.00192 * 10 8 6 12 12 C 1.38636 * 119.74871 * 269.73230 * 11 10 8 13 13 C 1.37617 * 120.24810 * 179.71819 * 12 11 10 14 14 C 1.40723 * 119.74340 * 0.57087 * 13 12 11 15 15 C 1.41390 * 120.24209 * 179.67959 * 14 13 12 16 16 H 1.07997 * 120.00536 * 25.52130 * 15 14 13 17 17 C 1.39950 * 119.99481 * 205.51548 * 15 14 13 18 18 N 1.30818 * 120.00179 * 13.39443 * 17 15 14 19 19 Si 1.86808 * 119.99823 * 193.38971 * 17 15 14 20 20 H 1.48493 * 109.47079 * 90.00062 * 19 17 15 21 21 H 1.48499 * 109.47016 * 210.00525 * 19 17 15 22 22 H 1.48500 * 109.47009 * 330.00342 * 19 17 15 23 23 C 1.40719 * 119.50891 * 359.70287 * 14 13 12 24 24 C 1.37614 * 119.74533 * 359.97438 * 23 14 13 25 25 C 1.52906 * 86.78100 * 335.26410 * 6 5 3 26 26 C 1.52908 * 121.13816 * 259.17966 * 25 6 5 27 27 C 1.53957 * 86.88314 * 209.43687 * 26 25 6 28 28 C 1.53106 * 121.19780 * 150.66269 * 25 6 5 29 29 H 1.09007 * 109.46971 * 59.99728 * 1 2 3 30 30 H 1.08993 * 109.46937 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46927 * 300.00333 * 1 2 3 32 32 H 1.08995 * 113.57974 * 253.80015 * 5 3 2 33 33 H 1.08994 * 113.58067 * 24.52508 * 5 3 2 34 34 H 1.09000 * 109.47143 * 55.18287 * 9 8 6 35 35 H 1.08996 * 109.47284 * 175.19040 * 9 8 6 36 36 H 1.09002 * 109.46693 * 295.18614 * 9 8 6 37 37 H 1.09000 * 109.47241 * 290.00668 * 10 8 6 38 38 H 1.09001 * 109.47036 * 49.99961 * 10 8 6 39 39 H 1.08001 * 119.87691 * 359.97403 * 12 11 10 40 40 H 1.07997 * 120.13425 * 180.27688 * 13 12 11 41 41 H 0.97004 * 119.99935 * 179.97438 * 18 17 15 42 42 H 1.07998 * 120.12246 * 180.02562 * 23 14 13 43 43 H 1.08000 * 119.87447 * 179.97438 * 24 23 14 44 44 H 1.08992 * 113.66662 * 94.91777 * 26 25 6 45 45 H 1.08998 * 113.66006 * 323.94817 * 26 25 6 46 46 H 1.08995 * 113.58025 * 139.29269 * 27 26 25 47 47 H 1.09002 * 113.57335 * 270.07929 * 27 26 25 48 48 H 1.08997 * 113.58120 * 36.03958 * 28 25 6 49 49 H 1.09005 * 113.80307 * 265.01993 * 28 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3134 2.0797 -0.3211 5 6 2.7610 1.6475 1.2999 6 6 3.8399 2.3026 0.4183 7 1 3.6579 3.3580 0.2158 8 7 5.2121 2.0340 0.8685 9 6 6.1922 2.5114 -0.1161 10 6 5.4592 2.6294 2.1885 11 6 6.7772 2.1331 2.7248 12 6 6.8161 0.9828 3.4976 13 6 8.0147 0.5172 3.9878 14 6 9.2022 1.2201 3.7119 15 6 10.4386 0.7549 4.2159 16 1 10.5698 -0.2929 4.4421 17 6 11.4925 1.6524 4.4215 18 7 11.2675 2.9410 4.4025 19 14 13.2207 1.0104 4.7232 20 1 13.9276 0.8634 3.4257 21 1 13.9608 1.9671 5.5847 22 1 13.1472 -0.3098 5.3992 23 6 9.1498 2.3897 2.9312 24 6 7.9408 2.8331 2.4459 25 6 3.3679 1.3728 -0.7002 26 6 4.1411 0.1008 -1.0500 27 6 3.6213 0.2810 -2.4879 28 6 3.4809 1.7810 -2.1715 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.2300 2.3548 1.9369 33 1 3.1134 0.7709 1.8434 34 1 6.0185 3.5683 -0.3186 35 1 7.1991 2.3779 0.2793 36 1 6.0861 1.9423 -1.0397 37 1 5.4897 3.7152 2.0974 38 1 4.6587 2.3445 2.8712 39 1 5.9028 0.4478 3.7123 40 1 8.0435 -0.3816 4.5859 41 1 11.9980 3.5631 4.5454 42 1 10.0551 2.9367 2.7130 43 1 7.8982 3.7307 1.8468 44 1 3.7599 -0.7927 -0.5558 45 1 5.2221 0.2070 -0.9591 46 1 4.3680 0.0645 -3.2518 47 1 2.6693 -0.2167 -2.6729 48 1 4.3761 2.3611 -2.3956 49 1 2.5730 2.2300 -2.5744 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451845682.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:22 Heat of formation + Delta-G solvation = 23.144711 kcal Electronic energy + Delta-G solvation = -26677.130706 eV Core-core repulsion = 23184.359189 eV Total energy + Delta-G solvation = -3492.771517 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -40.85791 -37.90725 -37.07078 -35.96340 -33.93459 -33.12133 -30.16001 -29.26535 -27.18580 -27.10128 -25.72387 -25.33358 -24.56301 -23.55110 -21.91010 -20.92215 -20.48606 -19.58051 -18.17506 -17.24905 -16.78785 -15.94320 -15.78773 -15.33328 -15.18406 -14.69106 -14.42078 -14.32703 -13.92462 -13.83304 -13.30932 -13.04495 -12.69917 -12.43853 -12.22576 -12.07013 -11.96062 -11.92463 -11.73566 -11.55990 -11.45577 -11.26037 -11.10913 -11.08139 -10.92781 -10.88097 -10.51978 -10.36757 -10.18030 -10.10090 -9.84906 -9.48617 -9.36429 -9.29697 -9.12333 -7.89855 -7.37236 -7.21083 -6.68474 -4.31636 2.77167 3.08786 3.12770 3.13692 3.20575 3.61789 3.96309 4.34001 4.50261 4.50924 4.62541 4.76557 4.81052 4.82446 4.94729 5.08993 5.20153 5.29928 5.45521 5.48472 5.49329 5.64877 5.66766 5.73692 5.77432 5.84009 5.91585 5.91598 5.93232 6.06283 6.09159 6.24591 6.33932 6.36894 6.42925 6.45149 6.48359 6.52201 6.64610 6.99414 7.12317 7.15820 7.31663 7.43700 7.52240 7.57430 7.67593 7.94720 8.11138 8.20322 8.36023 8.69824 8.95228 9.03129 10.24549 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.025315 B = 0.002736 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.798142 B =10231.341149 C =10427.791579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.085 3.915 4 H 0.084 0.916 5 C -0.139 4.139 6 C 0.067 3.933 7 H 0.059 0.941 8 N -0.513 5.513 9 C 0.022 3.978 10 C 0.120 3.880 11 C -0.202 4.202 12 C -0.071 4.071 13 C -0.226 4.226 14 C 0.110 3.890 15 C -0.462 4.462 16 H 0.076 0.924 17 C 0.074 3.926 18 N -0.800 5.800 19 Si 0.909 3.091 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.263 1.263 23 C -0.163 4.163 24 C -0.097 4.097 25 C -0.086 4.086 26 C -0.092 4.092 27 C -0.140 4.140 28 C -0.130 4.130 29 H 0.037 0.963 30 H 0.083 0.917 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.013 0.987 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.021 0.979 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.278 0.722 42 H 0.120 0.880 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.093 0.907 46 H 0.062 0.938 47 H 0.075 0.925 48 H 0.082 0.918 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.120 -0.240 -10.429 19.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.286 6.286 3 C 0.027 3.973 4 H 0.102 0.898 5 C -0.177 4.177 6 C -0.042 4.042 7 H 0.076 0.924 8 N -0.236 5.236 9 C -0.126 4.126 10 C -0.007 4.007 11 C -0.203 4.203 12 C -0.089 4.089 13 C -0.245 4.245 14 C 0.108 3.892 15 C -0.492 4.492 16 H 0.094 0.906 17 C -0.143 4.143 18 N -0.426 5.426 19 Si 0.734 3.266 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.187 1.187 23 C -0.183 4.183 24 C -0.116 4.116 25 C -0.087 4.087 26 C -0.130 4.130 27 C -0.178 4.178 28 C -0.167 4.167 29 H 0.056 0.944 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.119 0.881 34 H 0.032 0.968 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.039 0.961 38 H 0.082 0.918 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.089 0.911 42 H 0.138 0.862 43 H 0.100 0.900 44 H 0.090 0.910 45 H 0.111 0.889 46 H 0.081 0.919 47 H 0.094 0.906 48 H 0.100 0.900 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.839 -0.682 -10.336 18.925 hybrid contribution 0.463 1.072 0.154 1.177 sum -15.376 0.390 -10.182 18.446 Atomic orbital electron populations 1.22762 0.81798 1.02511 0.99605 1.87980 1.18911 1.27164 1.94508 1.23272 0.92538 0.84931 0.96585 0.89833 1.23475 0.96260 1.01514 0.96488 1.22630 0.89684 0.95969 0.95933 0.92354 1.62230 1.00186 1.58605 1.02621 1.22465 0.98041 0.96475 0.95625 1.20713 0.96330 0.94716 0.88901 1.18846 0.92891 1.00243 1.08360 1.20308 0.96140 0.95106 0.97379 1.20985 0.92636 1.03200 1.07706 1.17630 0.92007 0.91100 0.88504 1.19606 0.95815 0.95612 1.38149 0.90611 1.25896 1.01010 0.94479 0.92909 1.69807 1.33702 1.02580 1.36525 0.86302 0.81548 0.79732 0.79045 1.19370 1.20382 1.18685 1.21371 0.96482 0.99825 1.00591 1.20525 0.93211 0.97935 0.99896 1.22821 0.94752 0.98242 0.92897 1.22340 1.00206 0.96136 0.94269 1.22834 1.01106 0.96042 0.97788 1.22847 1.01510 0.96970 0.95405 0.94403 0.89877 0.94209 0.91729 0.88104 0.96807 0.89847 0.92145 0.96122 0.91753 0.89572 0.89200 0.91063 0.86208 0.89993 0.91021 0.88877 0.91946 0.90602 0.89959 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.85 101.05 1.10 1.35 16 2 O -0.37 -4.34 9.90 -35.23 -0.35 -4.69 16 3 C 0.09 0.95 4.19 -26.28 -0.11 0.84 16 4 H 0.08 0.79 7.87 -51.93 -0.41 0.39 16 5 C -0.14 -1.73 6.58 -25.74 -0.17 -1.90 16 6 C 0.07 0.88 3.05 -67.26 -0.21 0.67 16 7 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 8 N -0.51 -8.11 4.08 -235.79 -0.96 -9.08 16 9 C 0.02 0.34 8.90 60.07 0.53 0.87 16 10 C 0.12 2.11 5.03 -4.98 -0.03 2.09 16 11 C -0.20 -4.33 4.93 -104.33 -0.51 -4.85 16 12 C -0.07 -1.59 9.67 -39.66 -0.38 -1.98 16 13 C -0.23 -5.61 9.80 -38.87 -0.38 -5.99 16 14 C 0.11 2.95 5.58 -106.82 -0.60 2.36 16 15 C -0.46 -12.39 9.07 -37.74 -0.34 -12.74 16 16 H 0.08 1.97 7.88 -52.49 -0.41 1.55 16 17 C 0.07 1.87 5.23 -17.34 -0.09 1.78 16 18 N -0.80 -20.86 10.77 55.55 0.60 -20.26 16 19 Si 0.91 18.93 29.58 -169.99 -5.03 13.90 16 20 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 21 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 23 C -0.16 -4.24 8.69 -38.87 -0.34 -4.57 16 24 C -0.10 -2.22 7.82 -39.66 -0.31 -2.53 16 25 C -0.09 -1.03 0.76 -154.61 -0.12 -1.15 16 26 C -0.09 -1.19 6.88 -26.28 -0.18 -1.37 16 27 C -0.14 -1.52 8.09 -25.74 -0.21 -1.72 16 28 C -0.13 -1.37 7.71 -26.18 -0.20 -1.58 16 29 H 0.04 0.27 8.14 -51.92 -0.42 -0.15 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.01 0.20 8.13 -51.93 -0.42 -0.23 16 35 H 0.08 1.50 5.55 -51.93 -0.29 1.21 16 36 H 0.06 0.85 5.57 -51.93 -0.29 0.56 16 37 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 38 H 0.06 1.09 7.11 -51.93 -0.37 0.72 16 39 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 41 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 42 H 0.12 3.23 6.07 -52.49 -0.32 2.91 16 43 H 0.08 1.73 7.89 -52.49 -0.41 1.31 16 44 H 0.07 1.01 7.65 -51.93 -0.40 0.61 16 45 H 0.09 1.33 6.13 -51.93 -0.32 1.02 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.08 0.88 7.50 -51.93 -0.39 0.49 16 49 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 381.56 15.07 5.75 5.75 Total: -1.00 -27.32 381.56 -10.77 -38.09 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -8.23 Total: 6.71 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: -2.54 Total: -30.43 kcal Atomic # 7 Polarization: -28.97 SS G_CDS: -0.36 Total: -29.33 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.35 Total: -4.69 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -27.32 -10.77 -38.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451845682.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.235 kcal (2) G-P(sol) polarization free energy of solvation -27.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds