Wall clock time and date at job start Tue Mar 31 2020 11:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99770 * 2 1 4 4 H 1.08997 * 112.88648 * 341.35051 * 3 2 1 5 5 C 1.53958 * 113.65762 * 112.81316 * 3 2 1 6 6 C 1.53958 * 87.29230 * 139.20441 * 5 3 2 7 7 H 1.08999 * 113.66267 * 89.74156 * 6 5 3 8 8 N 1.46897 * 113.65895 * 220.79434 * 6 5 3 9 9 C 1.46905 * 110.99990 * 171.54401 * 8 6 5 10 10 C 1.46899 * 111.00461 * 295.49328 * 8 6 5 11 11 C 1.50696 * 109.47609 * 170.00192 * 10 8 6 12 12 C 1.38636 * 119.74871 * 269.73230 * 11 10 8 13 13 C 1.37617 * 120.24810 * 179.71819 * 12 11 10 14 14 C 1.40723 * 119.74340 * 0.57087 * 13 12 11 15 15 C 1.41390 * 120.24209 * 179.67959 * 14 13 12 16 16 H 1.07997 * 120.00536 * 25.52130 * 15 14 13 17 17 C 1.39950 * 119.99481 * 205.51548 * 15 14 13 18 18 N 1.30818 * 120.00179 * 13.39443 * 17 15 14 19 19 Si 1.86808 * 119.99823 * 193.38971 * 17 15 14 20 20 H 1.48493 * 109.47079 * 90.00062 * 19 17 15 21 21 H 1.48499 * 109.47016 * 210.00525 * 19 17 15 22 22 H 1.48500 * 109.47009 * 330.00342 * 19 17 15 23 23 C 1.40719 * 119.50891 * 359.70287 * 14 13 12 24 24 C 1.37614 * 119.74533 * 359.97438 * 23 14 13 25 25 C 1.52906 * 86.78100 * 335.26410 * 6 5 3 26 26 C 1.52908 * 121.13816 * 259.17966 * 25 6 5 27 27 C 1.53957 * 86.88314 * 209.43687 * 26 25 6 28 28 C 1.53106 * 121.19780 * 150.66269 * 25 6 5 29 29 H 1.09007 * 109.46971 * 59.99728 * 1 2 3 30 30 H 1.08993 * 109.46937 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46927 * 300.00333 * 1 2 3 32 32 H 1.08995 * 113.57974 * 253.80015 * 5 3 2 33 33 H 1.08994 * 113.58067 * 24.52508 * 5 3 2 34 34 H 1.09000 * 109.47143 * 55.18287 * 9 8 6 35 35 H 1.08996 * 109.47284 * 175.19040 * 9 8 6 36 36 H 1.09002 * 109.46693 * 295.18614 * 9 8 6 37 37 H 1.09000 * 109.47241 * 290.00668 * 10 8 6 38 38 H 1.09001 * 109.47036 * 49.99961 * 10 8 6 39 39 H 1.08001 * 119.87691 * 359.97403 * 12 11 10 40 40 H 1.07997 * 120.13425 * 180.27688 * 13 12 11 41 41 H 0.97004 * 119.99935 * 179.97438 * 18 17 15 42 42 H 1.07998 * 120.12246 * 180.02562 * 23 14 13 43 43 H 1.08000 * 119.87447 * 179.97438 * 24 23 14 44 44 H 1.08992 * 113.66662 * 94.91777 * 26 25 6 45 45 H 1.08998 * 113.66006 * 323.94817 * 26 25 6 46 46 H 1.08995 * 113.58025 * 139.29269 * 27 26 25 47 47 H 1.09002 * 113.57335 * 270.07929 * 27 26 25 48 48 H 1.08997 * 113.58120 * 36.03958 * 28 25 6 49 49 H 1.09005 * 113.80307 * 265.01993 * 28 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3134 2.0797 -0.3211 5 6 2.7610 1.6475 1.2999 6 6 3.8399 2.3026 0.4183 7 1 3.6579 3.3580 0.2158 8 7 5.2121 2.0340 0.8685 9 6 6.1922 2.5114 -0.1161 10 6 5.4592 2.6294 2.1885 11 6 6.7772 2.1331 2.7248 12 6 6.8161 0.9828 3.4976 13 6 8.0147 0.5172 3.9878 14 6 9.2022 1.2201 3.7119 15 6 10.4386 0.7549 4.2159 16 1 10.5698 -0.2929 4.4421 17 6 11.4925 1.6524 4.4215 18 7 11.2675 2.9410 4.4025 19 14 13.2207 1.0104 4.7232 20 1 13.9276 0.8634 3.4257 21 1 13.9608 1.9671 5.5847 22 1 13.1472 -0.3098 5.3992 23 6 9.1498 2.3897 2.9312 24 6 7.9408 2.8331 2.4459 25 6 3.3679 1.3728 -0.7002 26 6 4.1411 0.1008 -1.0500 27 6 3.6213 0.2810 -2.4879 28 6 3.4809 1.7810 -2.1715 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.2300 2.3548 1.9369 33 1 3.1134 0.7709 1.8434 34 1 6.0185 3.5683 -0.3186 35 1 7.1991 2.3779 0.2793 36 1 6.0861 1.9423 -1.0397 37 1 5.4897 3.7152 2.0974 38 1 4.6587 2.3445 2.8712 39 1 5.9028 0.4478 3.7123 40 1 8.0435 -0.3816 4.5859 41 1 11.9980 3.5631 4.5454 42 1 10.0551 2.9367 2.7130 43 1 7.8982 3.7307 1.8468 44 1 3.7599 -0.7927 -0.5558 45 1 5.2221 0.2070 -0.9591 46 1 4.3680 0.0645 -3.2518 47 1 2.6693 -0.2167 -2.6729 48 1 4.3761 2.3611 -2.3956 49 1 2.5730 2.2300 -2.5744 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451845682.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:20 Heat of formation + Delta-G solvation = 10.222337 kcal Electronic energy + Delta-G solvation = -26677.691062 eV Core-core repulsion = 23184.359189 eV Total energy + Delta-G solvation = -3493.331873 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 4.45 seconds Orbital eigenvalues (eV) -41.81562 -39.62876 -37.99752 -37.25402 -35.53790 -34.41234 -31.92401 -31.16224 -28.80164 -27.85809 -26.86580 -26.46929 -25.61321 -24.86273 -23.15314 -22.73824 -21.75066 -21.13402 -19.19626 -19.11882 -17.68055 -17.19598 -16.93278 -16.69112 -16.25896 -15.96200 -15.70933 -15.61215 -15.43912 -15.16943 -14.69824 -14.38645 -14.13721 -13.79944 -13.66580 -13.41047 -13.16228 -12.99671 -12.93059 -12.88255 -12.70536 -12.67583 -12.48013 -12.43135 -12.32770 -12.14332 -11.92189 -11.88666 -11.44223 -11.25591 -11.09380 -11.01847 -11.00725 -10.72924 -10.20637 -9.34059 -9.19941 -9.01911 -8.58061 -6.32059 0.96677 1.19487 1.37616 1.50418 1.51937 2.21709 2.66502 2.84632 3.33360 3.55507 3.57473 3.75736 3.80267 3.86885 3.93943 4.05349 4.24407 4.31166 4.35999 4.53048 4.55196 4.56203 4.59316 4.61547 4.65331 4.70771 4.74003 4.79150 4.88002 4.90464 4.91975 5.00079 5.07104 5.07812 5.12920 5.14839 5.18490 5.28205 5.34761 5.42120 5.52022 5.57893 5.68280 5.74535 6.00375 6.14117 6.16078 6.32218 6.40225 6.42931 6.43898 6.74341 6.97972 7.07696 8.37249 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.025315 B = 0.002736 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.798142 B =10231.341149 C =10427.791579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.391 6.391 3 C 0.094 3.906 4 H 0.109 0.891 5 C -0.141 4.141 6 C 0.064 3.936 7 H 0.072 0.928 8 N -0.523 5.523 9 C 0.027 3.973 10 C 0.127 3.873 11 C -0.187 4.187 12 C -0.075 4.075 13 C -0.242 4.242 14 C 0.077 3.923 15 C -0.501 4.501 16 H 0.071 0.929 17 C 0.032 3.968 18 N -0.831 5.831 19 Si 0.983 3.017 20 H -0.262 1.262 21 H -0.267 1.267 22 H -0.260 1.260 23 C -0.187 4.187 24 C -0.095 4.095 25 C -0.087 4.087 26 C -0.100 4.100 27 C -0.132 4.132 28 C -0.121 4.121 29 H 0.053 0.947 30 H 0.091 0.909 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.026 0.974 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.028 0.972 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.286 0.714 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.052 0.948 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.080 0.920 48 H 0.082 0.918 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.066 0.450 -11.681 21.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.310 6.310 3 C 0.036 3.964 4 H 0.126 0.874 5 C -0.179 4.179 6 C -0.044 4.044 7 H 0.089 0.911 8 N -0.247 5.247 9 C -0.121 4.121 10 C 0.000 4.000 11 C -0.188 4.188 12 C -0.093 4.093 13 C -0.262 4.262 14 C 0.075 3.925 15 C -0.532 4.532 16 H 0.089 0.911 17 C -0.181 4.181 18 N -0.458 5.458 19 Si 0.804 3.196 20 H -0.187 1.187 21 H -0.192 1.192 22 H -0.184 1.184 23 C -0.206 4.206 24 C -0.113 4.113 25 C -0.088 4.088 26 C -0.137 4.137 27 C -0.169 4.169 28 C -0.159 4.159 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.045 0.955 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.046 0.954 38 H 0.093 0.907 39 H 0.127 0.873 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.071 0.929 45 H 0.092 0.908 46 H 0.086 0.914 47 H 0.099 0.901 48 H 0.100 0.900 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.813 0.006 -11.597 21.255 hybrid contribution 0.885 0.842 0.494 1.317 sum -16.928 0.848 -11.102 20.262 Atomic orbital electron populations 1.22950 0.80038 1.03510 1.00703 1.87956 1.20926 1.27568 1.94544 1.23250 0.92512 0.85474 0.95206 0.87382 1.23440 0.96431 1.00832 0.97181 1.22744 0.87875 0.96960 0.96856 0.91052 1.62117 1.01891 1.58765 1.01891 1.22384 0.96397 0.97510 0.95812 1.20597 0.94174 0.95021 0.90187 1.19269 0.94327 0.98912 1.06332 1.20589 0.96161 0.95551 0.97019 1.21166 0.93148 1.03498 1.08366 1.17957 0.92927 0.92098 0.89509 1.19825 0.97205 0.95821 1.40303 0.91115 1.26733 1.04801 0.94477 0.92111 1.69866 1.35196 1.03675 1.37078 0.85194 0.76086 0.79169 0.79174 1.18704 1.19173 1.18411 1.21330 0.97069 1.00236 1.01981 1.20719 0.92750 0.98499 0.99370 1.22848 0.95166 0.97229 0.93558 1.22278 0.99173 0.96139 0.96141 1.22782 1.01297 0.96481 0.96334 1.22804 1.02369 0.96643 0.94037 0.92873 0.89091 0.93456 0.90215 0.90519 0.95533 0.92734 0.90905 0.95386 0.90671 0.87335 0.89028 0.90353 0.87983 0.88179 0.92875 0.90755 0.91380 0.90109 0.89995 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.85 113.37 1.23 1.57 16 2 O -0.39 -8.40 9.90 -148.98 -1.48 -9.87 16 3 C 0.09 1.83 4.19 30.89 0.13 1.96 16 4 H 0.11 1.59 7.87 -2.39 -0.02 1.57 16 5 C -0.14 -3.17 6.58 31.24 0.21 -2.96 16 6 C 0.06 1.52 3.05 45.21 0.14 1.66 16 7 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 8 N -0.52 -15.73 4.08 -899.89 -3.67 -19.40 16 9 C 0.03 0.80 8.90 127.69 1.14 1.94 16 10 C 0.13 4.26 5.03 85.56 0.43 4.69 16 11 C -0.19 -7.95 4.93 -19.68 -0.10 -8.05 16 12 C -0.07 -3.38 9.67 22.22 0.21 -3.16 16 13 C -0.24 -12.42 9.80 22.73 0.22 -12.20 16 14 C 0.08 4.33 5.58 -21.29 -0.12 4.21 16 15 C -0.50 -28.13 9.07 23.46 0.21 -27.92 16 16 H 0.07 3.86 7.88 -2.91 -0.02 3.84 16 17 C 0.03 1.68 5.23 85.26 0.45 2.13 16 18 N -0.83 -44.70 10.77 21.83 0.23 -44.47 16 19 Si 0.98 39.54 29.58 68.60 2.03 41.57 16 20 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 21 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 22 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 23 C -0.19 -10.06 8.69 22.73 0.20 -9.87 16 24 C -0.09 -4.39 7.82 22.22 0.17 -4.22 16 25 C -0.09 -1.88 0.76 -52.25 -0.04 -1.92 16 26 C -0.10 -2.49 6.88 30.89 0.21 -2.28 16 27 C -0.13 -2.57 8.09 31.24 0.25 -2.32 16 28 C -0.12 -2.19 7.71 30.95 0.24 -1.95 16 29 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.03 0.71 8.13 -2.39 -0.02 0.69 16 35 H 0.05 1.94 5.55 -2.39 -0.01 1.92 16 36 H 0.07 1.96 5.57 -2.39 -0.01 1.95 16 37 H 0.03 0.91 8.06 -2.39 -0.02 0.89 16 38 H 0.07 2.38 7.11 -2.39 -0.02 2.36 16 39 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 40 H 0.09 4.51 8.06 -2.91 -0.02 4.49 16 41 H 0.29 13.89 8.30 -92.71 -0.77 13.13 16 42 H 0.10 5.79 6.07 -2.91 -0.02 5.77 16 43 H 0.10 4.20 7.89 -2.91 -0.02 4.18 16 44 H 0.05 1.50 7.65 -2.39 -0.02 1.48 16 45 H 0.07 2.12 6.13 -2.39 -0.01 2.10 16 46 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.08 1.51 7.50 -2.39 -0.02 1.49 16 49 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -61.15 381.56 3.22 -57.93 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.91 Total: 32.94 kcal Atomic # 6 Polarization: -63.89 SS G_CDS: 5.19 Total: -58.71 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: -3.43 Total: -63.86 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -1.48 Total: -9.87 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -61.15 3.22 -57.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451845682.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.149 kcal (2) G-P(sol) polarization free energy of solvation -61.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.45 seconds