Wall clock time and date at job start Tue Mar 31 2020 12:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42896 * 114.00547 * 2 1 4 4 H 1.09001 * 112.88453 * 21.84207 * 3 2 1 5 5 C 1.53955 * 113.66315 * 250.49793 * 3 2 1 6 6 C 1.53950 * 87.29209 * 270.16773 * 5 3 2 7 7 H 1.08999 * 113.66607 * 89.83591 * 6 5 3 8 8 N 1.46904 * 113.65889 * 220.79523 * 6 5 3 9 9 C 1.46906 * 110.99724 * 276.82573 * 8 6 5 10 10 H 1.08996 * 109.47254 * 13.65188 * 9 8 6 11 11 C 1.53006 * 109.46542 * 253.65473 * 9 8 6 12 12 C 1.50706 * 109.46539 * 174.18028 * 11 9 8 13 13 H 1.07999 * 120.00022 * 0.48942 * 12 11 9 14 14 C 1.37875 * 119.99598 * 180.49535 * 12 11 9 15 15 N 1.31509 * 120.00251 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00001 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46828 * 59.99617 * 16 14 12 18 18 H 1.48497 * 109.47252 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46854 * 299.99969 * 16 14 12 20 20 C 1.50702 * 109.47142 * 133.66034 * 9 8 6 21 21 C 1.38232 * 119.99874 * 39.71937 * 20 9 8 22 22 C 1.38239 * 119.99498 * 179.74843 * 21 20 9 23 23 C 1.38230 * 119.99996 * 0.52961 * 22 21 20 24 24 C 1.38236 * 120.00411 * 359.74798 * 23 22 21 25 25 C 1.38230 * 119.99773 * 219.99741 * 20 9 8 26 26 C 1.52903 * 86.78398 * 335.26372 * 6 5 3 27 27 C 1.52904 * 121.14185 * 259.18208 * 26 6 5 28 28 C 1.53946 * 86.78561 * 209.38321 * 27 26 6 29 29 C 1.52915 * 121.13724 * 150.61818 * 26 6 5 30 30 H 1.09003 * 109.46969 * 299.99834 * 1 2 3 31 31 H 1.08998 * 109.47065 * 59.99746 * 1 2 3 32 32 H 1.09007 * 109.47629 * 180.02562 * 1 2 3 33 33 H 1.08999 * 113.57651 * 155.56082 * 5 3 2 34 34 H 1.08999 * 113.64927 * 24.78320 * 5 3 2 35 35 H 1.00893 * 111.00436 * 152.87075 * 8 6 5 36 36 H 1.08999 * 109.47346 * 294.17583 * 11 9 8 37 37 H 1.08996 * 109.47315 * 54.18303 * 11 9 8 38 38 H 0.97003 * 120.00785 * 180.02562 * 15 14 12 39 39 H 1.07998 * 120.00777 * 0.02562 * 21 20 9 40 40 H 1.08004 * 119.99832 * 180.29898 * 22 21 20 41 41 H 1.08008 * 119.99886 * 179.77238 * 23 22 21 42 42 H 1.07992 * 120.00256 * 180.02562 * 24 23 22 43 43 H 1.08004 * 120.00140 * 0.02562 * 25 20 9 44 44 H 1.08997 * 113.66128 * 323.85705 * 27 26 6 45 45 H 1.09002 * 113.66064 * 94.90675 * 27 26 6 46 46 H 1.09003 * 113.57787 * 270.12759 * 28 27 26 47 47 H 1.09000 * 113.58219 * 139.33458 * 28 27 26 48 48 H 1.09004 * 113.66426 * 265.09644 * 29 26 6 49 49 H 1.08999 * 113.65586 * 36.05535 * 29 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3312 2.0718 0.3736 5 6 2.6917 1.6783 -1.3292 6 6 3.9825 1.0670 -0.7547 7 1 4.0957 0.0040 -0.9677 8 7 5.1908 1.8433 -1.0638 9 6 5.7022 1.5113 -2.4003 10 1 4.9452 0.9527 -2.9507 11 6 6.9665 0.6602 -2.2656 12 6 7.4103 0.2004 -3.6304 13 1 6.8514 0.4931 -4.5070 14 6 8.5296 -0.5941 -3.7600 15 7 9.2103 -0.9503 -2.6926 16 14 9.0793 -1.1647 -5.4517 17 1 9.3780 0.0171 -6.2998 18 1 10.2999 -2.0001 -5.3199 19 1 7.9972 -1.9642 -6.0801 20 6 6.0285 2.7813 -3.1431 21 6 6.6211 3.8383 -2.4778 22 6 6.9252 5.0013 -3.1604 23 6 6.6266 5.1114 -4.5056 24 6 6.0287 4.0566 -5.1695 25 6 5.7300 2.8914 -4.4883 26 6 3.4027 1.3594 0.6295 27 6 3.8586 2.5751 1.4371 28 6 3.5434 1.7480 2.6967 29 6 3.7592 0.4900 1.8359 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 2.7563 2.7530 -1.4995 34 1 2.2980 1.1369 -2.1894 35 1 5.9003 1.7035 -0.3602 36 1 7.7573 1.2542 -1.8074 37 1 6.7555 -0.2076 -1.6407 38 1 9.9981 -1.5090 -2.7837 39 1 6.8507 3.7538 -1.4259 40 1 7.3926 5.8253 -2.6418 41 1 6.8608 6.0215 -5.0380 42 1 5.7959 4.1425 -6.2205 43 1 5.2625 2.0674 -5.0069 44 1 4.9172 2.8065 1.3194 45 1 3.2167 3.4475 1.3146 46 1 2.5186 1.8643 3.0495 47 1 4.2808 1.8647 3.4908 48 1 3.0379 -0.3033 2.0319 49 1 4.7894 0.1341 1.8293 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453171568.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:53 Heat of formation + Delta-G solvation = 21.498847 kcal Electronic energy + Delta-G solvation = -27099.731778 eV Core-core repulsion = 23606.888891 eV Total energy + Delta-G solvation = -3492.842887 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.68064 -38.68420 -37.06775 -35.79081 -33.76714 -32.35989 -30.32221 -29.97908 -28.25841 -26.77009 -25.59195 -24.87401 -24.22497 -22.92772 -22.13789 -21.70974 -20.57746 -19.51560 -18.06768 -16.69104 -16.49267 -16.05626 -15.65740 -15.60441 -14.93162 -14.75241 -14.58340 -14.44711 -14.23111 -13.85304 -13.31331 -12.87153 -12.69183 -12.54792 -12.43970 -12.25900 -12.10745 -11.95734 -11.74623 -11.68287 -11.36115 -11.29958 -10.98315 -10.94841 -10.76801 -10.64684 -10.33264 -10.25148 -10.15258 -9.89408 -9.77943 -9.61883 -9.28947 -9.15488 -8.37154 -8.20424 -7.96470 -7.67945 -6.00408 -4.01974 2.11170 2.13496 3.33888 3.38029 3.40963 3.54098 4.43365 4.49899 4.56634 4.64853 4.69107 4.88416 4.91578 5.00646 5.14209 5.20866 5.26509 5.35587 5.36644 5.50768 5.51907 5.53443 5.55934 5.67683 5.75346 5.80437 5.88043 5.94607 6.01738 6.07715 6.13700 6.16071 6.18949 6.26674 6.28677 6.40624 6.50095 6.58791 6.66922 6.72770 6.80226 7.12756 7.13934 7.21346 7.37169 7.45762 7.59384 7.74149 7.81099 7.99316 8.00420 8.39607 9.02299 9.61864 11.10738 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.010824 B = 0.004356 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.289160 B = 6426.907746 C = 7473.285469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.364 6.364 3 C 0.087 3.913 4 H 0.071 0.929 5 C -0.142 4.142 6 C 0.085 3.915 7 H 0.069 0.931 8 N -0.674 5.674 9 C 0.121 3.879 10 H 0.066 0.934 11 C 0.013 3.987 12 C -0.512 4.512 13 H 0.058 0.942 14 C 0.060 3.940 15 N -0.896 5.896 16 Si 0.888 3.112 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.018 4.018 21 C -0.097 4.097 22 C -0.130 4.130 23 C -0.142 4.142 24 C -0.127 4.127 25 C -0.111 4.111 26 C -0.095 4.095 27 C -0.096 4.096 28 C -0.144 4.144 29 C -0.124 4.124 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.339 0.661 36 H 0.022 0.978 37 H 0.017 0.983 38 H 0.260 0.740 39 H 0.116 0.884 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.113 0.887 44 H 0.094 0.906 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.070 0.930 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.433 8.012 6.841 17.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.283 6.283 3 C 0.028 3.972 4 H 0.089 0.911 5 C -0.180 4.180 6 C -0.025 4.025 7 H 0.086 0.914 8 N -0.304 5.304 9 C 0.012 3.988 10 H 0.084 0.916 11 C -0.025 4.025 12 C -0.551 4.551 13 H 0.076 0.924 14 C -0.141 4.141 15 N -0.535 5.535 16 Si 0.716 3.284 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.019 4.019 21 C -0.115 4.115 22 C -0.148 4.148 23 C -0.160 4.160 24 C -0.145 4.145 25 C -0.130 4.130 26 C -0.096 4.096 27 C -0.133 4.133 28 C -0.182 4.182 29 C -0.162 4.162 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.085 0.915 35 H 0.157 0.843 36 H 0.040 0.960 37 H 0.036 0.964 38 H 0.070 0.930 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.131 0.869 44 H 0.113 0.887 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.083 0.917 48 H 0.088 0.912 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.520 8.281 6.690 18.005 hybrid contribution 0.706 -1.133 -0.957 1.642 sum -13.815 7.148 5.733 16.577 Atomic orbital electron populations 1.22773 0.81349 1.02558 0.99754 1.87893 1.19196 1.26616 1.94548 1.22690 0.92927 0.84626 0.96935 0.91130 1.23496 0.96140 1.01848 0.96529 1.22626 0.90113 0.95766 0.94001 0.91363 1.60729 1.07745 1.57656 1.04229 1.20713 0.98332 0.91979 0.87745 0.91580 1.19604 0.91045 0.93959 0.97883 1.21079 1.10784 1.30477 0.92723 0.92413 1.24960 0.96568 0.96215 0.96402 1.69939 1.18323 1.36894 1.28342 0.86712 0.78041 0.78761 0.84886 1.20172 1.21350 1.20282 1.19766 0.94482 0.94519 0.93129 1.20819 0.98282 0.92763 0.99633 1.20993 1.01180 0.97988 0.94628 1.20880 1.01641 0.98572 0.94941 1.20940 1.00521 0.94055 0.99026 1.20948 1.00727 0.96879 0.94397 1.22783 0.94691 0.98607 0.93488 1.22440 1.02192 0.95104 0.93590 1.22885 1.01093 0.97290 0.96895 1.22646 1.01891 0.96592 0.95064 0.94282 0.94093 0.89742 0.88741 0.91476 0.84268 0.96005 0.96444 0.93006 0.86564 0.87277 0.87435 0.87256 0.86873 0.88740 0.91784 0.90914 0.91651 0.91167 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.86 101.05 1.10 1.40 16 2 O -0.36 -4.79 10.21 -35.23 -0.36 -5.15 16 3 C 0.09 1.08 4.14 -26.28 -0.11 0.97 16 4 H 0.07 0.77 7.90 -51.93 -0.41 0.36 16 5 C -0.14 -1.98 7.67 -25.75 -0.20 -2.17 16 6 C 0.09 1.32 3.42 -67.26 -0.23 1.09 16 7 H 0.07 1.24 8.13 -51.93 -0.42 0.81 16 8 N -0.67 -11.22 4.91 -100.48 -0.49 -11.71 16 9 C 0.12 2.42 2.35 -68.86 -0.16 2.26 16 10 H 0.07 1.38 7.45 -51.93 -0.39 1.00 16 11 C 0.01 0.32 4.29 -27.88 -0.12 0.20 16 12 C -0.51 -14.05 8.60 -34.44 -0.30 -14.35 16 13 H 0.06 1.55 6.57 -52.49 -0.34 1.21 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.90 -26.65 13.28 55.43 0.74 -25.91 16 16 Si 0.89 21.83 29.54 -169.99 -5.02 16.80 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C -0.02 -0.36 4.50 -104.63 -0.47 -0.83 16 21 C -0.10 -1.76 9.33 -39.58 -0.37 -2.13 16 22 C -0.13 -2.15 10.05 -39.58 -0.40 -2.54 16 23 C -0.14 -2.29 10.05 -39.58 -0.40 -2.68 16 24 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 25 C -0.11 -2.10 8.71 -39.58 -0.34 -2.45 16 26 C -0.10 -1.23 0.97 -154.72 -0.15 -1.38 16 27 C -0.10 -1.10 7.43 -26.29 -0.20 -1.29 16 28 C -0.14 -1.52 8.08 -25.75 -0.21 -1.73 16 29 C -0.12 -1.55 7.71 -26.28 -0.20 -1.76 16 30 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 33 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.34 5.73 7.77 -39.30 -0.31 5.43 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.12 2.03 7.71 -52.49 -0.40 1.62 16 40 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 41 H 0.11 1.44 8.06 -52.48 -0.42 1.01 16 42 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 43 H 0.11 2.10 7.83 -52.48 -0.41 1.69 16 44 H 0.09 1.14 7.40 -51.93 -0.38 0.76 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.07 0.90 7.83 -51.93 -0.41 0.49 16 49 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 393.57 15.07 5.93 5.93 Total: -1.00 -29.79 393.57 -10.98 -40.78 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -8.53 Total: 7.60 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: -3.25 Total: -28.34 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.24 Total: -37.62 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.36 Total: -5.15 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.79 -10.98 -40.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453171568.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.277 kcal (2) G-P(sol) polarization free energy of solvation -29.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds