Wall clock time and date at job start Tue Mar 31 2020 12:26:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42893 * 1
3 3 C 1.42896 * 114.00547 * 2 1
4 4 H 1.09001 * 112.88453 * 21.84207 * 3 2 1
5 5 C 1.53955 * 113.66315 * 250.49793 * 3 2 1
6 6 C 1.53950 * 87.29209 * 270.16773 * 5 3 2
7 7 H 1.08999 * 113.66607 * 89.83591 * 6 5 3
8 8 N 1.46904 * 113.65889 * 220.79523 * 6 5 3
9 9 C 1.46906 * 110.99724 * 276.82573 * 8 6 5
10 10 H 1.08996 * 109.47254 * 13.65188 * 9 8 6
11 11 C 1.53006 * 109.46542 * 253.65473 * 9 8 6
12 12 C 1.50706 * 109.46539 * 174.18028 * 11 9 8
13 13 H 1.07999 * 120.00022 * 0.48942 * 12 11 9
14 14 C 1.37875 * 119.99598 * 180.49535 * 12 11 9
15 15 N 1.31509 * 120.00251 * 359.97438 * 14 12 11
16 16 Si 1.86802 * 120.00001 * 179.97438 * 14 12 11
17 17 H 1.48501 * 109.46828 * 59.99617 * 16 14 12
18 18 H 1.48497 * 109.47252 * 179.97438 * 16 14 12
19 19 H 1.48499 * 109.46854 * 299.99969 * 16 14 12
20 20 C 1.50702 * 109.47142 * 133.66034 * 9 8 6
21 21 C 1.38232 * 119.99874 * 39.71937 * 20 9 8
22 22 C 1.38239 * 119.99498 * 179.74843 * 21 20 9
23 23 C 1.38230 * 119.99996 * 0.52961 * 22 21 20
24 24 C 1.38236 * 120.00411 * 359.74798 * 23 22 21
25 25 C 1.38230 * 119.99773 * 219.99741 * 20 9 8
26 26 C 1.52903 * 86.78398 * 335.26372 * 6 5 3
27 27 C 1.52904 * 121.14185 * 259.18208 * 26 6 5
28 28 C 1.53946 * 86.78561 * 209.38321 * 27 26 6
29 29 C 1.52915 * 121.13724 * 150.61818 * 26 6 5
30 30 H 1.09003 * 109.46969 * 299.99834 * 1 2 3
31 31 H 1.08998 * 109.47065 * 59.99746 * 1 2 3
32 32 H 1.09007 * 109.47629 * 180.02562 * 1 2 3
33 33 H 1.08999 * 113.57651 * 155.56082 * 5 3 2
34 34 H 1.08999 * 113.64927 * 24.78320 * 5 3 2
35 35 H 1.00893 * 111.00436 * 152.87075 * 8 6 5
36 36 H 1.08999 * 109.47346 * 294.17583 * 11 9 8
37 37 H 1.08996 * 109.47315 * 54.18303 * 11 9 8
38 38 H 0.97003 * 120.00785 * 180.02562 * 15 14 12
39 39 H 1.07998 * 120.00777 * 0.02562 * 21 20 9
40 40 H 1.08004 * 119.99832 * 180.29898 * 22 21 20
41 41 H 1.08008 * 119.99886 * 179.77238 * 23 22 21
42 42 H 1.07992 * 120.00256 * 180.02562 * 24 23 22
43 43 H 1.08004 * 120.00140 * 0.02562 * 25 20 9
44 44 H 1.08997 * 113.66128 * 323.85705 * 27 26 6
45 45 H 1.09002 * 113.66064 * 94.90675 * 27 26 6
46 46 H 1.09003 * 113.57787 * 270.12759 * 28 27 26
47 47 H 1.09000 * 113.58219 * 139.33458 * 28 27 26
48 48 H 1.09004 * 113.66426 * 265.09644 * 29 26 6
49 49 H 1.08999 * 113.65586 * 36.05535 * 29 26 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 1 1.3312 2.0718 0.3736
5 6 2.6917 1.6783 -1.3292
6 6 3.9825 1.0670 -0.7547
7 1 4.0957 0.0040 -0.9677
8 7 5.1908 1.8433 -1.0638
9 6 5.7022 1.5113 -2.4003
10 1 4.9452 0.9527 -2.9507
11 6 6.9665 0.6602 -2.2656
12 6 7.4103 0.2004 -3.6304
13 1 6.8514 0.4931 -4.5070
14 6 8.5296 -0.5941 -3.7600
15 7 9.2103 -0.9503 -2.6926
16 14 9.0793 -1.1647 -5.4517
17 1 9.3780 0.0171 -6.2998
18 1 10.2999 -2.0001 -5.3199
19 1 7.9972 -1.9642 -6.0801
20 6 6.0285 2.7813 -3.1431
21 6 6.6211 3.8383 -2.4778
22 6 6.9252 5.0013 -3.1604
23 6 6.6266 5.1114 -4.5056
24 6 6.0287 4.0566 -5.1695
25 6 5.7300 2.8914 -4.4883
26 6 3.4027 1.3594 0.6295
27 6 3.8586 2.5751 1.4371
28 6 3.5434 1.7480 2.6967
29 6 3.7592 0.4900 1.8359
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 0.5139 -0.8899
32 1 -0.3634 -1.0277 0.0005
33 1 2.7563 2.7530 -1.4995
34 1 2.2980 1.1369 -2.1894
35 1 5.9003 1.7035 -0.3602
36 1 7.7573 1.2542 -1.8074
37 1 6.7555 -0.2076 -1.6407
38 1 9.9981 -1.5090 -2.7837
39 1 6.8507 3.7538 -1.4259
40 1 7.3926 5.8253 -2.6418
41 1 6.8608 6.0215 -5.0380
42 1 5.7959 4.1425 -6.2205
43 1 5.2625 2.0674 -5.0069
44 1 4.9172 2.8065 1.3194
45 1 3.2167 3.4475 1.3146
46 1 2.5186 1.8643 3.0495
47 1 4.2808 1.8647 3.4908
48 1 3.0379 -0.3033 2.0319
49 1 4.7894 0.1341 1.8293
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000453171568.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:26:52
Heat of formation + Delta-G solvation = 6.194889 kcal
Electronic energy + Delta-G solvation = -27100.395407 eV
Core-core repulsion = 23606.888891 eV
Total energy + Delta-G solvation = -3493.506516 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-41.76633 -40.08626 -38.02531 -37.21654 -35.26478 -34.17846 -31.69698 -31.31807
-30.12142 -27.62233 -26.65214 -26.35896 -25.40435 -24.22997 -23.82765 -23.08969
-21.65073 -21.04479 -19.12687 -18.53528 -17.84843 -17.33317 -16.86771 -16.66101
-16.51918 -16.06572 -15.93753 -15.66098 -15.60165 -14.96342 -14.68689 -14.39222
-14.34235 -14.02281 -13.74785 -13.50197 -13.25614 -13.07519 -13.03933 -13.00539
-12.79320 -12.68718 -12.55638 -12.45029 -12.27196 -11.93327 -11.78560 -11.69028
-11.56622 -11.30276 -11.16035 -10.96624 -10.79922 -10.56890 -10.28040 -9.58404
-9.38747 -9.20165 -8.19689 -6.28737 0.73000 0.75709 1.36026 1.38506
1.45751 2.38606 2.63205 3.09461 3.14749 3.34967 3.51338 3.60988
3.85094 3.90525 3.94854 4.05944 4.18684 4.24617 4.28564 4.37127
4.45698 4.50358 4.55109 4.56551 4.59995 4.60598 4.80797 4.83496
4.85399 4.88987 4.92181 4.95151 4.97180 5.06540 5.14323 5.17914
5.22725 5.25260 5.35503 5.44698 5.51038 5.54895 5.64529 5.71659
5.79340 5.83411 5.95736 6.12266 6.32575 6.36866 6.39257 6.51352
6.84560 7.39073 8.91199
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.010824 B = 0.004356 C = 0.003746
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2586.289160 B = 6426.907746 C = 7473.285469
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.392 6.392
3 C 0.099 3.901
4 H 0.098 0.902
5 C -0.137 4.137
6 C 0.071 3.929
7 H 0.031 0.969
8 N -0.654 5.654
9 C 0.140 3.860
10 H 0.049 0.951
11 C 0.026 3.974
12 C -0.523 4.523
13 H 0.061 0.939
14 C 0.004 3.996
15 N -0.932 5.932
16 Si 0.953 3.047
17 H -0.269 1.269
18 H -0.284 1.284
19 H -0.268 1.268
20 C -0.043 4.043
21 C -0.111 4.111
22 C -0.130 4.130
23 C -0.138 4.138
24 C -0.130 4.130
25 C -0.133 4.133
26 C -0.094 4.094
27 C -0.092 4.092
28 C -0.127 4.127
29 C -0.132 4.132
30 H 0.057 0.943
31 H 0.047 0.953
32 H 0.094 0.906
33 H 0.099 0.901
34 H 0.055 0.945
35 H 0.334 0.666
36 H -0.003 1.003
37 H -0.015 1.015
38 H 0.261 0.739
39 H 0.116 0.884
40 H 0.139 0.861
41 H 0.143 0.857
42 H 0.135 0.865
43 H 0.106 0.894
44 H 0.085 0.915
45 H 0.079 0.921
46 H 0.090 0.910
47 H 0.075 0.925
48 H 0.065 0.935
49 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.559 10.321 6.383 19.732
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.311 6.311
3 C 0.041 3.959
4 H 0.116 0.884
5 C -0.175 4.175
6 C -0.039 4.039
7 H 0.049 0.951
8 N -0.283 5.283
9 C 0.030 3.970
10 H 0.067 0.933
11 C -0.012 4.012
12 C -0.562 4.562
13 H 0.079 0.921
14 C -0.193 4.193
15 N -0.573 5.573
16 Si 0.778 3.222
17 H -0.194 1.194
18 H -0.209 1.209
19 H -0.193 1.193
20 C -0.043 4.043
21 C -0.129 4.129
22 C -0.148 4.148
23 C -0.156 4.156
24 C -0.148 4.148
25 C -0.152 4.152
26 C -0.094 4.094
27 C -0.129 4.129
28 C -0.165 4.165
29 C -0.169 4.169
30 H 0.076 0.924
31 H 0.066 0.934
32 H 0.112 0.888
33 H 0.117 0.883
34 H 0.074 0.926
35 H 0.152 0.848
36 H 0.016 0.984
37 H 0.003 0.997
38 H 0.070 0.930
39 H 0.134 0.866
40 H 0.157 0.843
41 H 0.161 0.839
42 H 0.153 0.847
43 H 0.124 0.876
44 H 0.103 0.897
45 H 0.098 0.902
46 H 0.109 0.891
47 H 0.093 0.907
48 H 0.084 0.916
49 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -15.672 10.596 6.231 19.918
hybrid contribution 1.040 -1.860 -0.824 2.285
sum -14.632 8.736 5.407 17.879
Atomic orbital electron populations
1.22992 0.79350 1.03709 1.00989 1.87870 1.21496 1.27122 1.94573
1.22598 0.92987 0.85148 0.95204 0.88394 1.23457 0.95143 1.01661
0.97245 1.22698 0.90296 0.93762 0.97189 0.95087 1.60831 1.07784
1.57084 1.02611 1.20321 0.95342 0.91877 0.89440 0.93299 1.19408
0.92609 0.93072 0.96109 1.21461 1.10757 1.30171 0.93775 0.92120
1.25831 0.96789 0.96451 1.00258 1.70073 1.18869 1.37778 1.30567
0.85674 0.77768 0.78505 0.80229 1.19365 1.20899 1.19347 1.19746
0.96366 0.94528 0.93705 1.20952 0.98659 0.93361 0.99940 1.21363
1.00347 0.97903 0.95154 1.21322 0.99995 0.99426 0.94828 1.21275
0.99822 0.93342 1.00322 1.21069 1.01805 0.97964 0.94336 1.22867
0.94799 0.99846 0.91907 1.22428 1.01919 0.95053 0.93541 1.22826
1.02396 0.94826 0.96404 1.22652 1.00824 0.97515 0.95932 0.92402
0.93397 0.88798 0.88292 0.92574 0.84769 0.98445 0.99685 0.92985
0.86585 0.84327 0.83879 0.84670 0.87618 0.89690 0.90213 0.89146
0.90677 0.91578 0.91557
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.44 10.86 113.37 1.23 1.67 16
2 O -0.39 -10.14 10.21 -148.98 -1.52 -11.66 16
3 C 0.10 2.37 4.14 30.89 0.13 2.50 16
4 H 0.10 1.84 7.90 -2.39 -0.02 1.82 16
5 C -0.14 -3.87 7.67 31.23 0.24 -3.63 16
6 C 0.07 2.33 3.42 45.20 0.15 2.48 16
7 H 0.03 1.25 8.13 -2.39 -0.02 1.23 16
8 N -0.65 -23.13 4.91 -471.80 -2.32 -25.45 16
9 C 0.14 5.95 2.35 44.17 0.10 6.05 16
10 H 0.05 2.21 7.45 -2.39 -0.02 2.19 16
11 C 0.03 1.38 4.29 29.85 0.13 1.50 16
12 C -0.52 -29.83 8.60 25.60 0.22 -29.61 16
13 H 0.06 3.36 6.57 -2.91 -0.02 3.34 16
14 C 0.00 0.26 5.46 84.65 0.46 0.72 16
15 N -0.93 -57.37 13.28 21.45 0.28 -57.08 16
16 Si 0.95 45.37 29.54 68.60 2.03 47.40 16
17 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16
18 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16
19 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16
20 C -0.04 -1.71 4.50 -19.87 -0.09 -1.80 16
21 C -0.11 -4.02 9.33 22.27 0.21 -3.82 16
22 C -0.13 -3.99 10.05 22.27 0.22 -3.77 16
23 C -0.14 -3.99 10.05 22.27 0.22 -3.77 16
24 C -0.13 -4.13 10.05 22.27 0.22 -3.91 16
25 C -0.13 -5.06 8.71 22.27 0.19 -4.87 16
26 C -0.09 -2.41 0.97 -52.32 -0.05 -2.47 16
27 C -0.09 -1.99 7.43 30.88 0.23 -1.76 16
28 C -0.13 -2.45 8.08 31.23 0.25 -2.20 16
29 C -0.13 -3.32 7.71 30.89 0.24 -3.08 16
30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16
31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16
32 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16
33 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16
34 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16
35 H 0.33 12.20 7.77 -89.70 -0.70 11.50 16
36 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16
37 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16
38 H 0.26 15.26 8.31 -92.71 -0.77 14.48 16
39 H 0.12 4.10 7.71 -2.91 -0.02 4.08 16
40 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16
41 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16
42 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16
43 H 0.11 4.04 7.83 -2.91 -0.02 4.01 16
44 H 0.08 2.02 7.40 -2.39 -0.02 2.00 16
45 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16
46 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16
47 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16
48 H 0.07 1.71 7.83 -2.39 -0.02 1.69 16
49 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16
Total: -1.00 -66.80 393.57 3.01 -63.79
By element:
Atomic # 1 Polarization: 32.54 SS G_CDS: 0.21 Total: 32.75 kcal
Atomic # 6 Polarization: -54.07 SS G_CDS: 4.32 Total: -49.75 kcal
Atomic # 7 Polarization: -80.50 SS G_CDS: -2.03 Total: -82.53 kcal
Atomic # 8 Polarization: -10.14 SS G_CDS: -1.52 Total: -11.66 kcal
Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal
Total: -66.80 3.01 -63.79 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000453171568.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.989 kcal
(2) G-P(sol) polarization free energy of solvation -66.802 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.187 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.794 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.195 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds