Wall clock time and date at job start Tue Mar 31 2020 12:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42896 * 114.00547 * 2 1 4 4 H 1.09001 * 112.88453 * 21.84207 * 3 2 1 5 5 C 1.53955 * 113.66315 * 250.49793 * 3 2 1 6 6 C 1.53950 * 87.29209 * 270.16773 * 5 3 2 7 7 H 1.08999 * 113.66607 * 89.83591 * 6 5 3 8 8 N 1.46904 * 113.65889 * 220.79523 * 6 5 3 9 9 C 1.46906 * 110.99724 * 276.82573 * 8 6 5 10 10 H 1.08996 * 109.47254 * 13.65188 * 9 8 6 11 11 C 1.53006 * 109.46542 * 253.65473 * 9 8 6 12 12 C 1.50706 * 109.46539 * 174.18028 * 11 9 8 13 13 H 1.07999 * 120.00022 * 0.48942 * 12 11 9 14 14 C 1.37875 * 119.99598 * 180.49535 * 12 11 9 15 15 N 1.31509 * 120.00251 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00001 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46828 * 59.99617 * 16 14 12 18 18 H 1.48497 * 109.47252 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46854 * 299.99969 * 16 14 12 20 20 C 1.50702 * 109.47142 * 133.66034 * 9 8 6 21 21 C 1.38232 * 119.99874 * 39.71937 * 20 9 8 22 22 C 1.38239 * 119.99498 * 179.74843 * 21 20 9 23 23 C 1.38230 * 119.99996 * 0.52961 * 22 21 20 24 24 C 1.38236 * 120.00411 * 359.74798 * 23 22 21 25 25 C 1.38230 * 119.99773 * 219.99741 * 20 9 8 26 26 C 1.52903 * 86.78398 * 335.26372 * 6 5 3 27 27 C 1.52904 * 121.14185 * 259.18208 * 26 6 5 28 28 C 1.53946 * 86.78561 * 209.38321 * 27 26 6 29 29 C 1.52915 * 121.13724 * 150.61818 * 26 6 5 30 30 H 1.09003 * 109.46969 * 299.99834 * 1 2 3 31 31 H 1.08998 * 109.47065 * 59.99746 * 1 2 3 32 32 H 1.09007 * 109.47629 * 180.02562 * 1 2 3 33 33 H 1.08999 * 113.57651 * 155.56082 * 5 3 2 34 34 H 1.08999 * 113.64927 * 24.78320 * 5 3 2 35 35 H 1.00893 * 111.00436 * 152.87075 * 8 6 5 36 36 H 1.08999 * 109.47346 * 294.17583 * 11 9 8 37 37 H 1.08996 * 109.47315 * 54.18303 * 11 9 8 38 38 H 0.97003 * 120.00785 * 180.02562 * 15 14 12 39 39 H 1.07998 * 120.00777 * 0.02562 * 21 20 9 40 40 H 1.08004 * 119.99832 * 180.29898 * 22 21 20 41 41 H 1.08008 * 119.99886 * 179.77238 * 23 22 21 42 42 H 1.07992 * 120.00256 * 180.02562 * 24 23 22 43 43 H 1.08004 * 120.00140 * 0.02562 * 25 20 9 44 44 H 1.08997 * 113.66128 * 323.85705 * 27 26 6 45 45 H 1.09002 * 113.66064 * 94.90675 * 27 26 6 46 46 H 1.09003 * 113.57787 * 270.12759 * 28 27 26 47 47 H 1.09000 * 113.58219 * 139.33458 * 28 27 26 48 48 H 1.09004 * 113.66426 * 265.09644 * 29 26 6 49 49 H 1.08999 * 113.65586 * 36.05535 * 29 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3312 2.0718 0.3736 5 6 2.6917 1.6783 -1.3292 6 6 3.9825 1.0670 -0.7547 7 1 4.0957 0.0040 -0.9677 8 7 5.1908 1.8433 -1.0638 9 6 5.7022 1.5113 -2.4003 10 1 4.9452 0.9527 -2.9507 11 6 6.9665 0.6602 -2.2656 12 6 7.4103 0.2004 -3.6304 13 1 6.8514 0.4931 -4.5070 14 6 8.5296 -0.5941 -3.7600 15 7 9.2103 -0.9503 -2.6926 16 14 9.0793 -1.1647 -5.4517 17 1 9.3780 0.0171 -6.2998 18 1 10.2999 -2.0001 -5.3199 19 1 7.9972 -1.9642 -6.0801 20 6 6.0285 2.7813 -3.1431 21 6 6.6211 3.8383 -2.4778 22 6 6.9252 5.0013 -3.1604 23 6 6.6266 5.1114 -4.5056 24 6 6.0287 4.0566 -5.1695 25 6 5.7300 2.8914 -4.4883 26 6 3.4027 1.3594 0.6295 27 6 3.8586 2.5751 1.4371 28 6 3.5434 1.7480 2.6967 29 6 3.7592 0.4900 1.8359 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 2.7563 2.7530 -1.4995 34 1 2.2980 1.1369 -2.1894 35 1 5.9003 1.7035 -0.3602 36 1 7.7573 1.2542 -1.8074 37 1 6.7555 -0.2076 -1.6407 38 1 9.9981 -1.5090 -2.7837 39 1 6.8507 3.7538 -1.4259 40 1 7.3926 5.8253 -2.6418 41 1 6.8608 6.0215 -5.0380 42 1 5.7959 4.1425 -6.2205 43 1 5.2625 2.0674 -5.0069 44 1 4.9172 2.8065 1.3194 45 1 3.2167 3.4475 1.3146 46 1 2.5186 1.8643 3.0495 47 1 4.2808 1.8647 3.4908 48 1 3.0379 -0.3033 2.0319 49 1 4.7894 0.1341 1.8293 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453171568.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:52 Heat of formation + Delta-G solvation = 6.194889 kcal Electronic energy + Delta-G solvation = -27100.395407 eV Core-core repulsion = 23606.888891 eV Total energy + Delta-G solvation = -3493.506516 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.76633 -40.08626 -38.02531 -37.21654 -35.26478 -34.17846 -31.69698 -31.31807 -30.12142 -27.62233 -26.65214 -26.35896 -25.40435 -24.22997 -23.82765 -23.08969 -21.65073 -21.04479 -19.12687 -18.53528 -17.84843 -17.33317 -16.86771 -16.66101 -16.51918 -16.06572 -15.93753 -15.66098 -15.60165 -14.96342 -14.68689 -14.39222 -14.34235 -14.02281 -13.74785 -13.50197 -13.25614 -13.07519 -13.03933 -13.00539 -12.79320 -12.68718 -12.55638 -12.45029 -12.27196 -11.93327 -11.78560 -11.69028 -11.56622 -11.30276 -11.16035 -10.96624 -10.79922 -10.56890 -10.28040 -9.58404 -9.38747 -9.20165 -8.19689 -6.28737 0.73000 0.75709 1.36026 1.38506 1.45751 2.38606 2.63205 3.09461 3.14749 3.34967 3.51338 3.60988 3.85094 3.90525 3.94854 4.05944 4.18684 4.24617 4.28564 4.37127 4.45698 4.50358 4.55109 4.56551 4.59995 4.60598 4.80797 4.83496 4.85399 4.88987 4.92181 4.95151 4.97180 5.06540 5.14323 5.17914 5.22725 5.25260 5.35503 5.44698 5.51038 5.54895 5.64529 5.71659 5.79340 5.83411 5.95736 6.12266 6.32575 6.36866 6.39257 6.51352 6.84560 7.39073 8.91199 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.010824 B = 0.004356 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.289160 B = 6426.907746 C = 7473.285469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.392 6.392 3 C 0.099 3.901 4 H 0.098 0.902 5 C -0.137 4.137 6 C 0.071 3.929 7 H 0.031 0.969 8 N -0.654 5.654 9 C 0.140 3.860 10 H 0.049 0.951 11 C 0.026 3.974 12 C -0.523 4.523 13 H 0.061 0.939 14 C 0.004 3.996 15 N -0.932 5.932 16 Si 0.953 3.047 17 H -0.269 1.269 18 H -0.284 1.284 19 H -0.268 1.268 20 C -0.043 4.043 21 C -0.111 4.111 22 C -0.130 4.130 23 C -0.138 4.138 24 C -0.130 4.130 25 C -0.133 4.133 26 C -0.094 4.094 27 C -0.092 4.092 28 C -0.127 4.127 29 C -0.132 4.132 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.055 0.945 35 H 0.334 0.666 36 H -0.003 1.003 37 H -0.015 1.015 38 H 0.261 0.739 39 H 0.116 0.884 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.135 0.865 43 H 0.106 0.894 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.065 0.935 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.559 10.321 6.383 19.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.311 6.311 3 C 0.041 3.959 4 H 0.116 0.884 5 C -0.175 4.175 6 C -0.039 4.039 7 H 0.049 0.951 8 N -0.283 5.283 9 C 0.030 3.970 10 H 0.067 0.933 11 C -0.012 4.012 12 C -0.562 4.562 13 H 0.079 0.921 14 C -0.193 4.193 15 N -0.573 5.573 16 Si 0.778 3.222 17 H -0.194 1.194 18 H -0.209 1.209 19 H -0.193 1.193 20 C -0.043 4.043 21 C -0.129 4.129 22 C -0.148 4.148 23 C -0.156 4.156 24 C -0.148 4.148 25 C -0.152 4.152 26 C -0.094 4.094 27 C -0.129 4.129 28 C -0.165 4.165 29 C -0.169 4.169 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.112 0.888 33 H 0.117 0.883 34 H 0.074 0.926 35 H 0.152 0.848 36 H 0.016 0.984 37 H 0.003 0.997 38 H 0.070 0.930 39 H 0.134 0.866 40 H 0.157 0.843 41 H 0.161 0.839 42 H 0.153 0.847 43 H 0.124 0.876 44 H 0.103 0.897 45 H 0.098 0.902 46 H 0.109 0.891 47 H 0.093 0.907 48 H 0.084 0.916 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.672 10.596 6.231 19.918 hybrid contribution 1.040 -1.860 -0.824 2.285 sum -14.632 8.736 5.407 17.879 Atomic orbital electron populations 1.22992 0.79350 1.03709 1.00989 1.87870 1.21496 1.27122 1.94573 1.22598 0.92987 0.85148 0.95204 0.88394 1.23457 0.95143 1.01661 0.97245 1.22698 0.90296 0.93762 0.97189 0.95087 1.60831 1.07784 1.57084 1.02611 1.20321 0.95342 0.91877 0.89440 0.93299 1.19408 0.92609 0.93072 0.96109 1.21461 1.10757 1.30171 0.93775 0.92120 1.25831 0.96789 0.96451 1.00258 1.70073 1.18869 1.37778 1.30567 0.85674 0.77768 0.78505 0.80229 1.19365 1.20899 1.19347 1.19746 0.96366 0.94528 0.93705 1.20952 0.98659 0.93361 0.99940 1.21363 1.00347 0.97903 0.95154 1.21322 0.99995 0.99426 0.94828 1.21275 0.99822 0.93342 1.00322 1.21069 1.01805 0.97964 0.94336 1.22867 0.94799 0.99846 0.91907 1.22428 1.01919 0.95053 0.93541 1.22826 1.02396 0.94826 0.96404 1.22652 1.00824 0.97515 0.95932 0.92402 0.93397 0.88798 0.88292 0.92574 0.84769 0.98445 0.99685 0.92985 0.86585 0.84327 0.83879 0.84670 0.87618 0.89690 0.90213 0.89146 0.90677 0.91578 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.86 113.37 1.23 1.67 16 2 O -0.39 -10.14 10.21 -148.98 -1.52 -11.66 16 3 C 0.10 2.37 4.14 30.89 0.13 2.50 16 4 H 0.10 1.84 7.90 -2.39 -0.02 1.82 16 5 C -0.14 -3.87 7.67 31.23 0.24 -3.63 16 6 C 0.07 2.33 3.42 45.20 0.15 2.48 16 7 H 0.03 1.25 8.13 -2.39 -0.02 1.23 16 8 N -0.65 -23.13 4.91 -471.80 -2.32 -25.45 16 9 C 0.14 5.95 2.35 44.17 0.10 6.05 16 10 H 0.05 2.21 7.45 -2.39 -0.02 2.19 16 11 C 0.03 1.38 4.29 29.85 0.13 1.50 16 12 C -0.52 -29.83 8.60 25.60 0.22 -29.61 16 13 H 0.06 3.36 6.57 -2.91 -0.02 3.34 16 14 C 0.00 0.26 5.46 84.65 0.46 0.72 16 15 N -0.93 -57.37 13.28 21.45 0.28 -57.08 16 16 Si 0.95 45.37 29.54 68.60 2.03 47.40 16 17 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 18 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 20 C -0.04 -1.71 4.50 -19.87 -0.09 -1.80 16 21 C -0.11 -4.02 9.33 22.27 0.21 -3.82 16 22 C -0.13 -3.99 10.05 22.27 0.22 -3.77 16 23 C -0.14 -3.99 10.05 22.27 0.22 -3.77 16 24 C -0.13 -4.13 10.05 22.27 0.22 -3.91 16 25 C -0.13 -5.06 8.71 22.27 0.19 -4.87 16 26 C -0.09 -2.41 0.97 -52.32 -0.05 -2.47 16 27 C -0.09 -1.99 7.43 30.88 0.23 -1.76 16 28 C -0.13 -2.45 8.08 31.23 0.25 -2.20 16 29 C -0.13 -3.32 7.71 30.89 0.24 -3.08 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.33 12.20 7.77 -89.70 -0.70 11.50 16 36 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 37 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 38 H 0.26 15.26 8.31 -92.71 -0.77 14.48 16 39 H 0.12 4.10 7.71 -2.91 -0.02 4.08 16 40 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 41 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 42 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 43 H 0.11 4.04 7.83 -2.91 -0.02 4.01 16 44 H 0.08 2.02 7.40 -2.39 -0.02 2.00 16 45 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.07 1.71 7.83 -2.39 -0.02 1.69 16 49 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -66.80 393.57 3.01 -63.79 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: 0.21 Total: 32.75 kcal Atomic # 6 Polarization: -54.07 SS G_CDS: 4.32 Total: -49.75 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -2.03 Total: -82.53 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -1.52 Total: -11.66 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -66.80 3.01 -63.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453171568.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.989 kcal (2) G-P(sol) polarization free energy of solvation -66.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds