Wall clock time and date at job start Tue Mar 31 2020 12:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00512 * 2 1 4 4 H 1.08997 * 112.95059 * 21.89959 * 3 2 1 5 5 C 1.53951 * 113.66138 * 250.49494 * 3 2 1 6 6 C 1.53948 * 87.29394 * 270.25939 * 5 3 2 7 7 H 1.09002 * 113.66328 * 89.83658 * 6 5 3 8 8 N 1.46903 * 113.66013 * 220.79495 * 6 5 3 9 9 C 1.46904 * 110.99601 * 255.49660 * 8 6 5 10 10 H 1.08994 * 109.47428 * 34.99809 * 9 8 6 11 11 C 1.53002 * 109.46948 * 155.00262 * 9 8 6 12 12 C 1.50699 * 109.47118 * 294.99816 * 11 9 8 13 13 H 1.07999 * 119.99741 * 359.97438 * 12 11 9 14 14 C 1.37879 * 120.00221 * 180.02562 * 12 11 9 15 15 N 1.31518 * 119.99857 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99874 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47583 * 89.99855 * 16 14 12 18 18 H 1.48505 * 109.47089 * 209.99764 * 16 14 12 19 19 H 1.48496 * 109.47336 * 329.99399 * 16 14 12 20 20 C 1.50702 * 109.47179 * 274.99730 * 9 8 6 21 21 C 1.38234 * 119.99895 * 319.73180 * 20 9 8 22 22 C 1.38240 * 120.00062 * 180.32314 * 21 20 9 23 23 C 1.38234 * 119.99686 * 359.92348 * 22 21 20 24 24 C 1.38234 * 120.00244 * 0.07174 * 23 22 21 25 25 C 1.38230 * 119.99864 * 359.95693 * 24 23 22 26 26 C 1.52905 * 113.66506 * 153.30786 * 3 2 1 27 27 C 1.52915 * 121.13713 * 215.29066 * 26 3 2 28 28 C 1.53944 * 86.77966 * 100.81926 * 27 26 3 29 29 C 1.52910 * 121.13595 * 323.85042 * 26 3 2 30 30 H 1.09003 * 109.46704 * 59.99996 * 1 2 3 31 31 H 1.09000 * 109.47497 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47023 * 300.00272 * 1 2 3 33 33 H 1.08997 * 113.57928 * 155.65189 * 5 3 2 34 34 H 1.09003 * 113.64875 * 24.87350 * 5 3 2 35 35 H 1.00900 * 111.00290 * 19.44676 * 8 6 5 36 36 H 1.09003 * 109.47084 * 54.99784 * 11 9 8 37 37 H 1.09003 * 109.47373 * 174.99431 * 11 9 8 38 38 H 0.96996 * 119.99544 * 180.02562 * 15 14 12 39 39 H 1.08001 * 120.00279 * 0.27436 * 21 20 9 40 40 H 1.07997 * 119.99852 * 179.97438 * 22 21 20 41 41 H 1.07999 * 119.99747 * 180.02562 * 23 22 21 42 42 H 1.08002 * 119.99744 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.00356 * 179.97438 * 25 24 23 44 44 H 1.08997 * 113.65966 * 215.29262 * 27 26 3 45 45 H 1.09004 * 113.65805 * 346.34467 * 27 26 3 46 46 H 1.09000 * 113.58370 * 270.12852 * 28 27 26 47 47 H 1.09006 * 113.58006 * 139.33913 * 28 27 26 48 48 H 1.08997 * 113.66440 * 13.65580 * 29 26 3 49 49 H 1.08999 * 113.65864 * 144.61661 * 29 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3325 2.0725 0.3744 5 6 2.6918 1.6782 -1.3292 6 6 3.9820 1.0647 -0.7556 7 1 4.0936 0.0017 -0.9694 8 7 5.1912 1.8396 -1.0646 9 6 5.9783 1.1883 -2.1203 10 1 5.3057 0.7107 -2.8327 11 6 6.8270 2.2359 -2.8435 12 6 5.9240 3.2061 -3.5606 13 1 4.8519 3.0871 -3.5062 14 6 6.4663 4.2451 -4.2868 15 7 7.7718 4.3897 -4.3533 16 14 5.3469 5.4472 -5.1762 17 1 5.0182 6.5789 -4.2726 18 1 6.0366 5.9638 -6.3857 19 1 4.0961 4.7548 -5.5775 20 6 6.8798 0.1486 -1.5058 21 6 7.5226 0.4106 -0.3104 22 6 8.3548 -0.5405 0.2498 23 6 8.5428 -1.7541 -0.3846 24 6 7.8999 -2.0162 -1.5799 25 6 7.0683 -1.0649 -2.1404 26 6 3.4030 1.3570 0.6291 27 6 3.8610 2.5716 1.4373 28 6 3.5450 1.7440 2.6964 29 6 3.7588 0.4863 1.8347 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.7579 2.7529 -1.4988 34 1 2.2971 1.1379 -2.1896 35 1 4.9580 2.7874 -1.3201 36 1 7.4356 2.7748 -2.1173 37 1 7.4763 1.7417 -3.5662 38 1 8.1534 5.1208 -4.8640 39 1 7.3753 1.3587 0.1855 40 1 8.8573 -0.3355 1.1836 41 1 9.1926 -2.4973 0.0533 42 1 8.0473 -2.9643 -2.0757 43 1 6.5663 -1.2694 -3.0746 44 1 4.9199 2.8016 1.3193 45 1 3.2202 3.4449 1.3156 46 1 2.5206 1.8615 3.0497 47 1 4.2829 1.8592 3.4904 48 1 3.0365 -0.3061 2.0305 49 1 4.7885 0.1290 1.8276 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453171575.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:00 Heat of formation + Delta-G solvation = 19.115211 kcal Electronic energy + Delta-G solvation = -27374.272937 eV Core-core repulsion = 23881.326688 eV Total energy + Delta-G solvation = -3492.946249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -40.59698 -38.77003 -36.98560 -35.82163 -33.72893 -32.36203 -30.38860 -29.90032 -28.40592 -26.70534 -25.46471 -24.75202 -24.32785 -22.96221 -22.04969 -21.80501 -20.57933 -19.51646 -18.04537 -16.60292 -16.38833 -16.04395 -15.63672 -15.50781 -15.14443 -14.72031 -14.63776 -14.49616 -14.04065 -13.76081 -13.28125 -12.83785 -12.81876 -12.57248 -12.32768 -12.17025 -12.05578 -12.00221 -11.86390 -11.63223 -11.50265 -11.09323 -11.05477 -10.81197 -10.77150 -10.57804 -10.52709 -10.40438 -10.10247 -9.91929 -9.75926 -9.46966 -9.25684 -9.12388 -8.43819 -8.35965 -8.01132 -7.60972 -6.05347 -4.09102 1.92507 1.97909 3.26827 3.34345 3.36029 3.59764 4.34269 4.41815 4.68349 4.74420 4.78323 4.96554 5.01734 5.06651 5.22517 5.29159 5.29802 5.34879 5.38934 5.40991 5.47003 5.53912 5.58467 5.65258 5.74285 5.77813 5.86694 6.07491 6.08057 6.11882 6.13186 6.19156 6.22484 6.26546 6.36836 6.43805 6.50416 6.61538 6.64958 6.75541 6.78818 6.97697 7.03606 7.24440 7.29541 7.51700 7.59415 7.61431 7.93703 8.04797 8.26660 8.33096 8.96747 9.55142 11.05205 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.008259 B = 0.005718 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3389.620729 B = 4896.041203 C = 7030.931536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.365 6.365 3 C 0.086 3.914 4 H 0.069 0.931 5 C -0.187 4.187 6 C 0.097 3.903 7 H 0.092 0.908 8 N -0.665 5.665 9 C 0.128 3.872 10 H 0.040 0.960 11 C 0.029 3.971 12 C -0.523 4.523 13 H 0.053 0.947 14 C 0.063 3.937 15 N -0.888 5.888 16 Si 0.888 3.112 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.051 4.051 21 C -0.086 4.086 22 C -0.131 4.131 23 C -0.138 4.138 24 C -0.128 4.128 25 C -0.124 4.124 26 C -0.093 4.093 27 C -0.101 4.101 28 C -0.143 4.143 29 C -0.115 4.115 30 H 0.040 0.960 31 H 0.083 0.917 32 H 0.039 0.961 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.359 0.641 36 H 0.028 0.972 37 H 0.022 0.978 38 H 0.261 0.739 39 H 0.127 0.873 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.102 0.898 45 H 0.059 0.941 46 H 0.069 0.931 47 H 0.063 0.937 48 H 0.064 0.936 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.995 -8.501 11.508 16.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.028 3.972 4 H 0.087 0.913 5 C -0.226 4.226 6 C -0.014 4.014 7 H 0.110 0.890 8 N -0.297 5.297 9 C 0.018 3.982 10 H 0.058 0.942 11 C -0.008 4.008 12 C -0.562 4.562 13 H 0.072 0.928 14 C -0.139 4.139 15 N -0.527 5.527 16 Si 0.716 3.284 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.052 4.052 21 C -0.104 4.104 22 C -0.149 4.149 23 C -0.156 4.156 24 C -0.146 4.146 25 C -0.143 4.143 26 C -0.095 4.095 27 C -0.138 4.138 28 C -0.181 4.181 29 C -0.153 4.153 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.182 0.818 36 H 0.046 0.954 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.145 0.855 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.132 0.868 44 H 0.120 0.880 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.082 0.918 48 H 0.083 0.917 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.356 -8.803 11.917 17.010 hybrid contribution -1.353 1.059 -1.492 2.276 sum -9.709 -7.744 10.424 16.214 Atomic orbital electron populations 1.22765 0.81485 1.02425 0.99782 1.87872 1.19086 1.26751 1.94566 1.22709 0.93257 0.84479 0.96802 0.91334 1.24217 0.99460 1.01757 0.97211 1.22644 0.87475 0.97713 0.93617 0.88977 1.60286 1.18972 1.06342 1.44115 1.20632 0.93543 0.93932 0.90044 0.94198 1.19246 0.94800 0.91928 0.94858 1.21126 0.92736 1.11201 1.31113 0.92846 1.24966 0.94853 0.97679 0.96429 1.69966 1.10106 1.31384 1.41240 0.86658 0.80781 0.81505 0.79429 1.20615 1.21251 1.20023 1.20209 0.96720 0.93919 0.94308 1.21013 0.95019 0.99111 0.95266 1.21107 0.99512 0.94326 0.99931 1.20951 1.00968 0.97348 0.96378 1.20955 0.98291 0.98999 0.96330 1.21039 0.99595 0.93808 0.99833 1.22828 0.93589 0.98728 0.94312 1.22498 1.02704 0.94816 0.93790 1.22860 1.00743 0.97584 0.96886 1.22523 1.01677 0.96134 0.94919 0.94151 0.89832 0.94283 0.89070 0.91325 0.81845 0.95398 0.96003 0.92923 0.85494 0.87018 0.87221 0.87062 0.86827 0.87965 0.92247 0.91217 0.91843 0.91733 0.89829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.87 101.05 1.10 1.42 16 2 O -0.36 -4.94 10.20 -35.23 -0.36 -5.30 16 3 C 0.09 1.14 4.15 -26.28 -0.11 1.04 16 4 H 0.07 0.82 7.90 -51.93 -0.41 0.41 16 5 C -0.19 -2.79 7.55 -25.75 -0.19 -2.99 16 6 C 0.10 1.54 3.71 -67.27 -0.25 1.29 16 7 H 0.09 1.61 7.84 -51.93 -0.41 1.21 16 8 N -0.67 -11.84 4.87 -100.48 -0.49 -12.33 16 9 C 0.13 2.57 2.06 -68.86 -0.14 2.43 16 10 H 0.04 0.84 7.72 -51.93 -0.40 0.44 16 11 C 0.03 0.71 4.55 -27.88 -0.13 0.59 16 12 C -0.52 -13.79 8.12 -34.44 -0.28 -14.07 16 13 H 0.05 1.36 7.49 -52.49 -0.39 0.97 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 16 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 C -0.05 -0.95 4.76 -104.62 -0.50 -1.44 16 21 C -0.09 -1.51 9.33 -39.58 -0.37 -1.87 16 22 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 23 C -0.14 -2.03 10.05 -39.58 -0.40 -2.43 16 24 C -0.13 -1.96 10.05 -39.59 -0.40 -2.35 16 25 C -0.12 -2.15 9.67 -39.59 -0.38 -2.54 16 26 C -0.09 -1.28 0.98 -154.71 -0.15 -1.44 16 27 C -0.10 -1.30 7.44 -26.28 -0.20 -1.49 16 28 C -0.14 -1.65 8.08 -25.75 -0.21 -1.86 16 29 C -0.12 -1.51 7.71 -26.28 -0.20 -1.71 16 30 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 1.38 7.82 -51.93 -0.41 0.97 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.36 6.93 6.70 -39.29 -0.26 6.66 16 36 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.13 2.25 7.72 -52.49 -0.41 1.85 16 40 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 41 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 43 H 0.11 1.87 8.04 -52.49 -0.42 1.45 16 44 H 0.10 1.44 7.77 -51.93 -0.40 1.04 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.06 0.85 7.83 -51.93 -0.41 0.45 16 49 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 394.50 15.07 5.95 5.95 Total: -1.00 -28.41 394.50 -11.04 -39.44 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -8.55 Total: 9.70 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: -3.30 Total: -28.23 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.25 Total: -37.48 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.36 Total: -5.30 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -28.41 -11.04 -39.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453171575.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.559 kcal (2) G-P(sol) polarization free energy of solvation -28.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds