Wall clock time and date at job start Tue Mar 31 2020 12:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00512 * 2 1 4 4 H 1.08997 * 112.95059 * 21.89959 * 3 2 1 5 5 C 1.53951 * 113.66138 * 250.49494 * 3 2 1 6 6 C 1.53948 * 87.29394 * 270.25939 * 5 3 2 7 7 H 1.09002 * 113.66328 * 89.83658 * 6 5 3 8 8 N 1.46903 * 113.66013 * 220.79495 * 6 5 3 9 9 C 1.46904 * 110.99601 * 255.49660 * 8 6 5 10 10 H 1.08994 * 109.47428 * 34.99809 * 9 8 6 11 11 C 1.53002 * 109.46948 * 155.00262 * 9 8 6 12 12 C 1.50699 * 109.47118 * 294.99816 * 11 9 8 13 13 H 1.07999 * 119.99741 * 359.97438 * 12 11 9 14 14 C 1.37879 * 120.00221 * 180.02562 * 12 11 9 15 15 N 1.31518 * 119.99857 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99874 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47583 * 89.99855 * 16 14 12 18 18 H 1.48505 * 109.47089 * 209.99764 * 16 14 12 19 19 H 1.48496 * 109.47336 * 329.99399 * 16 14 12 20 20 C 1.50702 * 109.47179 * 274.99730 * 9 8 6 21 21 C 1.38234 * 119.99895 * 319.73180 * 20 9 8 22 22 C 1.38240 * 120.00062 * 180.32314 * 21 20 9 23 23 C 1.38234 * 119.99686 * 359.92348 * 22 21 20 24 24 C 1.38234 * 120.00244 * 0.07174 * 23 22 21 25 25 C 1.38230 * 119.99864 * 359.95693 * 24 23 22 26 26 C 1.52905 * 113.66506 * 153.30786 * 3 2 1 27 27 C 1.52915 * 121.13713 * 215.29066 * 26 3 2 28 28 C 1.53944 * 86.77966 * 100.81926 * 27 26 3 29 29 C 1.52910 * 121.13595 * 323.85042 * 26 3 2 30 30 H 1.09003 * 109.46704 * 59.99996 * 1 2 3 31 31 H 1.09000 * 109.47497 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47023 * 300.00272 * 1 2 3 33 33 H 1.08997 * 113.57928 * 155.65189 * 5 3 2 34 34 H 1.09003 * 113.64875 * 24.87350 * 5 3 2 35 35 H 1.00900 * 111.00290 * 19.44676 * 8 6 5 36 36 H 1.09003 * 109.47084 * 54.99784 * 11 9 8 37 37 H 1.09003 * 109.47373 * 174.99431 * 11 9 8 38 38 H 0.96996 * 119.99544 * 180.02562 * 15 14 12 39 39 H 1.08001 * 120.00279 * 0.27436 * 21 20 9 40 40 H 1.07997 * 119.99852 * 179.97438 * 22 21 20 41 41 H 1.07999 * 119.99747 * 180.02562 * 23 22 21 42 42 H 1.08002 * 119.99744 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.00356 * 179.97438 * 25 24 23 44 44 H 1.08997 * 113.65966 * 215.29262 * 27 26 3 45 45 H 1.09004 * 113.65805 * 346.34467 * 27 26 3 46 46 H 1.09000 * 113.58370 * 270.12852 * 28 27 26 47 47 H 1.09006 * 113.58006 * 139.33913 * 28 27 26 48 48 H 1.08997 * 113.66440 * 13.65580 * 29 26 3 49 49 H 1.08999 * 113.65864 * 144.61661 * 29 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3325 2.0725 0.3744 5 6 2.6918 1.6782 -1.3292 6 6 3.9820 1.0647 -0.7556 7 1 4.0936 0.0017 -0.9694 8 7 5.1912 1.8396 -1.0646 9 6 5.9783 1.1883 -2.1203 10 1 5.3057 0.7107 -2.8327 11 6 6.8270 2.2359 -2.8435 12 6 5.9240 3.2061 -3.5606 13 1 4.8519 3.0871 -3.5062 14 6 6.4663 4.2451 -4.2868 15 7 7.7718 4.3897 -4.3533 16 14 5.3469 5.4472 -5.1762 17 1 5.0182 6.5789 -4.2726 18 1 6.0366 5.9638 -6.3857 19 1 4.0961 4.7548 -5.5775 20 6 6.8798 0.1486 -1.5058 21 6 7.5226 0.4106 -0.3104 22 6 8.3548 -0.5405 0.2498 23 6 8.5428 -1.7541 -0.3846 24 6 7.8999 -2.0162 -1.5799 25 6 7.0683 -1.0649 -2.1404 26 6 3.4030 1.3570 0.6291 27 6 3.8610 2.5716 1.4373 28 6 3.5450 1.7440 2.6964 29 6 3.7588 0.4863 1.8347 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.7579 2.7529 -1.4988 34 1 2.2971 1.1379 -2.1896 35 1 4.9580 2.7874 -1.3201 36 1 7.4356 2.7748 -2.1173 37 1 7.4763 1.7417 -3.5662 38 1 8.1534 5.1208 -4.8640 39 1 7.3753 1.3587 0.1855 40 1 8.8573 -0.3355 1.1836 41 1 9.1926 -2.4973 0.0533 42 1 8.0473 -2.9643 -2.0757 43 1 6.5663 -1.2694 -3.0746 44 1 4.9199 2.8016 1.3193 45 1 3.2202 3.4449 1.3156 46 1 2.5206 1.8615 3.0497 47 1 4.2829 1.8592 3.4904 48 1 3.0365 -0.3061 2.0305 49 1 4.7885 0.1290 1.8276 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453171575.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:57 Heat of formation + Delta-G solvation = 5.292241 kcal Electronic energy + Delta-G solvation = -27374.872346 eV Core-core repulsion = 23881.326688 eV Total energy + Delta-G solvation = -3493.545658 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -41.74241 -40.10375 -37.98306 -37.26939 -35.23373 -34.15966 -31.68214 -31.20740 -30.24135 -27.60358 -26.56678 -26.41341 -25.44587 -24.20819 -23.66555 -23.18072 -21.70232 -21.03207 -19.15635 -18.56101 -17.53952 -17.40835 -16.85402 -16.58598 -16.52068 -16.35275 -15.94296 -15.67362 -15.23985 -15.04436 -14.63325 -14.38214 -14.08650 -13.86519 -13.75571 -13.62215 -13.37948 -13.21380 -13.13734 -12.96752 -12.77953 -12.66066 -12.50425 -12.44814 -12.17526 -12.03214 -11.83686 -11.73168 -11.50505 -11.29252 -11.11842 -10.95916 -10.74417 -10.56980 -10.29451 -9.66914 -9.40505 -9.06932 -8.18583 -6.29643 0.61211 0.67636 1.39407 1.39987 1.50115 2.39742 2.63625 3.03672 3.13238 3.41938 3.59274 3.65818 3.83087 3.96358 4.04029 4.06173 4.14320 4.24503 4.29577 4.31427 4.42091 4.52744 4.54823 4.57063 4.61130 4.71036 4.80836 4.81523 4.83866 4.87547 4.89927 4.92352 5.01714 5.07221 5.15742 5.18859 5.23509 5.27165 5.32111 5.45133 5.54708 5.57714 5.69041 5.71912 5.74455 5.82592 5.92565 6.18744 6.28764 6.30834 6.47275 6.70981 6.84738 7.39078 8.92739 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.008259 B = 0.005718 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3389.620729 B = 4896.041203 C = 7030.931536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.386 6.386 3 C 0.100 3.900 4 H 0.090 0.910 5 C -0.189 4.189 6 C 0.091 3.909 7 H 0.072 0.928 8 N -0.656 5.656 9 C 0.144 3.856 10 H 0.023 0.977 11 C 0.043 3.957 12 C -0.530 4.530 13 H 0.060 0.940 14 C 0.008 3.992 15 N -0.929 5.929 16 Si 0.958 3.042 17 H -0.270 1.270 18 H -0.287 1.287 19 H -0.267 1.267 20 C -0.076 4.076 21 C -0.100 4.100 22 C -0.130 4.130 23 C -0.132 4.132 24 C -0.126 4.126 25 C -0.143 4.143 26 C -0.092 4.092 27 C -0.102 4.102 28 C -0.127 4.127 29 C -0.115 4.115 30 H 0.043 0.957 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.348 0.652 36 H 0.000 1.000 37 H -0.014 1.014 38 H 0.262 0.738 39 H 0.116 0.884 40 H 0.139 0.861 41 H 0.147 0.853 42 H 0.141 0.859 43 H 0.112 0.888 44 H 0.085 0.915 45 H 0.069 0.931 46 H 0.086 0.914 47 H 0.072 0.928 48 H 0.065 0.935 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.424 -9.153 13.125 19.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.305 6.305 3 C 0.042 3.958 4 H 0.108 0.892 5 C -0.228 4.228 6 C -0.020 4.020 7 H 0.090 0.910 8 N -0.287 5.287 9 C 0.035 3.965 10 H 0.041 0.959 11 C 0.006 3.994 12 C -0.568 4.568 13 H 0.078 0.922 14 C -0.190 4.190 15 N -0.569 5.569 16 Si 0.784 3.216 17 H -0.195 1.195 18 H -0.212 1.212 19 H -0.191 1.191 20 C -0.077 4.077 21 C -0.119 4.119 22 C -0.148 4.148 23 C -0.150 4.150 24 C -0.144 4.144 25 C -0.162 4.162 26 C -0.094 4.094 27 C -0.139 4.139 28 C -0.164 4.164 29 C -0.152 4.152 30 H 0.062 0.938 31 H 0.116 0.884 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.169 0.831 36 H 0.018 0.982 37 H 0.004 0.996 38 H 0.071 0.929 39 H 0.134 0.866 40 H 0.157 0.843 41 H 0.165 0.835 42 H 0.159 0.841 43 H 0.130 0.870 44 H 0.103 0.897 45 H 0.088 0.912 46 H 0.105 0.895 47 H 0.091 0.909 48 H 0.084 0.916 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.808 -9.476 13.549 19.224 hybrid contribution -0.871 1.154 -1.997 2.466 sum -10.678 -8.321 11.552 17.797 Atomic orbital electron populations 1.22991 0.79520 1.03799 1.00768 1.87850 1.21291 1.26774 1.94548 1.22560 0.93270 0.85118 0.94894 0.89204 1.24199 0.99180 1.01333 0.98099 1.22647 0.86994 0.96323 0.95997 0.90967 1.60334 1.20005 1.05693 1.42685 1.20255 0.93098 0.92995 0.90201 0.95922 1.18994 0.94402 0.92448 0.93556 1.21445 0.93177 1.11352 1.30802 0.92227 1.25846 0.96219 0.99654 0.97317 1.70108 1.12096 1.32300 1.42373 0.85548 0.78849 0.79182 0.78063 1.19515 1.21238 1.19107 1.20124 0.97765 0.94322 0.95451 1.21017 0.96116 0.99549 0.95184 1.21429 0.98573 0.94043 1.00779 1.21394 1.00339 0.97556 0.95689 1.21311 0.97062 0.99466 0.96583 1.21194 1.00699 0.94155 1.00112 1.22861 0.93699 0.99670 0.93126 1.22469 1.01880 0.95032 0.94556 1.22801 1.01993 0.95413 0.96231 1.22477 1.00858 0.96793 0.95090 0.93790 0.88400 0.92602 0.89261 0.92298 0.83056 0.98179 0.99600 0.92881 0.86589 0.84318 0.83549 0.84134 0.87039 0.89672 0.91214 0.89508 0.90879 0.91648 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.87 113.37 1.23 1.67 16 2 O -0.39 -9.93 10.20 -148.98 -1.52 -11.45 16 3 C 0.10 2.53 4.15 30.88 0.13 2.66 16 4 H 0.09 1.91 7.90 -2.39 -0.02 1.89 16 5 C -0.19 -5.68 7.55 31.23 0.24 -5.44 16 6 C 0.09 3.00 3.71 45.20 0.17 3.17 16 7 H 0.07 2.67 7.84 -2.39 -0.02 2.65 16 8 N -0.66 -24.69 4.87 -471.81 -2.30 -26.99 16 9 C 0.14 6.20 2.06 44.17 0.09 6.29 16 10 H 0.02 1.03 7.72 -2.39 -0.02 1.01 16 11 C 0.04 2.29 4.55 29.85 0.14 2.42 16 12 C -0.53 -29.02 8.12 25.60 0.21 -28.81 16 13 H 0.06 3.12 7.49 -2.91 -0.02 3.10 16 14 C 0.01 0.45 5.46 84.65 0.46 0.92 16 15 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16 16 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 18 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 20 C -0.08 -2.97 4.76 -19.87 -0.09 -3.06 16 21 C -0.10 -3.62 9.33 22.27 0.21 -3.41 16 22 C -0.13 -3.86 10.05 22.27 0.22 -3.64 16 23 C -0.13 -3.55 10.05 22.27 0.22 -3.33 16 24 C -0.13 -3.69 10.05 22.27 0.22 -3.47 16 25 C -0.14 -5.09 9.67 22.27 0.22 -4.87 16 26 C -0.09 -2.49 0.98 -52.31 -0.05 -2.55 16 27 C -0.10 -2.52 7.44 30.88 0.23 -2.29 16 28 C -0.13 -2.65 8.08 31.23 0.25 -2.40 16 29 C -0.11 -2.89 7.71 30.88 0.24 -2.66 16 30 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.09 2.71 7.82 -2.39 -0.02 2.69 16 34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.35 14.15 6.70 -89.69 -0.60 13.55 16 36 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 37 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 38 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 39 H 0.12 4.34 7.72 -2.91 -0.02 4.32 16 40 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 41 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 42 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 43 H 0.11 3.87 8.04 -2.91 -0.02 3.85 16 44 H 0.08 2.42 7.77 -2.39 -0.02 2.40 16 45 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 46 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 48 H 0.06 1.63 7.83 -2.39 -0.02 1.62 16 49 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -63.89 394.50 3.13 -60.77 By element: Atomic # 1 Polarization: 36.29 SS G_CDS: 0.31 Total: 36.59 kcal Atomic # 6 Polarization: -53.13 SS G_CDS: 4.33 Total: -48.80 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -2.01 Total: -82.71 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -1.52 Total: -11.45 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -63.89 3.13 -60.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453171575.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.058 kcal (2) G-P(sol) polarization free energy of solvation -63.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds