Wall clock time and date at job start Tue Mar 31 2020 12:26:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42904 * 1
3 3 C 1.42895 * 114.00512 * 2 1
4 4 H 1.08997 * 112.95059 * 21.89959 * 3 2 1
5 5 C 1.53951 * 113.66138 * 250.49494 * 3 2 1
6 6 C 1.53948 * 87.29394 * 270.25939 * 5 3 2
7 7 H 1.09002 * 113.66328 * 89.83658 * 6 5 3
8 8 N 1.46903 * 113.66013 * 220.79495 * 6 5 3
9 9 C 1.46904 * 110.99601 * 255.49660 * 8 6 5
10 10 H 1.08994 * 109.47428 * 34.99809 * 9 8 6
11 11 C 1.53002 * 109.46948 * 155.00262 * 9 8 6
12 12 C 1.50699 * 109.47118 * 294.99816 * 11 9 8
13 13 H 1.07999 * 119.99741 * 359.97438 * 12 11 9
14 14 C 1.37879 * 120.00221 * 180.02562 * 12 11 9
15 15 N 1.31518 * 119.99857 * 359.97438 * 14 12 11
16 16 Si 1.86794 * 119.99874 * 179.97438 * 14 12 11
17 17 H 1.48498 * 109.47583 * 89.99855 * 16 14 12
18 18 H 1.48505 * 109.47089 * 209.99764 * 16 14 12
19 19 H 1.48496 * 109.47336 * 329.99399 * 16 14 12
20 20 C 1.50702 * 109.47179 * 274.99730 * 9 8 6
21 21 C 1.38234 * 119.99895 * 319.73180 * 20 9 8
22 22 C 1.38240 * 120.00062 * 180.32314 * 21 20 9
23 23 C 1.38234 * 119.99686 * 359.92348 * 22 21 20
24 24 C 1.38234 * 120.00244 * 0.07174 * 23 22 21
25 25 C 1.38230 * 119.99864 * 359.95693 * 24 23 22
26 26 C 1.52905 * 113.66506 * 153.30786 * 3 2 1
27 27 C 1.52915 * 121.13713 * 215.29066 * 26 3 2
28 28 C 1.53944 * 86.77966 * 100.81926 * 27 26 3
29 29 C 1.52910 * 121.13595 * 323.85042 * 26 3 2
30 30 H 1.09003 * 109.46704 * 59.99996 * 1 2 3
31 31 H 1.09000 * 109.47497 * 180.02562 * 1 2 3
32 32 H 1.08999 * 109.47023 * 300.00272 * 1 2 3
33 33 H 1.08997 * 113.57928 * 155.65189 * 5 3 2
34 34 H 1.09003 * 113.64875 * 24.87350 * 5 3 2
35 35 H 1.00900 * 111.00290 * 19.44676 * 8 6 5
36 36 H 1.09003 * 109.47084 * 54.99784 * 11 9 8
37 37 H 1.09003 * 109.47373 * 174.99431 * 11 9 8
38 38 H 0.96996 * 119.99544 * 180.02562 * 15 14 12
39 39 H 1.08001 * 120.00279 * 0.27436 * 21 20 9
40 40 H 1.07997 * 119.99852 * 179.97438 * 22 21 20
41 41 H 1.07999 * 119.99747 * 180.02562 * 23 22 21
42 42 H 1.08002 * 119.99744 * 179.97438 * 24 23 22
43 43 H 1.08000 * 120.00356 * 179.97438 * 25 24 23
44 44 H 1.08997 * 113.65966 * 215.29262 * 27 26 3
45 45 H 1.09004 * 113.65805 * 346.34467 * 27 26 3
46 46 H 1.09000 * 113.58370 * 270.12852 * 28 27 26
47 47 H 1.09006 * 113.58006 * 139.33913 * 28 27 26
48 48 H 1.08997 * 113.66440 * 13.65580 * 29 26 3
49 49 H 1.08999 * 113.65864 * 144.61661 * 29 26 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0104 1.3054 0.0000
4 1 1.3325 2.0725 0.3744
5 6 2.6918 1.6782 -1.3292
6 6 3.9820 1.0647 -0.7556
7 1 4.0936 0.0017 -0.9694
8 7 5.1912 1.8396 -1.0646
9 6 5.9783 1.1883 -2.1203
10 1 5.3057 0.7107 -2.8327
11 6 6.8270 2.2359 -2.8435
12 6 5.9240 3.2061 -3.5606
13 1 4.8519 3.0871 -3.5062
14 6 6.4663 4.2451 -4.2868
15 7 7.7718 4.3897 -4.3533
16 14 5.3469 5.4472 -5.1762
17 1 5.0182 6.5789 -4.2726
18 1 6.0366 5.9638 -6.3857
19 1 4.0961 4.7548 -5.5775
20 6 6.8798 0.1486 -1.5058
21 6 7.5226 0.4106 -0.3104
22 6 8.3548 -0.5405 0.2498
23 6 8.5428 -1.7541 -0.3846
24 6 7.8999 -2.0162 -1.5799
25 6 7.0683 -1.0649 -2.1404
26 6 3.4030 1.3570 0.6291
27 6 3.8610 2.5716 1.4373
28 6 3.5450 1.7440 2.6964
29 6 3.7588 0.4863 1.8347
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3634 -1.0276 0.0005
32 1 -0.3633 0.5139 0.8900
33 1 2.7579 2.7529 -1.4988
34 1 2.2971 1.1379 -2.1896
35 1 4.9580 2.7874 -1.3201
36 1 7.4356 2.7748 -2.1173
37 1 7.4763 1.7417 -3.5662
38 1 8.1534 5.1208 -4.8640
39 1 7.3753 1.3587 0.1855
40 1 8.8573 -0.3355 1.1836
41 1 9.1926 -2.4973 0.0533
42 1 8.0473 -2.9643 -2.0757
43 1 6.5663 -1.2694 -3.0746
44 1 4.9199 2.8016 1.3193
45 1 3.2202 3.4449 1.3156
46 1 2.5206 1.8615 3.0497
47 1 4.2829 1.8592 3.4904
48 1 3.0365 -0.3061 2.0305
49 1 4.7885 0.1290 1.8276
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000453171575.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:26:57
Heat of formation + Delta-G solvation = 5.292241 kcal
Electronic energy + Delta-G solvation = -27374.872346 eV
Core-core repulsion = 23881.326688 eV
Total energy + Delta-G solvation = -3493.545658 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 2.33 seconds
Orbital eigenvalues (eV)
-41.74241 -40.10375 -37.98306 -37.26939 -35.23373 -34.15966 -31.68214 -31.20740
-30.24135 -27.60358 -26.56678 -26.41341 -25.44587 -24.20819 -23.66555 -23.18072
-21.70232 -21.03207 -19.15635 -18.56101 -17.53952 -17.40835 -16.85402 -16.58598
-16.52068 -16.35275 -15.94296 -15.67362 -15.23985 -15.04436 -14.63325 -14.38214
-14.08650 -13.86519 -13.75571 -13.62215 -13.37948 -13.21380 -13.13734 -12.96752
-12.77953 -12.66066 -12.50425 -12.44814 -12.17526 -12.03214 -11.83686 -11.73168
-11.50505 -11.29252 -11.11842 -10.95916 -10.74417 -10.56980 -10.29451 -9.66914
-9.40505 -9.06932 -8.18583 -6.29643 0.61211 0.67636 1.39407 1.39987
1.50115 2.39742 2.63625 3.03672 3.13238 3.41938 3.59274 3.65818
3.83087 3.96358 4.04029 4.06173 4.14320 4.24503 4.29577 4.31427
4.42091 4.52744 4.54823 4.57063 4.61130 4.71036 4.80836 4.81523
4.83866 4.87547 4.89927 4.92352 5.01714 5.07221 5.15742 5.18859
5.23509 5.27165 5.32111 5.45133 5.54708 5.57714 5.69041 5.71912
5.74455 5.82592 5.92565 6.18744 6.28764 6.30834 6.47275 6.70981
6.84738 7.39078 8.92739
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.008259 B = 0.005718 C = 0.003981
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3389.620729 B = 4896.041203 C = 7030.931536
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.386 6.386
3 C 0.100 3.900
4 H 0.090 0.910
5 C -0.189 4.189
6 C 0.091 3.909
7 H 0.072 0.928
8 N -0.656 5.656
9 C 0.144 3.856
10 H 0.023 0.977
11 C 0.043 3.957
12 C -0.530 4.530
13 H 0.060 0.940
14 C 0.008 3.992
15 N -0.929 5.929
16 Si 0.958 3.042
17 H -0.270 1.270
18 H -0.287 1.287
19 H -0.267 1.267
20 C -0.076 4.076
21 C -0.100 4.100
22 C -0.130 4.130
23 C -0.132 4.132
24 C -0.126 4.126
25 C -0.143 4.143
26 C -0.092 4.092
27 C -0.102 4.102
28 C -0.127 4.127
29 C -0.115 4.115
30 H 0.043 0.957
31 H 0.098 0.902
32 H 0.055 0.945
33 H 0.089 0.911
34 H 0.058 0.942
35 H 0.348 0.652
36 H 0.000 1.000
37 H -0.014 1.014
38 H 0.262 0.738
39 H 0.116 0.884
40 H 0.139 0.861
41 H 0.147 0.853
42 H 0.141 0.859
43 H 0.112 0.888
44 H 0.085 0.915
45 H 0.069 0.931
46 H 0.086 0.914
47 H 0.072 0.928
48 H 0.065 0.935
49 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.424 -9.153 13.125 19.097
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.305 6.305
3 C 0.042 3.958
4 H 0.108 0.892
5 C -0.228 4.228
6 C -0.020 4.020
7 H 0.090 0.910
8 N -0.287 5.287
9 C 0.035 3.965
10 H 0.041 0.959
11 C 0.006 3.994
12 C -0.568 4.568
13 H 0.078 0.922
14 C -0.190 4.190
15 N -0.569 5.569
16 Si 0.784 3.216
17 H -0.195 1.195
18 H -0.212 1.212
19 H -0.191 1.191
20 C -0.077 4.077
21 C -0.119 4.119
22 C -0.148 4.148
23 C -0.150 4.150
24 C -0.144 4.144
25 C -0.162 4.162
26 C -0.094 4.094
27 C -0.139 4.139
28 C -0.164 4.164
29 C -0.152 4.152
30 H 0.062 0.938
31 H 0.116 0.884
32 H 0.074 0.926
33 H 0.107 0.893
34 H 0.077 0.923
35 H 0.169 0.831
36 H 0.018 0.982
37 H 0.004 0.996
38 H 0.071 0.929
39 H 0.134 0.866
40 H 0.157 0.843
41 H 0.165 0.835
42 H 0.159 0.841
43 H 0.130 0.870
44 H 0.103 0.897
45 H 0.088 0.912
46 H 0.105 0.895
47 H 0.091 0.909
48 H 0.084 0.916
49 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -9.808 -9.476 13.549 19.224
hybrid contribution -0.871 1.154 -1.997 2.466
sum -10.678 -8.321 11.552 17.797
Atomic orbital electron populations
1.22991 0.79520 1.03799 1.00768 1.87850 1.21291 1.26774 1.94548
1.22560 0.93270 0.85118 0.94894 0.89204 1.24199 0.99180 1.01333
0.98099 1.22647 0.86994 0.96323 0.95997 0.90967 1.60334 1.20005
1.05693 1.42685 1.20255 0.93098 0.92995 0.90201 0.95922 1.18994
0.94402 0.92448 0.93556 1.21445 0.93177 1.11352 1.30802 0.92227
1.25846 0.96219 0.99654 0.97317 1.70108 1.12096 1.32300 1.42373
0.85548 0.78849 0.79182 0.78063 1.19515 1.21238 1.19107 1.20124
0.97765 0.94322 0.95451 1.21017 0.96116 0.99549 0.95184 1.21429
0.98573 0.94043 1.00779 1.21394 1.00339 0.97556 0.95689 1.21311
0.97062 0.99466 0.96583 1.21194 1.00699 0.94155 1.00112 1.22861
0.93699 0.99670 0.93126 1.22469 1.01880 0.95032 0.94556 1.22801
1.01993 0.95413 0.96231 1.22477 1.00858 0.96793 0.95090 0.93790
0.88400 0.92602 0.89261 0.92298 0.83056 0.98179 0.99600 0.92881
0.86589 0.84318 0.83549 0.84134 0.87039 0.89672 0.91214 0.89508
0.90879 0.91648 0.91187
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.44 10.87 113.37 1.23 1.67 16
2 O -0.39 -9.93 10.20 -148.98 -1.52 -11.45 16
3 C 0.10 2.53 4.15 30.88 0.13 2.66 16
4 H 0.09 1.91 7.90 -2.39 -0.02 1.89 16
5 C -0.19 -5.68 7.55 31.23 0.24 -5.44 16
6 C 0.09 3.00 3.71 45.20 0.17 3.17 16
7 H 0.07 2.67 7.84 -2.39 -0.02 2.65 16
8 N -0.66 -24.69 4.87 -471.81 -2.30 -26.99 16
9 C 0.14 6.20 2.06 44.17 0.09 6.29 16
10 H 0.02 1.03 7.72 -2.39 -0.02 1.01 16
11 C 0.04 2.29 4.55 29.85 0.14 2.42 16
12 C -0.53 -29.02 8.12 25.60 0.21 -28.81 16
13 H 0.06 3.12 7.49 -2.91 -0.02 3.10 16
14 C 0.01 0.45 5.46 84.65 0.46 0.92 16
15 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16
16 Si 0.96 43.57 29.54 68.60 2.03 45.60 16
17 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16
18 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16
19 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16
20 C -0.08 -2.97 4.76 -19.87 -0.09 -3.06 16
21 C -0.10 -3.62 9.33 22.27 0.21 -3.41 16
22 C -0.13 -3.86 10.05 22.27 0.22 -3.64 16
23 C -0.13 -3.55 10.05 22.27 0.22 -3.33 16
24 C -0.13 -3.69 10.05 22.27 0.22 -3.47 16
25 C -0.14 -5.09 9.67 22.27 0.22 -4.87 16
26 C -0.09 -2.49 0.98 -52.31 -0.05 -2.55 16
27 C -0.10 -2.52 7.44 30.88 0.23 -2.29 16
28 C -0.13 -2.65 8.08 31.23 0.25 -2.40 16
29 C -0.11 -2.89 7.71 30.88 0.24 -2.66 16
30 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16
31 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16
32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16
33 H 0.09 2.71 7.82 -2.39 -0.02 2.69 16
34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16
35 H 0.35 14.15 6.70 -89.69 -0.60 13.55 16
36 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16
37 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16
38 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16
39 H 0.12 4.34 7.72 -2.91 -0.02 4.32 16
40 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16
41 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16
42 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16
43 H 0.11 3.87 8.04 -2.91 -0.02 3.85 16
44 H 0.08 2.42 7.77 -2.39 -0.02 2.40 16
45 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16
46 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16
47 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16
48 H 0.06 1.63 7.83 -2.39 -0.02 1.62 16
49 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16
Total: -1.00 -63.89 394.50 3.13 -60.77
By element:
Atomic # 1 Polarization: 36.29 SS G_CDS: 0.31 Total: 36.59 kcal
Atomic # 6 Polarization: -53.13 SS G_CDS: 4.33 Total: -48.80 kcal
Atomic # 7 Polarization: -80.69 SS G_CDS: -2.01 Total: -82.71 kcal
Atomic # 8 Polarization: -9.93 SS G_CDS: -1.52 Total: -11.45 kcal
Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal
Total: -63.89 3.13 -60.77 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000453171575.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 66.058 kcal
(2) G-P(sol) polarization free energy of solvation -63.894 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.164 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.128 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.766 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.292 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.33 seconds