Wall clock time and date at job start Tue Mar 31 2020 11:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46599 * 2 1 4 4 C 1.52996 * 109.47218 * 240.00005 * 2 1 3 5 5 C 1.53002 * 109.47174 * 176.64816 * 4 2 1 6 6 C 1.52997 * 109.47047 * 295.40310 * 5 4 2 7 7 C 1.53002 * 109.47047 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47093 * 59.99846 * 7 6 5 9 9 C 1.52992 * 109.46989 * 299.99949 * 8 7 6 10 10 C 1.53001 * 109.47392 * 60.00404 * 9 8 7 11 11 N 1.46500 * 109.46805 * 119.99907 * 2 1 3 12 12 C 1.34777 * 119.99813 * 274.99486 * 11 2 1 13 13 O 1.21593 * 119.99981 * 0.02562 * 12 11 2 14 14 C 1.47637 * 119.99988 * 180.02562 * 12 11 2 15 15 C 1.40015 * 119.89751 * 359.73010 * 14 12 11 16 16 C 1.36312 * 120.10503 * 179.75566 * 15 14 12 17 17 C 1.40888 * 119.89827 * 0.52004 * 16 15 14 18 18 C 1.41099 * 120.10787 * 179.71796 * 17 16 15 19 19 H 1.07998 * 120.00129 * 156.57913 * 18 17 16 20 20 C 1.40233 * 120.00089 * 336.57835 * 18 17 16 21 21 N 1.30651 * 119.99698 * 340.60722 * 20 18 17 22 22 Si 1.86793 * 120.00230 * 160.60892 * 20 18 17 23 23 H 1.48506 * 109.47293 * 94.74527 * 22 20 18 24 24 H 1.48501 * 109.47298 * 214.74131 * 22 20 18 25 25 H 1.48498 * 109.47280 * 334.74161 * 22 20 18 26 26 C 1.40889 * 119.78544 * 359.73312 * 17 16 15 27 27 C 1.36307 * 119.89601 * 0.02562 * 26 17 16 28 28 H 1.09000 * 109.47194 * 299.99854 * 1 2 3 29 29 H 1.08998 * 109.47092 * 60.00739 * 1 2 3 30 30 H 1.09007 * 109.46892 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47413 * 56.64715 * 4 2 1 32 32 H 1.09006 * 109.47015 * 296.64798 * 4 2 1 33 33 H 1.09004 * 109.46807 * 55.40059 * 5 4 2 34 34 H 1.09001 * 109.47400 * 59.99559 * 6 5 4 35 35 H 1.09002 * 109.46733 * 299.99930 * 6 5 4 36 36 H 1.09000 * 109.46571 * 179.97438 * 7 6 5 37 37 H 1.08995 * 109.46656 * 299.99613 * 7 6 5 38 38 H 1.08999 * 109.46784 * 59.99867 * 8 7 6 39 39 H 1.08999 * 109.46636 * 180.02562 * 8 7 6 40 40 H 1.09001 * 109.47670 * 299.99976 * 9 8 7 41 41 H 1.09001 * 109.47089 * 180.02562 * 9 8 7 42 42 H 1.09002 * 109.47272 * 180.02562 * 10 9 8 43 43 H 1.08993 * 109.47284 * 60.00016 * 10 9 8 44 44 H 0.96998 * 120.00504 * 95.00448 * 11 2 1 45 45 H 1.08003 * 119.94188 * 0.02562 * 15 14 12 46 46 H 1.08010 * 120.04872 * 180.23128 * 16 15 14 47 47 H 0.96999 * 120.00034 * 179.97438 * 21 20 18 48 48 H 1.08004 * 120.05078 * 179.97438 * 26 17 16 49 49 H 1.08005 * 119.94611 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5678 -0.6486 -1.2921 6 6 4.0048 0.8092 -1.4490 7 6 5.5325 0.8818 -1.4925 8 6 6.0483 0.0642 -2.6784 9 6 5.6113 -1.3935 -2.5214 10 6 4.0836 -1.4662 -2.4780 11 7 2.0183 -0.6906 1.1962 12 6 2.1471 -0.0182 2.3571 13 8 1.8576 1.1615 2.4117 14 6 2.6396 -0.7140 3.5625 15 6 2.9670 -2.0738 3.4986 16 6 3.4269 -2.7192 4.6076 17 6 3.5623 -2.0185 5.8224 18 6 4.0323 -2.6837 6.9746 19 1 4.4909 -2.1205 7.7739 20 6 3.9039 -4.0760 7.0819 21 7 3.0410 -4.7119 6.3348 22 14 4.9663 -5.0214 8.2929 23 1 4.2229 -5.2052 9.5653 24 1 5.3058 -6.3495 7.7218 25 1 6.2149 -4.2613 8.5544 26 6 3.2265 -0.6516 5.8831 27 6 2.7721 -0.0134 4.7676 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6285 -0.2433 -2.1382 32 1 1.7266 -1.7648 -1.2197 33 1 3.9768 -1.0529 -0.3661 34 1 3.6369 1.3918 -0.6044 35 1 3.5957 1.2135 -2.3749 36 1 5.8437 1.9203 -1.6047 37 1 5.9418 0.4774 -0.5668 38 1 5.6388 0.4687 -3.6040 39 1 7.1366 0.1156 -2.7091 40 1 6.0207 -1.7980 -1.5958 41 1 5.9791 -1.9761 -3.3661 42 1 3.7722 -2.5047 -2.3657 43 1 3.6741 -1.0618 -3.4036 44 1 2.2491 -1.6317 1.1527 45 1 2.8591 -2.6111 2.5679 46 1 3.6828 -3.7673 4.5564 47 1 2.9524 -5.6750 6.4087 48 1 3.3282 -0.1103 6.8122 49 1 2.5141 1.0343 4.8133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000470482607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:56 Heat of formation + Delta-G solvation = -67.489115 kcal Electronic energy + Delta-G solvation = -26348.327024 eV Core-core repulsion = 22851.625330 eV Total energy + Delta-G solvation = -3496.701695 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.60109 -38.54446 -37.15368 -35.45263 -33.86646 -32.19022 -30.87511 -30.62738 -29.51319 -29.35664 -26.18581 -25.82318 -22.96693 -22.39089 -21.57836 -20.98605 -20.22751 -19.85390 -19.41957 -17.51960 -16.74697 -15.85142 -15.60686 -15.34982 -14.50484 -14.39230 -14.19048 -14.04738 -13.98882 -13.78515 -13.27580 -13.05867 -12.95513 -12.76940 -12.37717 -12.24095 -12.19781 -12.02787 -11.88463 -11.73221 -11.35784 -11.30787 -11.24792 -11.15151 -10.97555 -10.93291 -10.85779 -10.62336 -10.46723 -10.06399 -10.05051 -9.87951 -9.55517 -9.31549 -8.89455 -8.51014 -7.70596 -7.53777 -7.04609 -4.58957 2.26413 2.90247 2.94291 3.00943 3.05300 3.73660 3.87466 3.90463 4.52218 4.58137 4.62582 4.69386 4.96269 5.07408 5.19607 5.25922 5.40468 5.46967 5.48923 5.49965 5.57106 5.61142 5.63375 5.68309 5.81353 5.86703 5.90834 5.95062 6.00529 6.07094 6.07731 6.12065 6.18013 6.22873 6.29199 6.33754 6.38669 6.46969 6.48632 6.77767 6.83067 7.01206 7.13652 7.15694 7.44592 7.68115 7.81678 7.87291 8.08115 8.31813 8.40694 8.63975 8.76836 9.15434 9.87298 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014043 B = 0.003145 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.363153 B = 8902.270441 C = 9778.014585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.086 0.914 4 C -0.121 4.121 5 C -0.088 4.088 6 C -0.115 4.115 7 C -0.121 4.121 8 C -0.118 4.118 9 C -0.120 4.120 10 C -0.113 4.113 11 N -0.734 5.734 12 C 0.573 3.427 13 O -0.577 6.577 14 C -0.285 4.285 15 C -0.061 4.061 16 C -0.181 4.181 17 C 0.129 3.871 18 C -0.443 4.443 19 H 0.084 0.916 20 C 0.076 3.924 21 N -0.770 5.770 22 Si 0.911 3.089 23 H -0.267 1.267 24 H -0.272 1.272 25 H -0.257 1.257 26 C -0.240 4.240 27 C -0.022 4.022 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.395 0.605 45 H 0.088 0.912 46 H 0.119 0.881 47 H 0.286 0.714 48 H 0.097 0.903 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.973 1.500 -15.296 15.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.104 0.896 4 C -0.159 4.159 5 C -0.107 4.107 6 C -0.152 4.152 7 C -0.158 4.158 8 C -0.155 4.155 9 C -0.158 4.158 10 C -0.150 4.150 11 N -0.387 5.387 12 C 0.367 3.633 13 O -0.459 6.459 14 C -0.289 4.289 15 C -0.081 4.081 16 C -0.200 4.200 17 C 0.125 3.875 18 C -0.471 4.471 19 H 0.103 0.897 20 C -0.146 4.146 21 N -0.393 5.393 22 Si 0.735 3.265 23 H -0.192 1.192 24 H -0.197 1.197 25 H -0.181 1.181 26 C -0.260 4.260 27 C -0.041 4.041 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.230 0.770 45 H 0.106 0.894 46 H 0.137 0.863 47 H 0.097 0.903 48 H 0.115 0.885 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.654 2.095 -15.321 15.552 hybrid contribution 0.390 -1.083 0.505 1.257 sum 2.044 1.012 -14.816 14.991 Atomic orbital electron populations 1.22190 0.96143 1.01764 1.02035 1.20850 0.93348 0.97731 0.84343 0.89627 1.21938 0.95571 1.00951 0.97468 1.21171 0.94689 0.95855 0.98953 1.21615 0.95468 0.96388 1.01747 1.21529 0.96024 0.99639 0.98616 1.21524 1.00030 0.95517 0.98452 1.21532 0.96017 0.96532 1.01714 1.21576 0.95422 0.99763 0.98250 1.45977 1.69399 1.13825 1.09495 1.18555 0.75768 0.85991 0.82939 1.90622 1.53182 1.16570 1.85552 1.18927 1.21424 0.94836 0.93743 1.20458 0.97763 0.92833 0.97015 1.20968 1.06756 1.00383 0.91891 1.17766 0.86017 0.91103 0.92586 1.19844 1.32538 0.91716 1.02966 0.89742 1.26101 0.93829 0.98375 0.96292 1.69757 1.25314 1.10923 1.33293 0.86237 0.81100 0.78944 0.80261 1.19238 1.19722 1.18057 1.20698 1.11739 0.96244 0.97308 1.20356 0.94437 0.97634 0.91679 0.92018 0.92410 0.92790 0.90918 0.91564 0.90548 0.91458 0.92384 0.92310 0.91835 0.92339 0.92411 0.91870 0.92390 0.92143 0.92272 0.77007 0.89438 0.86280 0.90257 0.88485 0.88206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.48 37.16 0.35 -1.78 16 2 C 0.14 1.95 2.42 -67.93 -0.16 1.79 16 3 H 0.09 1.33 5.83 -51.93 -0.30 1.02 16 4 C -0.12 -1.28 4.24 -26.73 -0.11 -1.39 16 5 C -0.09 -0.96 2.13 -90.62 -0.19 -1.15 16 6 C -0.11 -1.28 4.95 -26.73 -0.13 -1.41 16 7 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 8 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 9 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 10 C -0.11 -1.05 5.20 -26.73 -0.14 -1.19 16 11 N -0.73 -12.02 4.34 -54.81 -0.24 -12.25 16 12 C 0.57 12.04 7.73 -12.42 -0.10 11.95 16 13 O -0.58 -13.60 15.99 5.28 0.08 -13.51 16 14 C -0.28 -6.50 5.89 -104.73 -0.62 -7.12 16 15 C -0.06 -1.36 9.47 -39.61 -0.38 -1.73 16 16 C -0.18 -4.42 8.65 -39.27 -0.34 -4.76 16 17 C 0.13 3.28 5.58 -106.81 -0.60 2.68 16 18 C -0.44 -11.04 9.04 -37.75 -0.34 -11.38 16 19 H 0.08 2.01 7.92 -52.49 -0.42 1.60 16 20 C 0.08 1.76 5.11 -17.30 -0.09 1.67 16 21 N -0.77 -18.39 10.96 55.56 0.61 -17.78 16 22 Si 0.91 17.21 29.60 -169.99 -5.03 12.18 16 23 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 24 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 25 H -0.26 -4.85 7.11 56.52 0.40 -4.44 16 26 C -0.24 -5.86 9.73 -39.27 -0.38 -6.24 16 27 C -0.02 -0.52 9.52 -39.61 -0.38 -0.90 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.98 7.55 -51.93 -0.39 0.59 16 34 H 0.07 0.89 6.48 -51.93 -0.34 0.55 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.39 5.91 6.57 -40.82 -0.27 5.65 16 45 H 0.09 1.64 6.37 -52.48 -0.33 1.31 16 46 H 0.12 2.95 6.12 -52.48 -0.32 2.63 16 47 H 0.29 6.13 8.29 -40.82 -0.34 5.80 16 48 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 49 H 0.10 2.30 7.63 -52.48 -0.40 1.90 16 LS Contribution 383.95 15.07 5.79 5.79 Total: -1.00 -27.45 383.95 -11.11 -38.57 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -8.25 Total: 11.97 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: -4.08 Total: -24.95 kcal Atomic # 7 Polarization: -30.41 SS G_CDS: 0.37 Total: -30.04 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.08 Total: -13.51 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.03 Total: 12.18 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -27.45 -11.11 -38.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000470482607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.922 kcal (2) G-P(sol) polarization free energy of solvation -27.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds