Wall clock time and date at job start Tue Mar 31 2020 11:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46599 * 2 1 4 4 C 1.52996 * 109.47218 * 240.00005 * 2 1 3 5 5 C 1.53002 * 109.47174 * 176.64816 * 4 2 1 6 6 C 1.52997 * 109.47047 * 295.40310 * 5 4 2 7 7 C 1.53002 * 109.47047 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47093 * 59.99846 * 7 6 5 9 9 C 1.52992 * 109.46989 * 299.99949 * 8 7 6 10 10 C 1.53001 * 109.47392 * 60.00404 * 9 8 7 11 11 N 1.46500 * 109.46805 * 119.99907 * 2 1 3 12 12 C 1.34777 * 119.99813 * 274.99486 * 11 2 1 13 13 O 1.21593 * 119.99981 * 0.02562 * 12 11 2 14 14 C 1.47637 * 119.99988 * 180.02562 * 12 11 2 15 15 C 1.40015 * 119.89751 * 359.73010 * 14 12 11 16 16 C 1.36312 * 120.10503 * 179.75566 * 15 14 12 17 17 C 1.40888 * 119.89827 * 0.52004 * 16 15 14 18 18 C 1.41099 * 120.10787 * 179.71796 * 17 16 15 19 19 H 1.07998 * 120.00129 * 156.57913 * 18 17 16 20 20 C 1.40233 * 120.00089 * 336.57835 * 18 17 16 21 21 N 1.30651 * 119.99698 * 340.60722 * 20 18 17 22 22 Si 1.86793 * 120.00230 * 160.60892 * 20 18 17 23 23 H 1.48506 * 109.47293 * 94.74527 * 22 20 18 24 24 H 1.48501 * 109.47298 * 214.74131 * 22 20 18 25 25 H 1.48498 * 109.47280 * 334.74161 * 22 20 18 26 26 C 1.40889 * 119.78544 * 359.73312 * 17 16 15 27 27 C 1.36307 * 119.89601 * 0.02562 * 26 17 16 28 28 H 1.09000 * 109.47194 * 299.99854 * 1 2 3 29 29 H 1.08998 * 109.47092 * 60.00739 * 1 2 3 30 30 H 1.09007 * 109.46892 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47413 * 56.64715 * 4 2 1 32 32 H 1.09006 * 109.47015 * 296.64798 * 4 2 1 33 33 H 1.09004 * 109.46807 * 55.40059 * 5 4 2 34 34 H 1.09001 * 109.47400 * 59.99559 * 6 5 4 35 35 H 1.09002 * 109.46733 * 299.99930 * 6 5 4 36 36 H 1.09000 * 109.46571 * 179.97438 * 7 6 5 37 37 H 1.08995 * 109.46656 * 299.99613 * 7 6 5 38 38 H 1.08999 * 109.46784 * 59.99867 * 8 7 6 39 39 H 1.08999 * 109.46636 * 180.02562 * 8 7 6 40 40 H 1.09001 * 109.47670 * 299.99976 * 9 8 7 41 41 H 1.09001 * 109.47089 * 180.02562 * 9 8 7 42 42 H 1.09002 * 109.47272 * 180.02562 * 10 9 8 43 43 H 1.08993 * 109.47284 * 60.00016 * 10 9 8 44 44 H 0.96998 * 120.00504 * 95.00448 * 11 2 1 45 45 H 1.08003 * 119.94188 * 0.02562 * 15 14 12 46 46 H 1.08010 * 120.04872 * 180.23128 * 16 15 14 47 47 H 0.96999 * 120.00034 * 179.97438 * 21 20 18 48 48 H 1.08004 * 120.05078 * 179.97438 * 26 17 16 49 49 H 1.08005 * 119.94611 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5678 -0.6486 -1.2921 6 6 4.0048 0.8092 -1.4490 7 6 5.5325 0.8818 -1.4925 8 6 6.0483 0.0642 -2.6784 9 6 5.6113 -1.3935 -2.5214 10 6 4.0836 -1.4662 -2.4780 11 7 2.0183 -0.6906 1.1962 12 6 2.1471 -0.0182 2.3571 13 8 1.8576 1.1615 2.4117 14 6 2.6396 -0.7140 3.5625 15 6 2.9670 -2.0738 3.4986 16 6 3.4269 -2.7192 4.6076 17 6 3.5623 -2.0185 5.8224 18 6 4.0323 -2.6837 6.9746 19 1 4.4909 -2.1205 7.7739 20 6 3.9039 -4.0760 7.0819 21 7 3.0410 -4.7119 6.3348 22 14 4.9663 -5.0214 8.2929 23 1 4.2229 -5.2052 9.5653 24 1 5.3058 -6.3495 7.7218 25 1 6.2149 -4.2613 8.5544 26 6 3.2265 -0.6516 5.8831 27 6 2.7721 -0.0134 4.7676 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6285 -0.2433 -2.1382 32 1 1.7266 -1.7648 -1.2197 33 1 3.9768 -1.0529 -0.3661 34 1 3.6369 1.3918 -0.6044 35 1 3.5957 1.2135 -2.3749 36 1 5.8437 1.9203 -1.6047 37 1 5.9418 0.4774 -0.5668 38 1 5.6388 0.4687 -3.6040 39 1 7.1366 0.1156 -2.7091 40 1 6.0207 -1.7980 -1.5958 41 1 5.9791 -1.9761 -3.3661 42 1 3.7722 -2.5047 -2.3657 43 1 3.6741 -1.0618 -3.4036 44 1 2.2491 -1.6317 1.1527 45 1 2.8591 -2.6111 2.5679 46 1 3.6828 -3.7673 4.5564 47 1 2.9524 -5.6750 6.4087 48 1 3.3282 -0.1103 6.8122 49 1 2.5141 1.0343 4.8133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000470482607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:52 Heat of formation + Delta-G solvation = -79.127867 kcal Electronic energy + Delta-G solvation = -26348.831719 eV Core-core repulsion = 22851.625330 eV Total energy + Delta-G solvation = -3497.206389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -40.99887 -39.72622 -38.84745 -36.74037 -35.67346 -33.45102 -32.12733 -31.59172 -31.30421 -30.87346 -27.67563 -27.02296 -24.20101 -23.59758 -22.87486 -22.57234 -21.43500 -21.18690 -20.48061 -19.36826 -18.36928 -17.37921 -16.91727 -16.45823 -15.79063 -15.75490 -15.47394 -15.43555 -15.04228 -14.99314 -14.91022 -14.48941 -14.15443 -14.02649 -13.86103 -13.69783 -13.31077 -13.23035 -13.05426 -13.01584 -12.83586 -12.65351 -12.60533 -12.37792 -12.27077 -11.96917 -11.86233 -11.78794 -11.75352 -11.37608 -11.30019 -11.09741 -10.87490 -10.74145 -10.62455 -9.96944 -9.57163 -9.40705 -8.80869 -6.47790 0.46644 1.15030 1.38090 1.42304 1.54701 2.13678 2.19273 2.47904 2.79851 3.63800 3.70003 3.79777 3.87914 4.06220 4.22162 4.25475 4.31370 4.32441 4.41406 4.45124 4.50679 4.61866 4.65500 4.66655 4.68482 4.79288 4.84340 4.89206 4.92793 4.97496 5.02721 5.07860 5.14789 5.17236 5.20565 5.27742 5.30417 5.32679 5.35654 5.38565 5.43979 5.53035 5.58037 5.65013 5.75218 5.84204 5.95819 5.99748 6.22650 6.53707 6.76461 6.78595 6.89782 7.52249 8.14506 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014043 B = 0.003145 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.363153 B = 8902.270441 C = 9778.014585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.138 3.862 3 H 0.066 0.934 4 C -0.111 4.111 5 C -0.087 4.087 6 C -0.113 4.113 7 C -0.123 4.123 8 C -0.114 4.114 9 C -0.122 4.122 10 C -0.107 4.107 11 N -0.716 5.716 12 C 0.572 3.428 13 O -0.607 6.607 14 C -0.295 4.295 15 C -0.052 4.052 16 C -0.200 4.200 17 C 0.102 3.898 18 C -0.475 4.475 19 H 0.084 0.916 20 C 0.040 3.960 21 N -0.795 5.795 22 Si 0.986 3.014 23 H -0.261 1.261 24 H -0.260 1.260 25 H -0.258 1.258 26 C -0.255 4.255 27 C -0.034 4.034 28 H 0.028 0.972 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.052 0.948 34 H 0.039 0.961 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.404 0.596 45 H 0.122 0.878 46 H 0.114 0.886 47 H 0.298 0.702 48 H 0.102 0.898 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.039 -0.098 -17.481 17.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.034 3.966 3 H 0.084 0.916 4 C -0.148 4.148 5 C -0.106 4.106 6 C -0.150 4.150 7 C -0.160 4.160 8 C -0.151 4.151 9 C -0.160 4.160 10 C -0.145 4.145 11 N -0.368 5.368 12 C 0.366 3.634 13 O -0.492 6.492 14 C -0.299 4.299 15 C -0.071 4.071 16 C -0.219 4.219 17 C 0.099 3.901 18 C -0.502 4.502 19 H 0.102 0.898 20 C -0.180 4.180 21 N -0.419 5.419 22 Si 0.806 3.194 23 H -0.186 1.186 24 H -0.184 1.184 25 H -0.181 1.181 26 C -0.275 4.275 27 C -0.053 4.053 28 H 0.048 0.952 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.240 0.760 45 H 0.139 0.861 46 H 0.132 0.868 47 H 0.109 0.891 48 H 0.120 0.880 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.706 0.482 -17.547 17.637 hybrid contribution 0.326 -0.523 1.119 1.278 sum 2.032 -0.041 -16.428 16.554 Atomic orbital electron populations 1.22150 0.95222 1.02455 1.01849 1.21080 0.94012 0.97040 0.84448 0.91569 1.21900 0.95119 1.01555 0.96274 1.21140 0.94975 0.95672 0.98799 1.21584 0.95674 0.96453 1.01311 1.21537 0.95861 1.00085 0.98539 1.21502 1.00374 0.95265 0.97983 1.21552 0.96186 0.96594 1.01624 1.21541 0.95249 0.99850 0.97836 1.45860 1.67807 1.14078 1.09023 1.18351 0.75752 0.85577 0.83746 1.90603 1.54637 1.17800 1.86173 1.19235 1.21004 0.95334 0.94336 1.20698 0.96088 0.92547 0.97768 1.21006 1.08197 1.00292 0.92405 1.18110 0.86777 0.91704 0.93557 1.20113 1.33714 0.93182 1.03173 0.89763 1.26923 0.94526 0.98474 0.98053 1.69768 1.25923 1.11876 1.34294 0.85125 0.78896 0.77598 0.77816 1.18560 1.18437 1.18146 1.20832 1.12436 0.96367 0.97854 1.20496 0.94712 0.97825 0.92262 0.95230 0.89603 0.91598 0.88474 0.90067 0.92990 0.94260 0.90717 0.92059 0.93960 0.91054 0.91961 0.93338 0.90871 0.91429 0.90753 0.75972 0.86051 0.86823 0.89121 0.87983 0.88219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 9.48 71.98 0.68 -3.19 16 2 C 0.14 3.62 2.42 44.99 0.11 3.73 16 3 H 0.07 2.05 5.83 -2.39 -0.01 2.03 16 4 C -0.11 -2.01 4.24 30.59 0.13 -1.88 16 5 C -0.09 -1.74 2.13 -10.79 -0.02 -1.76 16 6 C -0.11 -2.41 4.95 30.59 0.15 -2.26 16 7 C -0.12 -2.57 5.92 30.60 0.18 -2.39 16 8 C -0.11 -1.89 5.92 30.59 0.18 -1.71 16 9 C -0.12 -2.01 5.92 30.59 0.18 -1.83 16 10 C -0.11 -1.68 5.20 30.60 0.16 -1.52 16 11 N -0.72 -22.98 4.34 -445.59 -1.93 -24.91 16 12 C 0.57 24.39 7.73 86.73 0.67 25.06 16 13 O -0.61 -29.40 15.99 -4.01 -0.06 -29.46 16 14 C -0.29 -13.70 5.89 -19.93 -0.12 -13.81 16 15 C -0.05 -2.31 9.47 22.25 0.21 -2.10 16 16 C -0.20 -9.95 8.65 22.47 0.19 -9.76 16 17 C 0.10 5.35 5.58 -21.28 -0.12 5.23 16 18 C -0.47 -24.23 9.04 23.46 0.21 -24.02 16 19 H 0.08 4.14 7.92 -2.91 -0.02 4.11 16 20 C 0.04 1.85 5.11 85.35 0.44 2.28 16 21 N -0.80 -37.99 10.96 21.87 0.24 -37.75 16 22 Si 0.99 34.79 29.60 68.60 2.03 36.82 16 23 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 24 H -0.26 -8.61 7.11 99.48 0.71 -7.91 16 25 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 26 C -0.26 -12.95 9.73 22.47 0.22 -12.74 16 27 C -0.03 -1.66 9.52 22.25 0.21 -1.45 16 28 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.05 1.29 7.55 -2.38 -0.02 1.27 16 34 H 0.04 1.05 6.48 -2.39 -0.02 1.04 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 41 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.40 11.48 6.57 -92.71 -0.61 10.87 16 45 H 0.12 4.41 6.37 -2.91 -0.02 4.39 16 46 H 0.11 5.72 6.12 -2.91 -0.02 5.70 16 47 H 0.30 12.56 8.29 -92.71 -0.77 11.79 16 48 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 49 H 0.10 4.81 7.63 -2.91 -0.02 4.79 16 Total: -1.00 -61.41 383.95 4.26 -57.15 By element: Atomic # 1 Polarization: 41.95 SS G_CDS: 0.32 Total: 42.27 kcal Atomic # 6 Polarization: -47.79 SS G_CDS: 3.67 Total: -44.12 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: -1.69 Total: -62.66 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -0.06 Total: -29.46 kcal Atomic # 14 Polarization: 34.79 SS G_CDS: 2.03 Total: 36.82 kcal Total: -61.41 4.26 -57.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000470482607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.982 kcal (2) G-P(sol) polarization free energy of solvation -61.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds