Wall clock time and date at job start Tue Mar 31 2020 11:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46991 * 2 1 4 4 C 1.53003 * 109.47079 * 119.99697 * 2 1 3 5 5 C 1.52996 * 109.47439 * 182.60259 * 4 2 1 6 6 C 1.52997 * 109.47318 * 185.69113 * 5 4 2 7 7 C 1.52996 * 109.47318 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47371 * 59.99877 * 7 6 5 9 9 C 1.53001 * 109.47314 * 300.00433 * 8 7 6 10 10 C 1.52999 * 109.47018 * 65.68961 * 5 4 2 11 11 N 1.46499 * 109.47393 * 239.99601 * 2 1 3 12 12 C 1.34778 * 119.99866 * 85.00016 * 11 2 1 13 13 O 1.21586 * 120.00024 * 0.02562 * 12 11 2 14 14 C 1.47645 * 119.99740 * 180.02562 * 12 11 2 15 15 C 1.40010 * 119.89047 * 180.02562 * 14 12 11 16 16 C 1.36324 * 120.10070 * 180.22894 * 15 14 12 17 17 C 1.40886 * 119.89420 * 359.52134 * 16 15 14 18 18 C 1.41105 * 120.10376 * 180.23016 * 17 16 15 19 19 H 1.08000 * 119.99792 * 209.10687 * 18 17 16 20 20 C 1.40225 * 120.00072 * 29.10874 * 18 17 16 21 21 N 1.30645 * 119.99961 * 10.24208 * 20 18 17 22 22 Si 1.86801 * 120.00009 * 190.24467 * 20 18 17 23 23 H 1.48508 * 109.46912 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47131 * 119.99430 * 22 20 18 25 25 H 1.48493 * 109.47183 * 240.00093 * 22 20 18 26 26 C 1.40891 * 119.79353 * 0.47651 * 17 16 15 27 27 C 1.36322 * 119.88899 * 359.75457 * 26 17 16 28 28 H 1.09003 * 109.47248 * 300.00741 * 1 2 3 29 29 H 1.08996 * 109.46834 * 60.00022 * 1 2 3 30 30 H 1.08994 * 109.47183 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.47026 * 302.60210 * 4 2 1 32 32 H 1.09003 * 109.47187 * 62.59894 * 4 2 1 33 33 H 1.09001 * 109.47159 * 305.69270 * 5 4 2 34 34 H 1.09001 * 109.47134 * 300.00172 * 6 5 4 35 35 H 1.09003 * 109.46818 * 60.00015 * 6 5 4 36 36 H 1.09001 * 109.47159 * 300.00157 * 7 6 5 37 37 H 1.09003 * 109.47570 * 180.02562 * 7 6 5 38 38 H 1.08992 * 109.47478 * 180.02562 * 8 7 6 39 39 H 1.09001 * 109.46751 * 60.00030 * 8 7 6 40 40 H 1.08999 * 109.47152 * 299.99969 * 9 8 7 41 41 H 1.08990 * 109.47329 * 179.97438 * 9 8 7 42 42 H 1.08999 * 109.47442 * 300.00089 * 10 5 4 43 43 H 1.08999 * 109.47139 * 60.00627 * 10 5 4 44 44 H 0.96999 * 120.00010 * 265.00422 * 11 2 1 45 45 H 1.07992 * 119.95330 * 359.95252 * 15 14 12 46 46 H 1.07996 * 120.04886 * 179.74611 * 16 15 14 47 47 H 0.96996 * 119.99822 * 180.02562 * 21 20 18 48 48 H 1.07994 * 120.05923 * 179.72992 * 26 17 16 49 49 H 1.07998 * 119.94675 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5686 -0.6648 1.2826 6 6 4.0846 -1.5050 2.4524 7 6 5.6132 -1.4491 2.4853 8 6 6.0669 0.0016 2.6601 9 6 5.5508 0.8419 1.4903 10 6 4.0216 0.7861 1.4577 11 7 2.0184 -0.6907 -1.1961 12 6 2.1471 -0.0184 -2.3571 13 8 1.8584 1.1614 -2.4117 14 6 2.6388 -0.7146 -3.5627 15 6 2.7722 -0.0139 -4.7674 16 6 3.2213 -0.6536 -5.8843 17 6 3.5611 -2.0195 -5.8224 18 6 4.0310 -2.6849 -6.9746 19 1 3.8536 -3.7431 -7.0971 20 6 4.7284 -1.9721 -7.9604 21 7 5.1182 -0.7470 -7.7280 22 14 5.1000 -2.7742 -9.6060 23 1 4.5557 -4.1559 -9.6173 24 1 4.4704 -1.9848 -10.6949 25 1 6.5696 -2.8199 -9.8138 26 6 3.4251 -2.7203 -4.6078 27 6 2.9707 -2.0732 -3.4973 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6390 -0.2349 2.1387 32 1 1.7152 -1.7615 1.2264 33 1 3.9671 -1.0596 0.3480 34 1 3.6860 -1.1102 3.3870 35 1 3.7618 -2.5386 2.3276 36 1 6.0114 -1.8441 1.5507 37 1 5.9809 -2.0480 3.3185 38 1 7.1559 0.0416 2.6831 39 1 5.6687 0.3967 3.5947 40 1 5.9490 0.4469 0.5557 41 1 5.8736 1.8754 1.6150 42 1 3.6540 1.3847 0.6243 43 1 3.6231 1.1808 2.3923 44 1 2.2490 -1.6318 -1.1525 45 1 2.5147 1.0339 -4.8132 46 1 3.3200 -0.1133 -6.8142 47 1 5.6003 -0.2538 -8.4101 48 1 3.6802 -3.7685 -4.5565 49 1 2.8658 -2.6096 -2.5658 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487233141.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:02 Heat of formation + Delta-G solvation = -66.772718 kcal Electronic energy + Delta-G solvation = -26304.195874 eV Core-core repulsion = 22807.525245 eV Total energy + Delta-G solvation = -3496.670629 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -39.62237 -38.55632 -37.15970 -35.46763 -33.82801 -32.17164 -30.85123 -30.56246 -29.83677 -29.14168 -26.19894 -25.80840 -22.95348 -22.38112 -21.64074 -21.00415 -20.18030 -19.85125 -19.45950 -17.49622 -16.82283 -15.78766 -15.61169 -15.33416 -14.49998 -14.41453 -14.19947 -14.06024 -13.97967 -13.79241 -13.27073 -13.08505 -12.96003 -12.70957 -12.39217 -12.24350 -12.21126 -12.13917 -11.77750 -11.72754 -11.41016 -11.33185 -11.22876 -11.15620 -10.97714 -10.94084 -10.83515 -10.58916 -10.47368 -10.06015 -9.99937 -9.88415 -9.49191 -9.39576 -8.92905 -8.54014 -7.68403 -7.48595 -6.92893 -4.59221 2.25247 2.92950 2.97809 3.02656 3.03995 3.78021 3.83947 3.92902 4.51366 4.61806 4.62530 4.69023 4.95363 5.06603 5.18351 5.25421 5.39458 5.46485 5.48128 5.49225 5.55959 5.60377 5.62060 5.66688 5.78922 5.84591 5.89659 5.93706 5.98398 6.00026 6.07620 6.11486 6.18129 6.22745 6.26308 6.30960 6.36580 6.45204 6.48184 6.84394 6.86633 7.05135 7.08291 7.14481 7.47107 7.62281 7.82175 7.90409 8.08982 8.30055 8.47095 8.66763 8.77689 9.12590 9.98551 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015841 B = 0.002987 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.137254 B = 9372.146322 C =10191.686868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 H 0.086 0.914 4 C -0.121 4.121 5 C -0.089 4.089 6 C -0.112 4.112 7 C -0.120 4.120 8 C -0.118 4.118 9 C -0.121 4.121 10 C -0.115 4.115 11 N -0.735 5.735 12 C 0.572 3.428 13 O -0.573 6.573 14 C -0.276 4.276 15 C -0.039 4.039 16 C -0.175 4.175 17 C 0.128 3.872 18 C -0.447 4.447 19 H 0.083 0.917 20 C 0.071 3.929 21 N -0.780 5.780 22 Si 0.915 3.085 23 H -0.259 1.259 24 H -0.270 1.270 25 H -0.272 1.272 26 C -0.231 4.231 27 C -0.053 4.053 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.394 0.606 45 H 0.100 0.900 46 H 0.123 0.877 47 H 0.285 0.715 48 H 0.097 0.903 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.913 -1.425 16.066 16.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.104 0.896 4 C -0.159 4.159 5 C -0.107 4.107 6 C -0.150 4.150 7 C -0.158 4.158 8 C -0.155 4.155 9 C -0.159 4.159 10 C -0.152 4.152 11 N -0.388 5.388 12 C 0.366 3.634 13 O -0.455 6.455 14 C -0.281 4.281 15 C -0.059 4.059 16 C -0.195 4.195 17 C 0.125 3.875 18 C -0.475 4.475 19 H 0.101 0.899 20 C -0.149 4.149 21 N -0.404 5.404 22 Si 0.739 3.261 23 H -0.182 1.182 24 H -0.195 1.195 25 H -0.197 1.197 26 C -0.251 4.251 27 C -0.072 4.072 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.229 0.771 45 H 0.118 0.882 46 H 0.141 0.859 47 H 0.096 0.904 48 H 0.115 0.885 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.982 -0.386 15.934 15.969 hybrid contribution 0.406 -0.783 -0.689 1.119 sum -0.576 -1.168 15.245 15.300 Atomic orbital electron populations 1.22184 0.96117 1.01713 1.02081 1.20852 0.93345 0.97774 0.84325 0.89623 1.21938 0.95581 1.00903 0.97471 1.21175 0.94605 0.95858 0.99070 1.21574 0.95438 0.99622 0.98345 1.21533 0.95951 0.96587 1.01728 1.21523 1.00023 0.95468 0.98508 1.21541 0.95974 0.99590 0.98749 1.21619 0.95463 0.96414 1.01702 1.45984 1.69466 1.13783 1.09517 1.18573 0.75857 0.86047 0.82893 1.90632 1.52888 1.16471 1.85471 1.18987 1.20442 0.94694 0.93949 1.20516 0.95563 0.97906 0.91897 1.21088 1.04422 0.96010 0.97950 1.17803 0.86037 0.92113 0.91524 1.19832 1.29362 0.96822 1.01532 0.89890 1.26071 0.93887 0.94584 1.00317 1.69726 1.26123 1.10109 1.34436 0.86136 0.78842 0.80504 0.80595 1.18222 1.19495 1.19722 1.20722 1.11739 0.99336 0.93282 1.20363 0.96990 0.93147 0.96675 0.92389 0.92004 0.92822 0.90903 0.91595 0.90539 0.92272 0.92175 0.91862 0.92386 0.92391 0.92345 0.91798 0.92284 0.91488 0.92375 0.77093 0.88194 0.85937 0.90392 0.88523 0.89324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.48 37.16 0.35 -1.71 16 2 C 0.14 1.91 2.43 -67.93 -0.16 1.74 16 3 H 0.09 1.32 5.91 -51.93 -0.31 1.01 16 4 C -0.12 -1.24 4.23 -26.73 -0.11 -1.35 16 5 C -0.09 -0.95 2.12 -90.62 -0.19 -1.14 16 6 C -0.11 -1.03 5.20 -26.73 -0.14 -1.17 16 7 C -0.12 -1.12 5.92 -26.73 -0.16 -1.27 16 8 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 9 C -0.12 -1.32 5.93 -26.70 -0.16 -1.48 16 10 C -0.11 -1.29 4.98 -26.70 -0.13 -1.42 16 11 N -0.73 -11.71 4.30 -54.81 -0.24 -11.94 16 12 C 0.57 11.94 7.73 -12.42 -0.10 11.84 16 13 O -0.57 -13.57 15.98 5.29 0.08 -13.49 16 14 C -0.28 -6.27 5.89 -104.73 -0.62 -6.88 16 15 C -0.04 -0.97 9.52 -39.61 -0.38 -1.35 16 16 C -0.18 -4.51 8.60 -39.27 -0.34 -4.84 16 17 C 0.13 3.28 5.55 -106.80 -0.59 2.68 16 18 C -0.45 -11.20 9.05 -37.75 -0.34 -11.54 16 19 H 0.08 1.97 7.87 -52.49 -0.41 1.56 16 20 C 0.07 1.70 5.26 -17.31 -0.09 1.61 16 21 N -0.78 -19.33 10.82 55.56 0.60 -18.73 16 22 Si 0.92 17.66 29.57 -169.99 -5.03 12.63 16 23 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 24 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 25 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 26 C -0.23 -5.33 9.73 -39.27 -0.38 -5.72 16 27 C -0.05 -1.11 9.47 -39.61 -0.38 -1.49 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.97 7.47 -51.93 -0.39 0.58 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.89 6.53 -51.93 -0.34 0.55 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.39 5.61 6.54 -40.82 -0.27 5.34 16 45 H 0.10 2.43 7.63 -52.49 -0.40 2.03 16 46 H 0.12 3.24 6.21 -52.49 -0.33 2.91 16 47 H 0.28 6.38 8.29 -40.82 -0.34 6.04 16 48 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 49 H 0.09 1.53 6.37 -52.49 -0.33 1.20 16 LS Contribution 383.88 15.07 5.79 5.79 Total: -1.00 -27.85 383.88 -11.12 -38.97 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -8.25 Total: 11.51 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -4.08 Total: -24.74 kcal Atomic # 7 Polarization: -31.03 SS G_CDS: 0.37 Total: -30.67 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.08 Total: -13.49 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.63 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -27.85 -11.12 -38.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487233141.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.802 kcal (2) G-P(sol) polarization free energy of solvation -27.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds