Wall clock time and date at job start Tue Mar 31 2020 11:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46991 * 2 1 4 4 C 1.53003 * 109.47079 * 119.99697 * 2 1 3 5 5 C 1.52996 * 109.47439 * 182.60259 * 4 2 1 6 6 C 1.52997 * 109.47318 * 185.69113 * 5 4 2 7 7 C 1.52996 * 109.47318 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47371 * 59.99877 * 7 6 5 9 9 C 1.53001 * 109.47314 * 300.00433 * 8 7 6 10 10 C 1.52999 * 109.47018 * 65.68961 * 5 4 2 11 11 N 1.46499 * 109.47393 * 239.99601 * 2 1 3 12 12 C 1.34778 * 119.99866 * 85.00016 * 11 2 1 13 13 O 1.21586 * 120.00024 * 0.02562 * 12 11 2 14 14 C 1.47645 * 119.99740 * 180.02562 * 12 11 2 15 15 C 1.40010 * 119.89047 * 180.02562 * 14 12 11 16 16 C 1.36324 * 120.10070 * 180.22894 * 15 14 12 17 17 C 1.40886 * 119.89420 * 359.52134 * 16 15 14 18 18 C 1.41105 * 120.10376 * 180.23016 * 17 16 15 19 19 H 1.08000 * 119.99792 * 209.10687 * 18 17 16 20 20 C 1.40225 * 120.00072 * 29.10874 * 18 17 16 21 21 N 1.30645 * 119.99961 * 10.24208 * 20 18 17 22 22 Si 1.86801 * 120.00009 * 190.24467 * 20 18 17 23 23 H 1.48508 * 109.46912 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47131 * 119.99430 * 22 20 18 25 25 H 1.48493 * 109.47183 * 240.00093 * 22 20 18 26 26 C 1.40891 * 119.79353 * 0.47651 * 17 16 15 27 27 C 1.36322 * 119.88899 * 359.75457 * 26 17 16 28 28 H 1.09003 * 109.47248 * 300.00741 * 1 2 3 29 29 H 1.08996 * 109.46834 * 60.00022 * 1 2 3 30 30 H 1.08994 * 109.47183 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.47026 * 302.60210 * 4 2 1 32 32 H 1.09003 * 109.47187 * 62.59894 * 4 2 1 33 33 H 1.09001 * 109.47159 * 305.69270 * 5 4 2 34 34 H 1.09001 * 109.47134 * 300.00172 * 6 5 4 35 35 H 1.09003 * 109.46818 * 60.00015 * 6 5 4 36 36 H 1.09001 * 109.47159 * 300.00157 * 7 6 5 37 37 H 1.09003 * 109.47570 * 180.02562 * 7 6 5 38 38 H 1.08992 * 109.47478 * 180.02562 * 8 7 6 39 39 H 1.09001 * 109.46751 * 60.00030 * 8 7 6 40 40 H 1.08999 * 109.47152 * 299.99969 * 9 8 7 41 41 H 1.08990 * 109.47329 * 179.97438 * 9 8 7 42 42 H 1.08999 * 109.47442 * 300.00089 * 10 5 4 43 43 H 1.08999 * 109.47139 * 60.00627 * 10 5 4 44 44 H 0.96999 * 120.00010 * 265.00422 * 11 2 1 45 45 H 1.07992 * 119.95330 * 359.95252 * 15 14 12 46 46 H 1.07996 * 120.04886 * 179.74611 * 16 15 14 47 47 H 0.96996 * 119.99822 * 180.02562 * 21 20 18 48 48 H 1.07994 * 120.05923 * 179.72992 * 26 17 16 49 49 H 1.07998 * 119.94675 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5686 -0.6648 1.2826 6 6 4.0846 -1.5050 2.4524 7 6 5.6132 -1.4491 2.4853 8 6 6.0669 0.0016 2.6601 9 6 5.5508 0.8419 1.4903 10 6 4.0216 0.7861 1.4577 11 7 2.0184 -0.6907 -1.1961 12 6 2.1471 -0.0184 -2.3571 13 8 1.8584 1.1614 -2.4117 14 6 2.6388 -0.7146 -3.5627 15 6 2.7722 -0.0139 -4.7674 16 6 3.2213 -0.6536 -5.8843 17 6 3.5611 -2.0195 -5.8224 18 6 4.0310 -2.6849 -6.9746 19 1 3.8536 -3.7431 -7.0971 20 6 4.7284 -1.9721 -7.9604 21 7 5.1182 -0.7470 -7.7280 22 14 5.1000 -2.7742 -9.6060 23 1 4.5557 -4.1559 -9.6173 24 1 4.4704 -1.9848 -10.6949 25 1 6.5696 -2.8199 -9.8138 26 6 3.4251 -2.7203 -4.6078 27 6 2.9707 -2.0732 -3.4973 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6390 -0.2349 2.1387 32 1 1.7152 -1.7615 1.2264 33 1 3.9671 -1.0596 0.3480 34 1 3.6860 -1.1102 3.3870 35 1 3.7618 -2.5386 2.3276 36 1 6.0114 -1.8441 1.5507 37 1 5.9809 -2.0480 3.3185 38 1 7.1559 0.0416 2.6831 39 1 5.6687 0.3967 3.5947 40 1 5.9490 0.4469 0.5557 41 1 5.8736 1.8754 1.6150 42 1 3.6540 1.3847 0.6243 43 1 3.6231 1.1808 2.3923 44 1 2.2490 -1.6318 -1.1525 45 1 2.5147 1.0339 -4.8132 46 1 3.3200 -0.1133 -6.8142 47 1 5.6003 -0.2538 -8.4101 48 1 3.6802 -3.7685 -4.5565 49 1 2.8658 -2.6096 -2.5658 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487233141.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:59 Heat of formation + Delta-G solvation = -79.103176 kcal Electronic energy + Delta-G solvation = -26304.730563 eV Core-core repulsion = 22807.525245 eV Total energy + Delta-G solvation = -3497.205318 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -41.01549 -39.72609 -38.85258 -36.74344 -35.65056 -33.39622 -32.06177 -31.64336 -31.50596 -30.71960 -27.66877 -27.01554 -24.17063 -23.61716 -22.97728 -22.48184 -21.39326 -21.23369 -20.48715 -19.33944 -18.45145 -17.16228 -17.07007 -16.45273 -15.82539 -15.73294 -15.48275 -15.42000 -15.03612 -14.98264 -14.90703 -14.45393 -14.15847 -14.02402 -13.95680 -13.61562 -13.29850 -13.22545 -13.08383 -13.05052 -12.81744 -12.63677 -12.58752 -12.36718 -12.28065 -11.97127 -11.86239 -11.76076 -11.70794 -11.35362 -11.29825 -11.18666 -10.87208 -10.74358 -10.65042 -9.97298 -9.56912 -9.34585 -8.72362 -6.49726 0.44488 1.13938 1.38471 1.41612 1.54910 2.14327 2.20274 2.46102 2.82858 3.64480 3.68774 3.80092 3.87982 4.06087 4.22873 4.25292 4.30208 4.34091 4.40312 4.42523 4.51008 4.61905 4.65784 4.66960 4.68527 4.80044 4.84630 4.91375 4.97394 4.98714 5.02952 5.08029 5.16178 5.19470 5.23186 5.26168 5.27821 5.33012 5.36134 5.39010 5.44346 5.53053 5.59786 5.65469 5.74788 5.78059 5.98108 6.02082 6.21451 6.57679 6.78449 6.79153 6.90073 7.51449 8.22091 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015841 B = 0.002987 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.137254 B = 9372.146322 C =10191.686868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.138 3.862 3 H 0.062 0.938 4 C -0.110 4.110 5 C -0.088 4.088 6 C -0.107 4.107 7 C -0.122 4.122 8 C -0.114 4.114 9 C -0.123 4.123 10 C -0.113 4.113 11 N -0.714 5.714 12 C 0.571 3.429 13 O -0.608 6.608 14 C -0.285 4.285 15 C -0.055 4.055 16 C -0.195 4.195 17 C 0.101 3.899 18 C -0.476 4.476 19 H 0.091 0.909 20 C 0.030 3.970 21 N -0.816 5.816 22 Si 0.991 3.009 23 H -0.251 1.251 24 H -0.266 1.266 25 H -0.265 1.265 26 C -0.241 4.241 27 C -0.040 4.040 28 H 0.084 0.916 29 H 0.028 0.972 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.040 0.960 41 H 0.059 0.941 42 H 0.037 0.963 43 H 0.074 0.926 44 H 0.406 0.594 45 H 0.089 0.911 46 H 0.104 0.896 47 H 0.292 0.708 48 H 0.117 0.883 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.152 -3.656 18.485 18.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.034 3.966 3 H 0.080 0.920 4 C -0.147 4.147 5 C -0.106 4.106 6 C -0.144 4.144 7 C -0.160 4.160 8 C -0.151 4.151 9 C -0.161 4.161 10 C -0.151 4.151 11 N -0.365 5.365 12 C 0.364 3.636 13 O -0.492 6.492 14 C -0.289 4.289 15 C -0.074 4.074 16 C -0.215 4.215 17 C 0.098 3.902 18 C -0.504 4.504 19 H 0.109 0.891 20 C -0.187 4.187 21 N -0.440 5.440 22 Si 0.811 3.189 23 H -0.174 1.174 24 H -0.191 1.191 25 H -0.190 1.190 26 C -0.260 4.260 27 C -0.059 4.059 28 H 0.103 0.897 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.059 0.941 41 H 0.077 0.923 42 H 0.055 0.945 43 H 0.093 0.907 44 H 0.243 0.757 45 H 0.107 0.893 46 H 0.122 0.878 47 H 0.103 0.897 48 H 0.135 0.865 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.228 -2.643 18.402 18.631 hybrid contribution 0.464 -0.010 -1.326 1.405 sum -0.764 -2.654 17.076 17.297 Atomic orbital electron populations 1.22140 0.95062 1.02623 1.01787 1.21079 0.94116 0.96943 0.84505 0.91952 1.21898 0.94943 1.01748 0.96158 1.21148 0.95052 0.95489 0.98945 1.21538 0.95098 0.99833 0.97926 1.21554 0.96282 0.96483 1.01637 1.21503 1.00278 0.95346 0.98012 1.21551 0.95979 0.99970 0.98610 1.21595 0.95517 0.96689 1.01259 1.45824 1.67755 1.14130 1.08835 1.18373 0.75814 0.85582 0.83799 1.90613 1.54498 1.17967 1.86157 1.19289 1.19938 0.95649 0.94051 1.20576 0.96232 0.97695 0.92926 1.20995 1.06130 0.96704 0.97640 1.18162 0.86754 0.92198 0.93103 1.20140 1.30389 0.97425 1.02480 0.89144 1.27001 0.93059 0.94910 1.03728 1.69796 1.26704 1.11583 1.35938 0.85010 0.78816 0.79587 0.75465 1.17442 1.19082 1.18956 1.21000 1.11736 1.00326 0.92929 1.20694 0.94886 0.92346 0.97967 0.89729 0.95310 0.91237 0.88559 0.89648 0.92886 0.90789 0.91131 0.93316 0.90806 0.92076 0.91040 0.94077 0.92252 0.94451 0.90698 0.75732 0.89272 0.87775 0.89680 0.86525 0.84831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.68 9.48 71.98 0.68 -3.00 16 2 C 0.14 3.48 2.43 44.99 0.11 3.59 16 3 H 0.06 1.92 5.91 -2.39 -0.01 1.91 16 4 C -0.11 -1.87 4.23 30.59 0.13 -1.74 16 5 C -0.09 -1.69 2.12 -10.80 -0.02 -1.71 16 6 C -0.11 -1.58 5.20 30.59 0.16 -1.42 16 7 C -0.12 -1.96 5.92 30.59 0.18 -1.78 16 8 C -0.11 -1.91 5.92 30.60 0.18 -1.73 16 9 C -0.12 -2.65 5.93 30.61 0.18 -2.47 16 10 C -0.11 -2.43 4.98 30.61 0.15 -2.28 16 11 N -0.71 -21.90 4.30 -445.58 -1.92 -23.82 16 12 C 0.57 24.13 7.73 86.73 0.67 24.80 16 13 O -0.61 -29.85 15.98 -3.99 -0.06 -29.91 16 14 C -0.28 -13.12 5.89 -19.93 -0.12 -13.24 16 15 C -0.05 -2.84 9.52 22.25 0.21 -2.63 16 16 C -0.20 -10.57 8.60 22.47 0.19 -10.38 16 17 C 0.10 5.29 5.55 -21.28 -0.12 5.17 16 18 C -0.48 -24.30 9.05 23.46 0.21 -24.09 16 19 H 0.09 4.32 7.87 -2.91 -0.02 4.29 16 20 C 0.03 1.43 5.26 85.35 0.45 1.88 16 21 N -0.82 -41.82 10.82 21.87 0.24 -41.59 16 22 Si 0.99 36.22 29.57 68.60 2.03 38.25 16 23 H -0.25 -8.79 7.11 99.48 0.71 -8.08 16 24 H -0.27 -9.47 7.11 99.48 0.71 -8.77 16 25 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 26 C -0.24 -11.00 9.73 22.47 0.22 -10.78 16 27 C -0.04 -1.65 9.47 22.25 0.21 -1.44 16 28 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.05 1.27 7.47 -2.39 -0.02 1.26 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 36 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.04 1.02 6.53 -2.39 -0.02 1.00 16 43 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.41 10.50 6.54 -92.71 -0.61 9.89 16 45 H 0.09 4.67 7.63 -2.91 -0.02 4.65 16 46 H 0.10 5.90 6.21 -2.91 -0.02 5.88 16 47 H 0.29 13.49 8.29 -92.71 -0.77 12.72 16 48 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 49 H 0.13 4.19 6.37 -2.91 -0.02 4.17 16 Total: -1.00 -64.15 383.88 4.29 -59.86 By element: Atomic # 1 Polarization: 40.13 SS G_CDS: 0.32 Total: 40.46 kcal Atomic # 6 Polarization: -46.93 SS G_CDS: 3.68 Total: -43.24 kcal Atomic # 7 Polarization: -63.72 SS G_CDS: -1.68 Total: -65.40 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -0.06 Total: -29.91 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 2.03 Total: 38.25 kcal Total: -64.15 4.29 -59.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487233141.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.245 kcal (2) G-P(sol) polarization free energy of solvation -64.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds