Wall clock time and date at job start Tue Mar 31 2020 11:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47303 * 2 1 4 4 C 1.53003 * 109.47241 * 120.00304 * 2 1 3 5 5 C 1.53000 * 109.47115 * 182.59893 * 4 2 1 6 6 C 1.52995 * 109.47183 * 65.69010 * 5 4 2 7 7 C 1.53002 * 109.46822 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.47298 * 299.99596 * 7 6 5 9 9 C 1.52999 * 109.46920 * 59.99892 * 8 7 6 10 10 C 1.52999 * 109.46716 * 185.68777 * 5 4 2 11 11 N 1.46498 * 109.47188 * 239.99941 * 2 1 3 12 12 C 1.34785 * 120.00075 * 85.00266 * 11 2 1 13 13 O 1.21546 * 119.99822 * 359.97438 * 12 11 2 14 14 C 1.47886 * 119.99880 * 180.02562 * 12 11 2 15 15 C 1.39916 * 120.02715 * 359.71862 * 14 12 11 16 16 C 1.38326 * 120.35885 * 179.71965 * 15 14 12 17 17 C 1.37756 * 120.40800 * 0.56313 * 16 15 14 18 18 C 1.40742 * 120.04408 * 359.71977 * 17 16 15 19 19 C 1.41437 * 120.18269 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99622 * 331.10711 * 19 18 17 21 21 C 1.39934 * 120.00232 * 151.10940 * 19 18 17 22 22 N 1.30828 * 120.00092 * 349.72017 * 21 19 18 23 23 Si 1.86803 * 120.00085 * 169.72108 * 21 19 18 24 24 H 1.48493 * 109.46994 * 59.99973 * 23 21 19 25 25 H 1.48499 * 109.46990 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46962 * 300.00119 * 23 21 19 27 27 C 1.38997 * 120.02270 * 180.02562 * 14 12 11 28 28 H 1.09002 * 109.47303 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47024 * 300.00127 * 1 2 3 30 30 H 1.09004 * 109.47024 * 59.99788 * 1 2 3 31 31 H 1.09000 * 109.47315 * 62.59274 * 4 2 1 32 32 H 1.09004 * 109.47008 * 302.59659 * 4 2 1 33 33 H 1.09000 * 109.47176 * 305.68656 * 5 4 2 34 34 H 1.09000 * 109.47353 * 59.99755 * 6 5 4 35 35 H 1.09001 * 109.47063 * 299.99757 * 6 5 4 36 36 H 1.09006 * 109.46783 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.47294 * 59.99796 * 7 6 5 38 38 H 1.09000 * 109.47174 * 180.02562 * 8 7 6 39 39 H 1.09000 * 109.47111 * 300.00311 * 8 7 6 40 40 H 1.09009 * 109.46765 * 60.00120 * 9 8 7 41 41 H 1.09001 * 109.47129 * 180.02562 * 9 8 7 42 42 H 1.09000 * 109.47200 * 299.99865 * 10 5 4 43 43 H 1.09006 * 109.47279 * 60.00125 * 10 5 4 44 44 H 0.97002 * 120.00271 * 265.00323 * 11 2 1 45 45 H 1.08005 * 119.82209 * 359.97438 * 15 14 12 46 46 H 1.08004 * 119.79731 * 180.26431 * 16 15 14 47 47 H 1.08005 * 119.97443 * 179.74205 * 17 16 15 48 48 H 0.96996 * 120.00299 * 179.97438 * 22 21 19 49 49 H 1.07998 * 120.19869 * 359.97235 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5686 -0.6649 1.2823 6 6 4.0218 0.7859 1.4575 7 6 5.5504 0.8421 1.4913 8 6 6.0660 0.0020 2.6614 9 6 5.6127 -1.4488 2.4863 10 6 4.0847 -1.5052 2.4522 11 7 2.0183 -0.6906 -1.1961 12 6 2.1471 -0.0182 -2.3572 13 8 1.8576 1.1610 -2.4119 14 6 2.6396 -0.7156 -3.5648 15 6 2.9775 -2.0718 -3.5012 16 6 3.4333 -2.7323 -4.6279 17 6 3.5708 -2.0600 -5.8224 18 6 3.2414 -0.6941 -5.9042 19 6 3.3809 -0.0011 -7.1293 20 1 4.1274 -0.3136 -7.8444 21 6 2.5517 1.0894 -7.4147 22 7 1.5215 1.3455 -6.6502 23 14 2.9159 2.1794 -8.8874 24 1 2.8766 1.3644 -10.1281 25 1 1.8965 3.2560 -8.9705 26 1 4.2637 2.7838 -8.7346 27 6 2.7731 -0.0225 -4.7622 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.7152 -1.7615 1.2263 32 1 1.6392 -0.2351 2.1386 33 1 3.9671 -1.0597 0.3477 34 1 3.6233 1.1807 2.3921 35 1 3.6541 1.3845 0.6241 36 1 5.8732 1.8758 1.6156 37 1 5.9492 0.4472 0.5569 38 1 7.1550 0.0424 2.6857 39 1 5.6671 0.3969 3.5958 40 1 6.0116 -1.8438 1.5518 41 1 5.9797 -2.0473 3.3202 42 1 3.6862 -1.1104 3.3867 43 1 3.7618 -2.5388 2.3274 44 1 2.2490 -1.6318 -1.1526 45 1 2.8781 -2.6070 -2.5684 46 1 3.6876 -3.7803 -4.5696 47 1 3.9313 -2.5816 -6.6968 48 1 0.9469 2.1016 -6.8478 49 1 2.5177 1.0255 -4.8147 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487275935.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:08 Heat of formation + Delta-G solvation = -63.146574 kcal Electronic energy + Delta-G solvation = -26558.592149 eV Core-core repulsion = 23062.078761 eV Total energy + Delta-G solvation = -3496.513388 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -39.67559 -38.59487 -37.07112 -35.49564 -33.70121 -32.20149 -30.89364 -30.64499 -29.48972 -29.25978 -26.17952 -25.28844 -23.23524 -22.67921 -21.64834 -20.96783 -20.23177 -19.82091 -19.42185 -17.70793 -16.13068 -15.81760 -15.62278 -15.06540 -14.68095 -14.46605 -14.41305 -14.09932 -14.08466 -13.74338 -13.25691 -13.05630 -12.99220 -12.71777 -12.48115 -12.39789 -12.26014 -12.02549 -11.76871 -11.63948 -11.34476 -11.17325 -11.12156 -11.07496 -10.96083 -10.91945 -10.68918 -10.49169 -10.47635 -10.07866 -9.97911 -9.90304 -9.68256 -9.23629 -8.95013 -8.57659 -7.60443 -7.45716 -6.71225 -4.41398 2.23799 2.84411 3.09359 3.11439 3.16633 3.76129 3.90889 3.96113 4.49637 4.60141 4.66613 4.70282 4.93681 5.04866 5.16836 5.23692 5.38070 5.44616 5.46549 5.47852 5.56572 5.59074 5.62933 5.66718 5.71524 5.83523 5.88098 5.88752 5.94230 6.05482 6.06153 6.10109 6.16107 6.21009 6.24219 6.27906 6.37412 6.43650 6.46264 6.72726 6.96770 7.02477 7.05536 7.24959 7.40606 7.71222 7.78633 7.94886 8.15582 8.23244 8.53461 8.84168 8.85642 9.02744 10.22530 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015841 B = 0.003186 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.116891 B = 8787.593154 C = 8976.859690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.141 3.859 3 H 0.087 0.913 4 C -0.121 4.121 5 C -0.089 4.089 6 C -0.115 4.115 7 C -0.121 4.121 8 C -0.118 4.118 9 C -0.120 4.120 10 C -0.112 4.112 11 N -0.730 5.730 12 C 0.565 3.435 13 O -0.547 6.547 14 C -0.131 4.131 15 C -0.211 4.211 16 C -0.102 4.102 17 C -0.207 4.207 18 C 0.098 3.902 19 C -0.463 4.463 20 H 0.079 0.921 21 C 0.071 3.929 22 N -0.793 5.793 23 Si 0.913 3.087 24 H -0.266 1.266 25 H -0.278 1.278 26 H -0.264 1.264 27 C -0.085 4.085 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.396 0.604 45 H 0.089 0.911 46 H 0.092 0.908 47 H 0.096 0.904 48 H 0.283 0.717 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.993 -3.800 16.753 17.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.105 0.895 4 C -0.159 4.159 5 C -0.107 4.107 6 C -0.153 4.153 7 C -0.158 4.158 8 C -0.155 4.155 9 C -0.158 4.158 10 C -0.150 4.150 11 N -0.383 5.383 12 C 0.355 3.645 13 O -0.425 6.425 14 C -0.134 4.134 15 C -0.231 4.231 16 C -0.120 4.120 17 C -0.227 4.227 18 C 0.096 3.904 19 C -0.492 4.492 20 H 0.097 0.903 21 C -0.147 4.147 22 N -0.418 5.418 23 Si 0.738 3.262 24 H -0.191 1.191 25 H -0.203 1.203 26 H -0.188 1.188 27 C -0.106 4.106 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.232 0.768 45 H 0.107 0.893 46 H 0.111 0.889 47 H 0.114 0.886 48 H 0.095 0.905 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.565 -2.764 16.745 17.164 hybrid contribution 0.077 -0.079 -0.644 0.653 sum 2.642 -2.843 16.101 16.562 Atomic orbital electron populations 1.22189 0.95926 1.01818 1.02265 1.20894 0.93516 0.97802 0.84190 0.89494 1.21938 0.95562 1.00933 0.97442 1.21177 0.94614 0.95865 0.99053 1.21617 0.95473 0.96409 1.01785 1.21531 0.95977 0.99621 0.98703 1.21525 1.00013 0.95459 0.98538 1.21523 0.95966 0.96595 1.01677 1.21567 0.95432 0.99619 0.98372 1.46028 1.68941 1.13920 1.09440 1.18806 0.76273 0.86296 0.83099 1.90687 1.50507 1.16175 1.85099 1.19534 1.06127 0.94392 0.93376 1.20372 1.11342 0.94003 0.97421 1.20441 1.00551 0.97568 0.93475 1.21157 1.10405 0.94577 0.96569 1.17613 0.89516 0.90593 0.92717 1.19535 1.16564 1.11146 1.01996 0.90286 1.25932 0.93726 0.97024 0.97980 1.69747 1.10802 1.25523 1.35762 0.86284 0.79271 0.79485 0.81184 1.19057 1.20270 1.18836 1.21715 0.98868 1.00571 0.89411 0.92759 0.92272 0.91856 0.91542 0.90808 0.90551 0.92327 0.91452 0.92253 0.91834 0.92397 0.92329 0.91899 0.92390 0.92253 0.92170 0.76830 0.89266 0.88944 0.88628 0.90539 0.84622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.48 37.16 0.35 -1.80 16 2 C 0.14 1.92 2.43 -67.93 -0.16 1.76 16 3 H 0.09 1.35 5.91 -51.93 -0.31 1.05 16 4 C -0.12 -1.23 4.23 -26.73 -0.11 -1.34 16 5 C -0.09 -0.93 2.12 -90.62 -0.19 -1.12 16 6 C -0.12 -1.28 4.97 -26.73 -0.13 -1.41 16 7 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 8 C -0.12 -1.07 5.92 -26.73 -0.16 -1.22 16 9 C -0.12 -1.07 5.92 -26.76 -0.16 -1.23 16 10 C -0.11 -1.00 5.20 -26.76 -0.14 -1.14 16 11 N -0.73 -11.78 4.30 -54.73 -0.24 -12.02 16 12 C 0.56 12.19 7.74 -12.31 -0.10 12.10 16 13 O -0.55 -13.58 16.00 5.33 0.09 -13.50 16 14 C -0.13 -3.08 5.87 -105.04 -0.62 -3.70 16 15 C -0.21 -4.41 9.55 -38.92 -0.37 -4.78 16 16 C -0.10 -2.17 10.01 -39.72 -0.40 -2.57 16 17 C -0.21 -4.93 9.78 -38.81 -0.38 -5.31 16 18 C 0.10 2.60 5.55 -106.87 -0.59 2.01 16 19 C -0.46 -12.25 9.06 -37.73 -0.34 -12.60 16 20 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 21 C 0.07 1.82 5.26 -17.34 -0.09 1.73 16 22 N -0.79 -21.26 10.82 55.55 0.60 -20.66 16 23 Si 0.91 19.03 29.57 -169.99 -5.03 14.00 16 24 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 25 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 26 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 27 C -0.09 -2.29 8.20 -38.44 -0.32 -2.60 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.94 7.47 -51.93 -0.39 0.55 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.89 6.53 -51.93 -0.34 0.55 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.40 5.65 6.55 -40.82 -0.27 5.38 16 45 H 0.09 1.53 6.38 -52.48 -0.33 1.20 16 46 H 0.09 1.67 8.06 -52.48 -0.42 1.24 16 47 H 0.10 2.12 8.06 -52.48 -0.42 1.69 16 48 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16 49 H 0.14 3.95 5.79 -52.49 -0.30 3.64 16 LS Contribution 384.13 15.07 5.79 5.79 Total: -1.00 -29.02 384.13 -11.11 -40.13 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -8.25 Total: 10.91 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -4.07 Total: -24.66 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.37 Total: -32.68 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.09 Total: -13.50 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.02 -11.11 -40.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487275935.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.018 kcal (2) G-P(sol) polarization free energy of solvation -29.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds