Wall clock time and date at job start Tue Mar 31 2020 11:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47303 * 2 1 4 4 C 1.53003 * 109.47241 * 120.00304 * 2 1 3 5 5 C 1.53000 * 109.47115 * 182.59893 * 4 2 1 6 6 C 1.52995 * 109.47183 * 65.69010 * 5 4 2 7 7 C 1.53002 * 109.46822 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.47298 * 299.99596 * 7 6 5 9 9 C 1.52999 * 109.46920 * 59.99892 * 8 7 6 10 10 C 1.52999 * 109.46716 * 185.68777 * 5 4 2 11 11 N 1.46498 * 109.47188 * 239.99941 * 2 1 3 12 12 C 1.34785 * 120.00075 * 85.00266 * 11 2 1 13 13 O 1.21546 * 119.99822 * 359.97438 * 12 11 2 14 14 C 1.47886 * 119.99880 * 180.02562 * 12 11 2 15 15 C 1.39916 * 120.02715 * 359.71862 * 14 12 11 16 16 C 1.38326 * 120.35885 * 179.71965 * 15 14 12 17 17 C 1.37756 * 120.40800 * 0.56313 * 16 15 14 18 18 C 1.40742 * 120.04408 * 359.71977 * 17 16 15 19 19 C 1.41437 * 120.18269 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99622 * 331.10711 * 19 18 17 21 21 C 1.39934 * 120.00232 * 151.10940 * 19 18 17 22 22 N 1.30828 * 120.00092 * 349.72017 * 21 19 18 23 23 Si 1.86803 * 120.00085 * 169.72108 * 21 19 18 24 24 H 1.48493 * 109.46994 * 59.99973 * 23 21 19 25 25 H 1.48499 * 109.46990 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46962 * 300.00119 * 23 21 19 27 27 C 1.38997 * 120.02270 * 180.02562 * 14 12 11 28 28 H 1.09002 * 109.47303 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47024 * 300.00127 * 1 2 3 30 30 H 1.09004 * 109.47024 * 59.99788 * 1 2 3 31 31 H 1.09000 * 109.47315 * 62.59274 * 4 2 1 32 32 H 1.09004 * 109.47008 * 302.59659 * 4 2 1 33 33 H 1.09000 * 109.47176 * 305.68656 * 5 4 2 34 34 H 1.09000 * 109.47353 * 59.99755 * 6 5 4 35 35 H 1.09001 * 109.47063 * 299.99757 * 6 5 4 36 36 H 1.09006 * 109.46783 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.47294 * 59.99796 * 7 6 5 38 38 H 1.09000 * 109.47174 * 180.02562 * 8 7 6 39 39 H 1.09000 * 109.47111 * 300.00311 * 8 7 6 40 40 H 1.09009 * 109.46765 * 60.00120 * 9 8 7 41 41 H 1.09001 * 109.47129 * 180.02562 * 9 8 7 42 42 H 1.09000 * 109.47200 * 299.99865 * 10 5 4 43 43 H 1.09006 * 109.47279 * 60.00125 * 10 5 4 44 44 H 0.97002 * 120.00271 * 265.00323 * 11 2 1 45 45 H 1.08005 * 119.82209 * 359.97438 * 15 14 12 46 46 H 1.08004 * 119.79731 * 180.26431 * 16 15 14 47 47 H 1.08005 * 119.97443 * 179.74205 * 17 16 15 48 48 H 0.96996 * 120.00299 * 179.97438 * 22 21 19 49 49 H 1.07998 * 120.19869 * 359.97235 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5686 -0.6649 1.2823 6 6 4.0218 0.7859 1.4575 7 6 5.5504 0.8421 1.4913 8 6 6.0660 0.0020 2.6614 9 6 5.6127 -1.4488 2.4863 10 6 4.0847 -1.5052 2.4522 11 7 2.0183 -0.6906 -1.1961 12 6 2.1471 -0.0182 -2.3572 13 8 1.8576 1.1610 -2.4119 14 6 2.6396 -0.7156 -3.5648 15 6 2.9775 -2.0718 -3.5012 16 6 3.4333 -2.7323 -4.6279 17 6 3.5708 -2.0600 -5.8224 18 6 3.2414 -0.6941 -5.9042 19 6 3.3809 -0.0011 -7.1293 20 1 4.1274 -0.3136 -7.8444 21 6 2.5517 1.0894 -7.4147 22 7 1.5215 1.3455 -6.6502 23 14 2.9159 2.1794 -8.8874 24 1 2.8766 1.3644 -10.1281 25 1 1.8965 3.2560 -8.9705 26 1 4.2637 2.7838 -8.7346 27 6 2.7731 -0.0225 -4.7622 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.7152 -1.7615 1.2263 32 1 1.6392 -0.2351 2.1386 33 1 3.9671 -1.0597 0.3477 34 1 3.6233 1.1807 2.3921 35 1 3.6541 1.3845 0.6241 36 1 5.8732 1.8758 1.6156 37 1 5.9492 0.4472 0.5569 38 1 7.1550 0.0424 2.6857 39 1 5.6671 0.3969 3.5958 40 1 6.0116 -1.8438 1.5518 41 1 5.9797 -2.0473 3.3202 42 1 3.6862 -1.1104 3.3867 43 1 3.7618 -2.5388 2.3274 44 1 2.2490 -1.6318 -1.1526 45 1 2.8781 -2.6070 -2.5684 46 1 3.6876 -3.7803 -4.5696 47 1 3.9313 -2.5816 -6.6968 48 1 0.9469 2.1016 -6.8478 49 1 2.5177 1.0255 -4.8147 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487275935.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:05 Heat of formation + Delta-G solvation = -77.249326 kcal Electronic energy + Delta-G solvation = -26559.203690 eV Core-core repulsion = 23062.078761 eV Total energy + Delta-G solvation = -3497.124929 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.11116 -39.72644 -38.78798 -36.80533 -35.57809 -33.47640 -32.12701 -31.58637 -31.29505 -30.78254 -27.22538 -27.04579 -24.73596 -23.63454 -22.85548 -22.57105 -21.33988 -21.24412 -20.49238 -19.49591 -17.87030 -17.31821 -16.77135 -16.47053 -16.39643 -15.78100 -15.49716 -15.39571 -15.03668 -14.98785 -14.91952 -14.47988 -14.27224 -14.15220 -13.98188 -13.49811 -13.28212 -13.16109 -13.05297 -12.87236 -12.80975 -12.62617 -12.52976 -12.30914 -12.20967 -11.96760 -11.91295 -11.83415 -11.75462 -11.51291 -11.29527 -11.10944 -10.87628 -10.75257 -10.70548 -10.05350 -9.44118 -9.34696 -8.60225 -6.40933 0.39685 1.01827 1.35590 1.47597 1.48990 2.13782 2.20539 2.33290 2.82583 3.62519 3.69168 3.79678 3.87669 4.01836 4.12299 4.22424 4.25787 4.37926 4.42460 4.50223 4.57720 4.60976 4.65042 4.66000 4.68949 4.77420 4.84227 4.87348 4.90640 4.97870 5.07824 5.09070 5.15300 5.19075 5.21193 5.27792 5.31034 5.32774 5.35739 5.38667 5.44528 5.52098 5.52755 5.64337 5.68336 5.87083 5.92242 6.06463 6.29424 6.54053 6.73934 6.89203 6.95156 7.39282 8.35035 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015841 B = 0.003186 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.116891 B = 8787.593154 C = 8976.859690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.136 3.864 3 H 0.062 0.938 4 C -0.109 4.109 5 C -0.087 4.087 6 C -0.115 4.115 7 C -0.123 4.123 8 C -0.114 4.114 9 C -0.121 4.121 10 C -0.106 4.106 11 N -0.704 5.704 12 C 0.561 3.439 13 O -0.591 6.591 14 C -0.142 4.142 15 C -0.190 4.190 16 C -0.099 4.099 17 C -0.212 4.212 18 C 0.066 3.934 19 C -0.501 4.501 20 H 0.083 0.917 21 C 0.026 3.974 22 N -0.835 5.835 23 Si 0.986 3.014 24 H -0.253 1.253 25 H -0.273 1.273 26 H -0.260 1.260 27 C -0.124 4.124 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.023 0.977 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.035 0.965 36 H 0.057 0.943 37 H 0.043 0.957 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.409 0.591 45 H 0.137 0.863 46 H 0.140 0.860 47 H 0.109 0.891 48 H 0.284 0.716 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.320 -6.509 19.284 20.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.032 3.968 3 H 0.080 0.920 4 C -0.147 4.147 5 C -0.106 4.106 6 C -0.152 4.152 7 C -0.161 4.161 8 C -0.152 4.152 9 C -0.159 4.159 10 C -0.144 4.144 11 N -0.357 5.357 12 C 0.350 3.650 13 O -0.473 6.473 14 C -0.146 4.146 15 C -0.210 4.210 16 C -0.117 4.117 17 C -0.232 4.232 18 C 0.064 3.936 19 C -0.531 4.531 20 H 0.101 0.899 21 C -0.188 4.188 22 N -0.462 5.462 23 Si 0.806 3.194 24 H -0.177 1.177 25 H -0.198 1.198 26 H -0.185 1.185 27 C -0.145 4.145 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.043 0.957 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.247 0.753 45 H 0.154 0.846 46 H 0.157 0.843 47 H 0.127 0.873 48 H 0.094 0.906 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.901 -5.531 19.316 20.301 hybrid contribution 0.008 0.640 -1.256 1.410 sum 2.909 -4.891 18.060 18.935 Atomic orbital electron populations 1.22153 0.95139 1.02740 1.01716 1.21128 0.94087 0.97031 0.84527 0.91984 1.21900 0.95099 1.01814 0.95847 1.21150 0.94885 0.95407 0.99135 1.21599 0.95685 0.96794 1.01164 1.21539 0.95830 0.99955 0.98747 1.21504 1.00320 0.95425 0.97902 1.21542 0.96183 0.96375 1.01762 1.21530 0.95192 0.99863 0.97798 1.45844 1.67035 1.14260 1.08558 1.18691 0.76271 0.85813 0.84175 1.90663 1.52601 1.18112 1.85882 1.19864 1.05678 0.95832 0.93194 1.20879 1.08108 0.92621 0.99360 1.20937 0.98908 0.99645 0.92215 1.21466 1.09635 0.93672 0.98410 1.17954 0.90650 0.92201 0.92832 1.19836 1.17674 1.12909 1.02659 0.89922 1.26846 0.93035 0.98033 1.00858 1.69877 1.12099 1.26315 1.37900 0.85198 0.79021 0.77517 0.77650 1.17706 1.19771 1.18463 1.21500 1.02136 0.99476 0.91391 0.91002 0.89539 0.95749 0.89369 0.88531 0.92616 0.90815 0.94657 0.92406 0.93852 0.91976 0.91207 0.93051 0.90770 0.90932 0.90943 0.75280 0.84572 0.84275 0.87311 0.90571 0.88365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 9.48 71.98 0.68 -3.28 16 2 C 0.14 3.57 2.43 44.99 0.11 3.68 16 3 H 0.06 1.99 5.91 -2.39 -0.01 1.97 16 4 C -0.11 -1.85 4.23 30.60 0.13 -1.72 16 5 C -0.09 -1.63 2.12 -10.80 -0.02 -1.65 16 6 C -0.11 -2.47 4.97 30.59 0.15 -2.32 16 7 C -0.12 -2.58 5.92 30.60 0.18 -2.40 16 8 C -0.11 -1.83 5.92 30.59 0.18 -1.65 16 9 C -0.12 -1.81 5.92 30.58 0.18 -1.63 16 10 C -0.11 -1.49 5.20 30.58 0.16 -1.33 16 11 N -0.70 -22.12 4.30 -445.36 -1.92 -24.03 16 12 C 0.56 24.98 7.74 86.80 0.67 25.65 16 13 O -0.59 -31.40 16.00 -3.86 -0.06 -31.46 16 14 C -0.14 -6.84 5.87 -20.13 -0.12 -6.96 16 15 C -0.19 -7.48 9.55 22.70 0.22 -7.27 16 16 C -0.10 -3.94 10.01 22.18 0.22 -3.71 16 17 C -0.21 -10.01 9.78 22.77 0.22 -9.79 16 18 C 0.07 3.64 5.55 -21.32 -0.12 3.52 16 19 C -0.50 -27.85 9.06 23.47 0.21 -27.64 16 20 H 0.08 4.32 7.87 -2.91 -0.02 4.30 16 21 C 0.03 1.37 5.26 85.25 0.45 1.82 16 22 N -0.84 -47.91 10.82 21.82 0.24 -47.68 16 23 Si 0.99 40.67 29.57 68.60 2.03 42.70 16 24 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 25 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 26 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 27 C -0.12 -7.06 8.20 23.01 0.19 -6.87 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.28 7.47 -2.39 -0.02 1.26 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.03 0.97 6.53 -2.39 -0.02 0.96 16 36 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.05 0.88 8.14 -2.38 -0.02 0.87 16 41 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 44 H 0.41 10.48 6.55 -92.71 -0.61 9.87 16 45 H 0.14 4.03 6.38 -2.91 -0.02 4.01 16 46 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 47 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 48 H 0.28 15.11 8.30 -92.71 -0.77 14.34 16 49 H 0.10 6.26 5.79 -2.91 -0.02 6.24 16 Total: -1.00 -70.22 384.13 4.31 -65.91 By element: Atomic # 1 Polarization: 37.80 SS G_CDS: 0.32 Total: 38.12 kcal Atomic # 6 Polarization: -47.25 SS G_CDS: 3.70 Total: -43.55 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: -1.68 Total: -71.71 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.06 Total: -31.46 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -70.22 4.31 -65.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487275935.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.337 kcal (2) G-P(sol) polarization free energy of solvation -70.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds