Wall clock time and date at job start Tue Mar 31 2020 11:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46492 * 109.47439 * 2 1 4 4 C 1.46499 * 119.99939 * 90.00357 * 3 2 1 5 5 C 1.50704 * 109.47058 * 90.00111 * 4 3 2 6 6 H 1.07997 * 119.99980 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99847 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00120 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00180 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47406 * 89.99409 * 9 7 5 11 11 H 1.48499 * 109.47451 * 209.99601 * 9 7 5 12 12 H 1.48501 * 109.46833 * 329.99655 * 9 7 5 13 13 C 1.34779 * 120.00679 * 270.00403 * 3 2 1 14 14 O 1.21270 * 120.00545 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99605 * 359.97438 * 13 3 2 16 16 C 1.52997 * 109.47364 * 185.42923 * 15 13 3 17 17 H 1.08993 * 110.26696 * 307.76606 * 16 15 13 18 18 C 1.54354 * 110.29898 * 69.94434 * 16 15 13 19 19 C 1.54344 * 102.39419 * 145.28136 * 18 16 15 20 20 H 1.08994 * 110.38879 * 92.61552 * 19 18 16 21 21 C 1.53006 * 110.29918 * 214.71915 * 19 18 16 22 22 C 1.51363 * 105.17542 * 333.64074 * 19 18 16 23 23 C 1.38268 * 109.75101 * 17.19626 * 22 19 18 24 24 C 1.38456 * 119.84622 * 179.97438 * 23 22 19 25 25 C 1.38147 * 120.21635 * 359.97438 * 24 23 22 26 26 C 1.38207 * 119.93451 * 0.02562 * 25 24 23 27 27 C 1.38149 * 119.93748 * 0.02562 * 26 25 24 28 28 C 1.50695 * 119.89224 * 179.97438 * 27 26 25 29 29 H 1.09000 * 109.46642 * 300.00039 * 1 2 3 30 30 H 1.09003 * 109.47224 * 59.99044 * 1 2 3 31 31 H 1.08994 * 109.47387 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46939 * 240.00261 * 2 1 3 33 33 H 1.08998 * 109.47147 * 120.00489 * 2 1 3 34 34 H 1.09000 * 109.47218 * 330.00301 * 4 3 2 35 35 H 1.09006 * 109.47588 * 209.99806 * 4 3 2 36 36 H 0.97008 * 120.00246 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.47069 * 305.43016 * 15 13 3 38 38 H 1.09004 * 109.47357 * 65.42608 * 15 13 3 39 39 H 1.09002 * 110.81950 * 263.50547 * 18 16 15 40 40 H 1.08995 * 110.82396 * 27.05265 * 18 16 15 41 41 H 1.09002 * 109.47124 * 177.20102 * 21 19 18 42 42 H 1.09001 * 109.46831 * 297.20265 * 21 19 18 43 43 H 1.09003 * 109.47373 * 57.19738 * 21 19 18 44 44 H 1.07999 * 119.88568 * 180.02562 * 24 23 22 45 45 H 1.07998 * 120.02761 * 180.02562 * 25 24 23 46 46 H 1.08002 * 120.02803 * 180.02562 * 26 25 24 47 47 H 1.08992 * 109.47455 * 269.98116 * 28 27 26 48 48 H 1.09006 * 109.47036 * 29.98214 * 28 27 26 49 49 H 1.08998 * 109.47087 * 149.97701 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2627 2.0717 1.2687 5 6 3.6860 1.8348 1.7037 6 1 4.3428 1.2300 1.0960 7 6 4.1494 2.3893 2.8779 8 7 3.3495 3.1254 3.6181 9 14 5.9134 2.0952 3.4174 10 1 6.7856 3.1604 2.8607 11 1 5.9881 2.1191 4.9003 12 1 6.3690 0.7722 2.9201 13 6 2.2431 2.0166 -1.1671 14 8 2.6478 3.1598 -1.1671 15 6 1.9923 1.3061 -2.4723 16 6 2.4504 2.1928 -3.6319 17 1 2.0036 3.1835 -3.5491 18 6 3.9903 2.2972 -3.6503 19 6 4.2998 2.3653 -5.1609 20 1 4.3528 3.4026 -5.4912 21 6 5.6140 1.6439 -5.4665 22 6 3.1435 1.6580 -5.8345 23 6 2.0805 1.5589 -4.9557 24 6 0.9074 0.9446 -5.3599 25 6 0.7958 0.4314 -6.6376 26 6 1.8582 0.5305 -7.5159 27 6 3.0300 1.1421 -7.1142 28 6 4.1881 1.2492 -8.0725 29 1 -0.3632 0.5139 0.8900 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.5820 1.6875 2.0284 35 1 2.0958 3.1410 1.1385 36 1 3.6756 3.5159 4.4440 37 1 2.5496 0.3694 -2.4890 38 1 0.9273 1.0970 -2.5735 39 1 4.3232 3.2041 -3.1453 40 1 4.4440 1.4137 -3.2013 41 1 5.7942 1.6571 -6.5414 42 1 6.4332 2.1488 -4.9545 43 1 5.5509 0.6120 -5.1212 44 1 0.0766 0.8671 -4.6742 45 1 -0.1209 -0.0468 -6.9498 46 1 1.7725 0.1302 -8.5153 47 1 4.8257 0.3710 -7.9715 48 1 3.8106 1.3086 -9.0934 49 1 4.7655 2.1454 -7.8460 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488743431.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:54 Heat of formation + Delta-G solvation = -31.800135 kcal Electronic energy + Delta-G solvation = -26810.218831 eV Core-core repulsion = 23315.064727 eV Total energy + Delta-G solvation = -3495.154104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.64890 -38.93472 -36.25463 -35.18040 -33.99599 -32.78788 -31.09850 -30.05142 -29.59079 -27.96189 -27.22873 -26.00606 -23.85294 -22.97873 -22.28841 -21.95508 -20.44022 -19.58489 -18.12801 -16.79031 -16.36860 -15.98613 -15.62688 -15.42637 -14.91669 -14.74087 -14.57298 -14.09336 -13.73397 -13.68839 -13.34032 -13.19423 -13.13334 -12.68865 -12.56378 -12.40327 -12.15309 -12.09120 -11.97909 -11.78282 -11.64047 -11.53503 -11.20639 -11.12341 -10.92006 -10.82556 -10.79716 -10.64977 -10.47938 -10.47015 -10.28588 -10.09921 -9.60778 -8.85638 -8.58208 -8.47963 -8.41447 -7.61103 -6.02347 -4.06827 1.33765 1.35736 3.31921 3.37694 3.39430 3.51126 3.68771 3.99865 4.43722 4.45538 4.55323 4.82517 4.89191 4.96746 5.03873 5.17378 5.22843 5.25780 5.32718 5.34427 5.35549 5.44755 5.48143 5.48775 5.58236 5.66565 5.68532 5.73840 5.78358 5.83517 5.91220 5.97655 6.01605 6.05176 6.10907 6.21004 6.26084 6.27164 6.39479 6.45332 6.48864 6.51814 6.60029 6.71916 6.99655 7.11574 7.48158 7.59971 7.94590 8.26656 8.49018 8.93356 9.16220 9.58330 11.05673 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016662 B = 0.003486 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.045325 B = 8029.129152 C = 9193.884763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.106 3.894 3 N -0.599 5.599 4 C 0.246 3.754 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.505 3.495 14 O -0.541 6.541 15 C -0.131 4.131 16 C -0.033 4.033 17 H 0.096 0.904 18 C -0.105 4.105 19 C -0.054 4.054 20 H 0.083 0.917 21 C -0.151 4.151 22 C -0.088 4.088 23 C -0.080 4.080 24 C -0.113 4.113 25 C -0.119 4.119 26 C -0.127 4.127 27 C -0.074 4.074 28 C -0.116 4.116 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.030 0.970 35 H 0.042 0.958 36 H 0.263 0.737 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.069 0.931 48 H 0.061 0.939 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.390 -7.560 -21.151 22.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.330 5.330 4 C 0.127 3.873 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 C 0.292 3.708 14 O -0.419 6.419 15 C -0.171 4.171 16 C -0.052 4.052 17 H 0.114 0.886 18 C -0.142 4.142 19 C -0.072 4.072 20 H 0.101 0.899 21 C -0.208 4.208 22 C -0.088 4.088 23 C -0.080 4.080 24 C -0.131 4.131 25 C -0.137 4.137 26 C -0.145 4.145 27 C -0.074 4.074 28 C -0.172 4.172 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.087 0.913 48 H 0.080 0.920 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.174 -6.850 -20.939 22.259 hybrid contribution 0.742 -0.322 0.479 0.940 sum -2.431 -7.172 -20.460 21.817 Atomic orbital electron populations 1.22215 0.96902 1.01321 1.02254 1.21402 0.93436 0.84368 1.02586 1.48257 1.63785 1.13174 1.07831 1.19240 0.96146 0.93610 0.78283 1.21441 0.96962 1.31733 1.06152 0.92523 1.24933 0.97774 0.95001 0.96416 1.69936 1.35586 1.33558 1.14383 0.86522 0.84877 0.78617 0.77540 1.20563 1.21181 1.19948 1.20296 0.78419 0.86964 0.85111 1.90646 1.45822 1.18142 1.87253 1.21792 1.02653 0.99664 0.93034 1.20459 0.96578 0.98907 0.89235 0.88612 1.22438 0.94140 1.03655 0.93965 1.20701 0.92542 0.98760 0.95234 0.89858 1.22023 0.96366 1.00564 1.01879 1.20469 0.96262 0.98815 0.93237 1.20673 0.93750 0.97381 0.96205 1.20621 0.97054 0.99152 0.96231 1.20966 0.98645 1.00437 0.93683 1.20865 0.93153 1.00900 0.99612 1.19387 0.95678 0.98628 0.93740 1.20914 0.96341 1.02400 0.97554 0.92108 0.93101 0.92260 0.91732 0.90119 0.95203 0.93969 0.92771 0.89575 0.89632 0.89462 0.91070 0.91905 0.92335 0.92580 0.86364 0.86170 0.86318 0.91267 0.92013 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.24 37.16 0.38 -1.90 16 2 C 0.11 1.72 5.96 -4.04 -0.02 1.70 16 3 N -0.60 -12.61 2.46 -175.06 -0.43 -13.04 16 4 C 0.25 6.46 5.16 -5.19 -0.03 6.43 16 5 C -0.52 -14.89 9.39 -34.44 -0.32 -15.21 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 9 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.51 10.33 7.43 -10.98 -0.08 10.25 16 14 O -0.54 -13.23 14.70 5.57 0.08 -13.15 16 15 C -0.13 -1.98 3.74 -27.88 -0.10 -2.08 16 16 C -0.03 -0.49 2.48 -90.74 -0.22 -0.71 16 17 H 0.10 1.54 7.80 -51.93 -0.41 1.14 16 18 C -0.10 -1.53 5.37 -25.32 -0.14 -1.67 16 19 C -0.05 -0.66 3.15 -90.74 -0.29 -0.94 16 20 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 21 C -0.15 -1.58 8.73 37.16 0.32 -1.26 16 22 C -0.09 -1.09 5.53 -104.21 -0.58 -1.67 16 23 C -0.08 -1.04 5.60 -104.20 -0.58 -1.63 16 24 C -0.11 -1.30 9.69 -39.53 -0.38 -1.69 16 25 C -0.12 -1.22 10.05 -39.63 -0.40 -1.62 16 26 C -0.13 -1.29 9.69 -39.63 -0.38 -1.67 16 27 C -0.07 -0.81 5.86 -104.58 -0.61 -1.42 16 28 C -0.12 -0.97 8.33 36.00 0.30 -0.67 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.65 7.39 -51.93 -0.38 0.27 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.88 6.29 -51.93 -0.33 0.56 16 33 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 34 H 0.03 0.79 8.07 -51.93 -0.42 0.38 16 35 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.09 1.21 6.94 -51.93 -0.36 0.85 16 38 H 0.09 1.12 6.82 -51.93 -0.35 0.76 16 39 H 0.09 1.44 7.83 -51.93 -0.41 1.03 16 40 H 0.07 1.07 7.56 -51.93 -0.39 0.68 16 41 H 0.06 0.55 4.88 -51.93 -0.25 0.30 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 44 H 0.12 1.21 7.67 -52.49 -0.40 0.80 16 45 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 46 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 47 H 0.07 0.53 7.99 -51.93 -0.41 0.12 16 48 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 49 H 0.07 0.57 6.28 -51.93 -0.33 0.25 16 LS Contribution 385.18 15.07 5.80 5.80 Total: -1.00 -32.54 385.18 -10.24 -42.78 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -8.17 Total: 0.82 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -3.24 Total: -14.13 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.31 Total: -39.05 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.08 Total: -13.15 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.54 -10.24 -42.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488743431.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.982 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds