Wall clock time and date at job start Tue Mar 31 2020 11:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46492 * 109.47439 * 2 1 4 4 C 1.46499 * 119.99939 * 90.00357 * 3 2 1 5 5 C 1.50704 * 109.47058 * 90.00111 * 4 3 2 6 6 H 1.07997 * 119.99980 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99847 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00120 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00180 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47406 * 89.99409 * 9 7 5 11 11 H 1.48499 * 109.47451 * 209.99601 * 9 7 5 12 12 H 1.48501 * 109.46833 * 329.99655 * 9 7 5 13 13 C 1.34779 * 120.00679 * 270.00403 * 3 2 1 14 14 O 1.21270 * 120.00545 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99605 * 359.97438 * 13 3 2 16 16 C 1.52997 * 109.47364 * 185.42923 * 15 13 3 17 17 H 1.08993 * 110.26696 * 307.76606 * 16 15 13 18 18 C 1.54354 * 110.29898 * 69.94434 * 16 15 13 19 19 C 1.54344 * 102.39419 * 145.28136 * 18 16 15 20 20 H 1.08994 * 110.38879 * 92.61552 * 19 18 16 21 21 C 1.53006 * 110.29918 * 214.71915 * 19 18 16 22 22 C 1.51363 * 105.17542 * 333.64074 * 19 18 16 23 23 C 1.38268 * 109.75101 * 17.19626 * 22 19 18 24 24 C 1.38456 * 119.84622 * 179.97438 * 23 22 19 25 25 C 1.38147 * 120.21635 * 359.97438 * 24 23 22 26 26 C 1.38207 * 119.93451 * 0.02562 * 25 24 23 27 27 C 1.38149 * 119.93748 * 0.02562 * 26 25 24 28 28 C 1.50695 * 119.89224 * 179.97438 * 27 26 25 29 29 H 1.09000 * 109.46642 * 300.00039 * 1 2 3 30 30 H 1.09003 * 109.47224 * 59.99044 * 1 2 3 31 31 H 1.08994 * 109.47387 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46939 * 240.00261 * 2 1 3 33 33 H 1.08998 * 109.47147 * 120.00489 * 2 1 3 34 34 H 1.09000 * 109.47218 * 330.00301 * 4 3 2 35 35 H 1.09006 * 109.47588 * 209.99806 * 4 3 2 36 36 H 0.97008 * 120.00246 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.47069 * 305.43016 * 15 13 3 38 38 H 1.09004 * 109.47357 * 65.42608 * 15 13 3 39 39 H 1.09002 * 110.81950 * 263.50547 * 18 16 15 40 40 H 1.08995 * 110.82396 * 27.05265 * 18 16 15 41 41 H 1.09002 * 109.47124 * 177.20102 * 21 19 18 42 42 H 1.09001 * 109.46831 * 297.20265 * 21 19 18 43 43 H 1.09003 * 109.47373 * 57.19738 * 21 19 18 44 44 H 1.07999 * 119.88568 * 180.02562 * 24 23 22 45 45 H 1.07998 * 120.02761 * 180.02562 * 25 24 23 46 46 H 1.08002 * 120.02803 * 180.02562 * 26 25 24 47 47 H 1.08992 * 109.47455 * 269.98116 * 28 27 26 48 48 H 1.09006 * 109.47036 * 29.98214 * 28 27 26 49 49 H 1.08998 * 109.47087 * 149.97701 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2627 2.0717 1.2687 5 6 3.6860 1.8348 1.7037 6 1 4.3428 1.2300 1.0960 7 6 4.1494 2.3893 2.8779 8 7 3.3495 3.1254 3.6181 9 14 5.9134 2.0952 3.4174 10 1 6.7856 3.1604 2.8607 11 1 5.9881 2.1191 4.9003 12 1 6.3690 0.7722 2.9201 13 6 2.2431 2.0166 -1.1671 14 8 2.6478 3.1598 -1.1671 15 6 1.9923 1.3061 -2.4723 16 6 2.4504 2.1928 -3.6319 17 1 2.0036 3.1835 -3.5491 18 6 3.9903 2.2972 -3.6503 19 6 4.2998 2.3653 -5.1609 20 1 4.3528 3.4026 -5.4912 21 6 5.6140 1.6439 -5.4665 22 6 3.1435 1.6580 -5.8345 23 6 2.0805 1.5589 -4.9557 24 6 0.9074 0.9446 -5.3599 25 6 0.7958 0.4314 -6.6376 26 6 1.8582 0.5305 -7.5159 27 6 3.0300 1.1421 -7.1142 28 6 4.1881 1.2492 -8.0725 29 1 -0.3632 0.5139 0.8900 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.5820 1.6875 2.0284 35 1 2.0958 3.1410 1.1385 36 1 3.6756 3.5159 4.4440 37 1 2.5496 0.3694 -2.4890 38 1 0.9273 1.0970 -2.5735 39 1 4.3232 3.2041 -3.1453 40 1 4.4440 1.4137 -3.2013 41 1 5.7942 1.6571 -6.5414 42 1 6.4332 2.1488 -4.9545 43 1 5.5509 0.6120 -5.1212 44 1 0.0766 0.8671 -4.6742 45 1 -0.1209 -0.0468 -6.9498 46 1 1.7725 0.1302 -8.5153 47 1 4.8257 0.3710 -7.9715 48 1 3.8106 1.3086 -9.0934 49 1 4.7655 2.1454 -7.8460 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488743431.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:53 Heat of formation + Delta-G solvation = -48.107137 kcal Electronic energy + Delta-G solvation = -26810.925956 eV Core-core repulsion = 23315.064727 eV Total energy + Delta-G solvation = -3495.861229 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.66926 -40.46470 -37.33471 -36.75517 -35.06435 -34.75366 -32.21502 -31.52224 -30.54299 -29.33524 -28.46608 -27.23486 -25.25748 -24.45187 -23.72056 -22.90394 -21.36487 -20.66523 -19.66673 -18.63861 -18.03863 -17.31641 -17.02997 -16.45319 -16.30498 -16.08600 -15.66318 -15.50701 -14.96967 -14.68919 -14.44223 -14.42016 -14.15580 -14.07868 -13.78995 -13.55354 -13.44735 -13.26947 -13.11821 -13.01373 -12.92832 -12.85579 -12.66599 -12.60658 -12.45226 -12.24614 -12.12353 -11.87495 -11.77700 -11.72370 -11.67365 -11.45563 -11.26929 -10.65622 -10.53193 -9.42557 -9.40338 -9.37686 -8.22831 -6.37736 0.50034 0.52558 1.34995 1.38106 1.47798 1.88051 2.31144 2.45977 2.87313 3.06375 3.44479 3.52033 3.82527 3.88016 4.00980 4.10935 4.13639 4.18701 4.29209 4.34293 4.42588 4.45029 4.50206 4.58293 4.63133 4.66534 4.69631 4.83429 4.87335 4.88091 4.96511 4.98643 5.03877 5.05191 5.06342 5.10216 5.15840 5.21532 5.23910 5.25481 5.37382 5.39036 5.50110 5.58314 5.66245 5.71231 5.85580 5.87571 6.06910 6.19515 6.70196 6.83386 7.28398 7.52603 8.84173 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016662 B = 0.003486 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.045325 B = 8029.129152 C = 9193.884763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.263 3.737 5 C -0.541 4.541 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.280 1.280 11 H -0.274 1.274 12 H -0.261 1.261 13 C 0.497 3.503 14 O -0.592 6.592 15 C -0.113 4.113 16 C -0.030 4.030 17 H 0.070 0.930 18 C -0.107 4.107 19 C -0.049 4.049 20 H 0.081 0.919 21 C -0.147 4.147 22 C -0.102 4.102 23 C -0.097 4.097 24 C -0.121 4.121 25 C -0.118 4.118 26 C -0.127 4.127 27 C -0.081 4.081 28 C -0.116 4.116 29 H 0.037 0.963 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.019 0.981 35 H -0.005 1.005 36 H 0.267 0.733 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.130 0.870 45 H 0.147 0.853 46 H 0.146 0.854 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.394 -10.317 -23.821 26.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.142 3.858 5 C -0.579 4.579 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.206 1.206 11 H -0.199 1.199 12 H -0.185 1.185 13 C 0.286 3.714 14 O -0.474 6.474 15 C -0.153 4.153 16 C -0.049 4.049 17 H 0.088 0.912 18 C -0.144 4.144 19 C -0.067 4.067 20 H 0.099 0.901 21 C -0.204 4.204 22 C -0.102 4.102 23 C -0.097 4.097 24 C -0.139 4.139 25 C -0.136 4.136 26 C -0.145 4.145 27 C -0.081 4.081 28 C -0.172 4.172 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.037 0.963 35 H 0.013 0.987 36 H 0.076 0.924 37 H 0.123 0.877 38 H 0.131 0.869 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.148 0.852 45 H 0.165 0.835 46 H 0.163 0.837 47 H 0.097 0.903 48 H 0.097 0.903 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.201 -9.653 -23.626 25.722 hybrid contribution 0.678 0.553 1.272 1.543 sum -2.523 -9.100 -22.355 24.268 Atomic orbital electron populations 1.22148 0.94544 1.03491 1.01663 1.21730 0.95364 0.81494 1.03707 1.48301 1.63993 1.15031 1.06311 1.18665 0.95204 0.91422 0.80548 1.21711 0.97883 1.31890 1.06461 0.92919 1.25865 1.02390 0.94513 0.96426 1.70058 1.37728 1.34289 1.14848 0.85434 0.79066 0.78864 0.77571 1.20632 1.19914 1.18545 1.21289 0.77028 0.86575 0.86514 1.90619 1.47979 1.20657 1.88098 1.21734 1.04612 0.99438 0.89479 1.20319 0.96187 0.97888 0.90494 0.91171 1.22353 0.94550 1.01687 0.95831 1.20607 0.93823 0.99118 0.93168 0.90088 1.22002 0.95215 0.99943 1.03211 1.20528 0.95873 0.99665 0.94166 1.20526 0.95074 0.98982 0.95162 1.20839 0.96698 0.99045 0.97320 1.21317 0.99746 0.99620 0.92934 1.21257 0.92548 0.99904 1.00783 1.19704 0.96962 0.98025 0.93371 1.20959 0.95652 1.02764 0.97825 0.94362 0.92065 0.88614 0.88393 0.91174 0.96281 0.98714 0.92433 0.87744 0.86865 0.92619 0.91680 0.89843 0.92560 0.92910 0.85188 0.83504 0.83651 0.90330 0.90299 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 10.24 71.98 0.74 -3.32 16 2 C 0.10 3.12 5.96 86.38 0.51 3.63 16 3 N -0.61 -26.26 2.46 -826.16 -2.03 -28.29 16 4 C 0.26 14.58 5.16 85.63 0.44 15.02 16 5 C -0.54 -31.85 9.39 25.60 0.24 -31.61 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.40 5.46 84.65 0.46 0.86 16 8 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 9 Si 0.97 45.65 29.54 68.60 2.03 47.68 16 10 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 13 C 0.50 21.05 7.43 87.66 0.65 21.70 16 14 O -0.59 -31.04 14.70 -3.00 -0.04 -31.08 16 15 C -0.11 -3.34 3.74 29.85 0.11 -3.23 16 16 C -0.03 -0.91 2.48 -10.87 -0.03 -0.93 16 17 H 0.07 2.43 7.80 -2.39 -0.02 2.41 16 18 C -0.11 -3.29 5.37 31.51 0.17 -3.12 16 19 C -0.05 -1.20 3.15 -10.87 -0.03 -1.23 16 20 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 21 C -0.15 -2.95 8.73 71.98 0.63 -2.32 16 22 C -0.10 -2.41 5.53 -19.60 -0.11 -2.52 16 23 C -0.10 -2.43 5.60 -19.59 -0.11 -2.54 16 24 C -0.12 -2.50 9.69 22.30 0.22 -2.28 16 25 C -0.12 -2.00 10.05 22.24 0.22 -1.77 16 26 C -0.13 -2.10 9.69 22.24 0.22 -1.88 16 27 C -0.08 -1.54 5.86 -19.84 -0.12 -1.65 16 28 C -0.12 -1.57 8.33 71.23 0.59 -0.98 16 29 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 1.42 7.39 -2.39 -0.02 1.40 16 31 H 0.10 1.75 8.14 -2.39 -0.02 1.74 16 32 H 0.10 2.42 6.29 -2.38 -0.01 2.41 16 33 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 34 H 0.02 1.08 8.07 -2.39 -0.02 1.06 16 35 H -0.01 -0.34 7.42 -2.38 -0.02 -0.35 16 36 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 37 H 0.10 2.74 6.94 -2.39 -0.02 2.72 16 38 H 0.11 2.72 6.82 -2.38 -0.02 2.71 16 39 H 0.05 2.02 7.83 -2.39 -0.02 2.00 16 40 H 0.06 2.03 7.56 -2.39 -0.02 2.01 16 41 H 0.08 1.31 4.88 -2.39 -0.01 1.30 16 42 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.05 1.09 8.13 -2.39 -0.02 1.07 16 44 H 0.13 2.28 7.67 -2.91 -0.02 2.25 16 45 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 46 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 47 H 0.08 0.94 7.99 -2.39 -0.02 0.92 16 48 H 0.08 0.81 8.08 -2.38 -0.02 0.79 16 49 H 0.07 0.96 6.28 -2.39 -0.02 0.94 16 Total: -1.00 -75.27 385.18 5.97 -69.30 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.92 Total: 17.60 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 4.81 Total: -18.19 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -1.74 Total: -85.31 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.04 Total: -31.08 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -75.27 5.97 -69.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488743431.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.196 kcal (2) G-P(sol) polarization free energy of solvation -75.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds