Wall clock time and date at job start Tue Mar 31 2020 11:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47222 * 2 1 4 4 C 1.46507 * 119.99636 * 270.00218 * 3 2 1 5 5 C 1.50700 * 109.46832 * 269.99912 * 4 3 2 6 6 H 1.07997 * 120.00352 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99900 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00037 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99981 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47402 * 89.99759 * 9 7 5 11 11 H 1.48504 * 109.46927 * 210.00061 * 9 7 5 12 12 H 1.48500 * 109.46998 * 329.99742 * 9 7 5 13 13 C 1.34772 * 120.00120 * 90.00241 * 3 2 1 14 14 O 1.21282 * 120.00091 * 180.02562 * 13 3 2 15 15 C 1.50695 * 119.99896 * 359.97438 * 13 3 2 16 16 C 1.52999 * 109.47119 * 185.75772 * 15 13 3 17 17 H 1.09007 * 110.27049 * 303.80317 * 16 15 13 18 18 C 1.54343 * 110.30519 * 65.87760 * 16 15 13 19 19 C 1.54347 * 102.40009 * 145.37550 * 18 16 15 20 20 H 1.09000 * 110.30191 * 214.62269 * 19 18 16 21 21 C 1.52995 * 110.30269 * 92.56898 * 19 18 16 22 22 C 1.51370 * 105.25564 * 333.59635 * 19 18 16 23 23 C 1.38495 * 109.62348 * 17.23998 * 22 19 18 24 24 C 1.38455 * 119.81692 * 179.97438 * 23 22 19 25 25 C 1.38742 * 120.04717 * 0.02562 * 24 23 22 26 26 C 1.38204 * 120.00590 * 359.97438 * 25 24 23 27 27 C 1.38153 * 119.93493 * 359.97438 * 26 25 24 28 28 C 1.50699 * 119.89333 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.46828 * 300.00680 * 1 2 3 30 30 H 1.09010 * 109.46949 * 59.99769 * 1 2 3 31 31 H 1.08993 * 109.47389 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46548 * 239.99791 * 2 1 3 33 33 H 1.09000 * 109.46850 * 120.00093 * 2 1 3 34 34 H 1.08991 * 109.47168 * 30.00008 * 4 3 2 35 35 H 1.09006 * 109.46724 * 150.00308 * 4 3 2 36 36 H 0.97000 * 120.00200 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.46892 * 65.76288 * 15 13 3 38 38 H 1.08994 * 109.47357 * 305.76107 * 15 13 3 39 39 H 1.09007 * 110.81666 * 27.15094 * 18 16 15 40 40 H 1.08996 * 110.99382 * 263.68456 * 18 16 15 41 41 H 1.09007 * 109.47097 * 61.37682 * 21 19 18 42 42 H 1.09002 * 109.47267 * 301.37608 * 21 19 18 43 43 H 1.09001 * 109.47385 * 181.37181 * 21 19 18 44 44 H 1.08003 * 119.89239 * 179.97438 * 24 23 22 45 45 H 1.08001 * 119.96039 * 179.97438 * 25 24 23 46 46 H 1.08005 * 120.03537 * 180.02562 * 26 25 24 47 47 H 1.08995 * 109.47578 * 269.98192 * 28 27 26 48 48 H 1.09002 * 109.47039 * 29.98674 * 28 27 26 49 49 H 1.09004 * 109.46805 * 149.98065 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7039 6 1 4.3426 1.2301 -1.0963 7 6 4.1494 2.3903 -2.8776 8 7 3.3497 3.1272 -3.6173 9 14 5.9134 2.0961 -3.4173 10 1 5.9760 0.8756 -4.2608 11 1 6.3929 3.2637 -4.1996 12 1 6.7735 1.9153 -2.2203 13 6 2.2431 2.0165 1.1671 14 8 2.6469 3.1601 1.1671 15 6 1.9914 1.3063 2.4722 16 6 2.1845 2.2860 3.6315 17 1 3.1799 2.7284 3.5902 18 6 1.1059 3.3890 3.5858 19 6 0.8501 3.6646 5.0828 20 1 -0.1992 3.9087 5.2485 21 6 1.7435 4.8059 5.5727 22 6 1.2080 2.3760 5.7918 23 6 1.9767 1.5832 4.9560 24 6 2.4230 0.3489 5.3965 25 6 2.1002 -0.0920 6.6718 26 6 1.3329 0.7014 7.5037 27 6 0.8885 1.9334 7.0642 28 6 0.0525 2.7980 7.9723 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0956 3.1411 -1.1384 36 1 3.6757 3.5176 -4.4432 37 1 2.6922 0.4779 2.5761 38 1 0.9712 0.9231 2.4865 39 1 0.2009 3.0260 3.0986 40 1 1.4814 4.2819 3.0861 41 1 1.5081 5.7149 5.0190 42 1 2.7892 4.5433 5.4123 43 1 1.5697 4.9728 6.6357 44 1 3.0222 -0.2706 4.7456 45 1 2.4487 -1.0552 7.0139 46 1 1.0816 0.3589 8.4967 47 1 -1.0024 2.5678 7.8233 48 1 0.3238 2.6037 9.0100 49 1 0.2315 3.8479 7.7404 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488743433.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:00 Heat of formation + Delta-G solvation = -35.414077 kcal Electronic energy + Delta-G solvation = -26775.793928 eV Core-core repulsion = 23280.483111 eV Total energy + Delta-G solvation = -3495.310817 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -40.64059 -38.92291 -36.32761 -35.17423 -33.71164 -32.78324 -31.21864 -30.05326 -29.53298 -27.76148 -27.08635 -26.10509 -24.25511 -22.98020 -22.33763 -21.89079 -20.51788 -19.41085 -18.13017 -16.56313 -16.35149 -16.07142 -15.65259 -15.32462 -15.15699 -14.78590 -14.37635 -14.03739 -13.83799 -13.56480 -13.34557 -13.29970 -12.90740 -12.65008 -12.60085 -12.56754 -12.17681 -12.01900 -11.96255 -11.93555 -11.77256 -11.44659 -11.22237 -11.07804 -10.95321 -10.87229 -10.72188 -10.61823 -10.59226 -10.50351 -10.29948 -10.10445 -9.60250 -8.85192 -8.57900 -8.48549 -8.41645 -7.60779 -6.02411 -4.06887 1.32599 1.35179 3.30782 3.37399 3.41268 3.51541 3.67557 3.99386 4.40827 4.45927 4.54915 4.82228 4.88046 4.99498 5.03060 5.16050 5.21873 5.25455 5.32695 5.34711 5.38388 5.43426 5.46345 5.51632 5.58436 5.61770 5.68793 5.72498 5.79326 5.84768 5.93449 5.94404 6.00410 6.05035 6.10140 6.22622 6.25689 6.26318 6.36315 6.42168 6.48416 6.52130 6.59181 6.71516 6.99194 7.11643 7.48234 7.60071 7.94627 8.26651 8.49188 8.93332 9.16434 9.58300 11.05590 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.018977 B = 0.003153 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.080521 B = 8876.914238 C = 9160.779759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.506 3.494 14 O -0.540 6.540 15 C -0.132 4.132 16 C -0.032 4.032 17 H 0.095 0.905 18 C -0.104 4.104 19 C -0.054 4.054 20 H 0.076 0.924 21 C -0.139 4.139 22 C -0.088 4.088 23 C -0.079 4.079 24 C -0.113 4.113 25 C -0.119 4.119 26 C -0.127 4.127 27 C -0.075 4.075 28 C -0.115 4.115 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.030 0.970 35 H 0.043 0.957 36 H 0.263 0.737 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.052 0.948 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.067 0.933 48 H 0.062 0.938 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.737 -5.447 21.020 23.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.331 5.331 4 C 0.127 3.873 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.292 3.708 14 O -0.418 6.418 15 C -0.172 4.172 16 C -0.050 4.050 17 H 0.113 0.887 18 C -0.142 4.142 19 C -0.072 4.072 20 H 0.094 0.906 21 C -0.196 4.196 22 C -0.088 4.088 23 C -0.079 4.079 24 C -0.131 4.131 25 C -0.137 4.137 26 C -0.145 4.145 27 C -0.075 4.075 28 C -0.171 4.171 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.108 0.892 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.086 0.914 48 H 0.081 0.919 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.529 -4.717 20.816 22.632 hybrid contribution 1.010 -0.474 -0.451 1.203 sum -6.519 -5.191 20.364 22.004 Atomic orbital electron populations 1.22222 0.96916 1.01335 1.02263 1.21387 0.93427 0.84361 1.02537 1.48259 1.63813 1.13182 1.07832 1.19236 0.96113 0.93624 0.78279 1.21448 0.96997 1.31701 1.06193 0.92547 1.24935 0.97794 0.94958 0.96444 1.69933 1.35679 1.33497 1.14340 0.86515 0.84789 0.77649 0.78584 1.20683 1.21105 1.19907 1.20287 0.78400 0.86986 0.85083 1.90647 1.45823 1.18066 1.87256 1.21786 1.03242 0.99134 0.93057 1.20431 1.01185 0.94242 0.89161 0.88704 1.22404 0.98099 0.99546 0.94127 1.20656 0.99768 0.92025 0.94759 0.90617 1.21761 1.00027 0.97312 1.00497 1.20482 0.98433 0.96434 0.93480 1.20729 0.96828 0.94093 0.96227 1.20790 1.00743 0.95518 0.96041 1.21110 0.98990 0.99655 0.93930 1.20861 0.99654 0.94259 0.99730 1.19402 0.99058 0.95233 0.93833 1.20792 0.98982 0.99253 0.98109 0.93066 0.92101 0.92268 0.90113 0.91793 0.95213 0.93937 0.92769 0.89568 0.89626 0.91455 0.89225 0.92020 0.92313 0.92882 0.86254 0.86154 0.86304 0.91413 0.91863 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.18 37.16 0.38 -1.92 16 2 C 0.11 1.73 5.85 -4.04 -0.02 1.71 16 3 N -0.60 -12.59 2.46 -175.06 -0.43 -13.02 16 4 C 0.25 6.46 5.16 -5.19 -0.03 6.43 16 5 C -0.52 -14.94 9.39 -34.44 -0.32 -15.26 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 9 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.51 10.31 7.39 -10.99 -0.08 10.23 16 14 O -0.54 -13.14 14.49 5.56 0.08 -13.06 16 15 C -0.13 -1.98 3.46 -27.89 -0.10 -2.08 16 16 C -0.03 -0.46 2.49 -90.74 -0.23 -0.69 16 17 H 0.09 1.55 7.94 -51.93 -0.41 1.13 16 18 C -0.10 -1.46 5.19 -25.32 -0.13 -1.60 16 19 C -0.05 -0.63 2.83 -90.74 -0.26 -0.89 16 20 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 21 C -0.14 -1.51 9.11 37.15 0.34 -1.18 16 22 C -0.09 -1.08 5.32 -104.12 -0.55 -1.63 16 23 C -0.08 -1.02 5.61 -104.12 -0.58 -1.61 16 24 C -0.11 -1.32 9.76 -39.31 -0.38 -1.70 16 25 C -0.12 -1.23 10.07 -39.41 -0.40 -1.62 16 26 C -0.13 -1.28 9.69 -39.63 -0.38 -1.67 16 27 C -0.08 -0.81 5.88 -104.58 -0.62 -1.43 16 28 C -0.11 -0.95 9.87 36.01 0.36 -0.60 16 29 H 0.05 0.67 7.12 -51.93 -0.37 0.30 16 30 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 33 H 0.06 0.87 6.60 -51.93 -0.34 0.52 16 34 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 35 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.09 1.18 7.32 -51.93 -0.38 0.80 16 38 H 0.09 1.15 6.80 -51.93 -0.35 0.80 16 39 H 0.07 0.94 7.86 -51.92 -0.41 0.53 16 40 H 0.09 1.41 7.40 -51.93 -0.38 1.03 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.50 6.92 -51.93 -0.36 0.14 16 44 H 0.12 1.26 7.77 -52.48 -0.41 0.85 16 45 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 46 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 49 H 0.07 0.54 6.43 -51.93 -0.33 0.21 16 LS Contribution 388.72 15.07 5.86 5.86 Total: -1.00 -32.51 388.72 -10.21 -42.72 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -8.32 Total: 0.40 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -3.11 Total: -13.86 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.31 Total: -39.04 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.08 Total: -13.06 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.51 -10.21 -42.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488743433.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.308 kcal (2) G-P(sol) polarization free energy of solvation -32.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds