Wall clock time and date at job start Tue Mar 31 2020 11:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47222 * 2 1 4 4 C 1.46507 * 119.99636 * 270.00218 * 3 2 1 5 5 C 1.50700 * 109.46832 * 269.99912 * 4 3 2 6 6 H 1.07997 * 120.00352 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99900 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00037 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99981 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47402 * 89.99759 * 9 7 5 11 11 H 1.48504 * 109.46927 * 210.00061 * 9 7 5 12 12 H 1.48500 * 109.46998 * 329.99742 * 9 7 5 13 13 C 1.34772 * 120.00120 * 90.00241 * 3 2 1 14 14 O 1.21282 * 120.00091 * 180.02562 * 13 3 2 15 15 C 1.50695 * 119.99896 * 359.97438 * 13 3 2 16 16 C 1.52999 * 109.47119 * 185.75772 * 15 13 3 17 17 H 1.09007 * 110.27049 * 303.80317 * 16 15 13 18 18 C 1.54343 * 110.30519 * 65.87760 * 16 15 13 19 19 C 1.54347 * 102.40009 * 145.37550 * 18 16 15 20 20 H 1.09000 * 110.30191 * 214.62269 * 19 18 16 21 21 C 1.52995 * 110.30269 * 92.56898 * 19 18 16 22 22 C 1.51370 * 105.25564 * 333.59635 * 19 18 16 23 23 C 1.38495 * 109.62348 * 17.23998 * 22 19 18 24 24 C 1.38455 * 119.81692 * 179.97438 * 23 22 19 25 25 C 1.38742 * 120.04717 * 0.02562 * 24 23 22 26 26 C 1.38204 * 120.00590 * 359.97438 * 25 24 23 27 27 C 1.38153 * 119.93493 * 359.97438 * 26 25 24 28 28 C 1.50699 * 119.89333 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.46828 * 300.00680 * 1 2 3 30 30 H 1.09010 * 109.46949 * 59.99769 * 1 2 3 31 31 H 1.08993 * 109.47389 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46548 * 239.99791 * 2 1 3 33 33 H 1.09000 * 109.46850 * 120.00093 * 2 1 3 34 34 H 1.08991 * 109.47168 * 30.00008 * 4 3 2 35 35 H 1.09006 * 109.46724 * 150.00308 * 4 3 2 36 36 H 0.97000 * 120.00200 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.46892 * 65.76288 * 15 13 3 38 38 H 1.08994 * 109.47357 * 305.76107 * 15 13 3 39 39 H 1.09007 * 110.81666 * 27.15094 * 18 16 15 40 40 H 1.08996 * 110.99382 * 263.68456 * 18 16 15 41 41 H 1.09007 * 109.47097 * 61.37682 * 21 19 18 42 42 H 1.09002 * 109.47267 * 301.37608 * 21 19 18 43 43 H 1.09001 * 109.47385 * 181.37181 * 21 19 18 44 44 H 1.08003 * 119.89239 * 179.97438 * 24 23 22 45 45 H 1.08001 * 119.96039 * 179.97438 * 25 24 23 46 46 H 1.08005 * 120.03537 * 180.02562 * 26 25 24 47 47 H 1.08995 * 109.47578 * 269.98192 * 28 27 26 48 48 H 1.09002 * 109.47039 * 29.98674 * 28 27 26 49 49 H 1.09004 * 109.46805 * 149.98065 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7039 6 1 4.3426 1.2301 -1.0963 7 6 4.1494 2.3903 -2.8776 8 7 3.3497 3.1272 -3.6173 9 14 5.9134 2.0961 -3.4173 10 1 5.9760 0.8756 -4.2608 11 1 6.3929 3.2637 -4.1996 12 1 6.7735 1.9153 -2.2203 13 6 2.2431 2.0165 1.1671 14 8 2.6469 3.1601 1.1671 15 6 1.9914 1.3063 2.4722 16 6 2.1845 2.2860 3.6315 17 1 3.1799 2.7284 3.5902 18 6 1.1059 3.3890 3.5858 19 6 0.8501 3.6646 5.0828 20 1 -0.1992 3.9087 5.2485 21 6 1.7435 4.8059 5.5727 22 6 1.2080 2.3760 5.7918 23 6 1.9767 1.5832 4.9560 24 6 2.4230 0.3489 5.3965 25 6 2.1002 -0.0920 6.6718 26 6 1.3329 0.7014 7.5037 27 6 0.8885 1.9334 7.0642 28 6 0.0525 2.7980 7.9723 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0956 3.1411 -1.1384 36 1 3.6757 3.5176 -4.4432 37 1 2.6922 0.4779 2.5761 38 1 0.9712 0.9231 2.4865 39 1 0.2009 3.0260 3.0986 40 1 1.4814 4.2819 3.0861 41 1 1.5081 5.7149 5.0190 42 1 2.7892 4.5433 5.4123 43 1 1.5697 4.9728 6.6357 44 1 3.0222 -0.2706 4.7456 45 1 2.4487 -1.0552 7.0139 46 1 1.0816 0.3589 8.4967 47 1 -1.0024 2.5678 7.8233 48 1 0.3238 2.6037 9.0100 49 1 0.2315 3.8479 7.7404 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488743433.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:57 Heat of formation + Delta-G solvation = -51.537894 kcal Electronic energy + Delta-G solvation = -26776.493109 eV Core-core repulsion = 23280.483111 eV Total energy + Delta-G solvation = -3496.009998 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.66181 -40.43916 -37.37755 -36.76060 -34.99237 -34.53615 -32.31343 -31.53621 -30.48191 -29.30724 -28.16522 -27.29174 -25.54028 -24.57922 -23.82349 -22.80195 -21.42598 -20.52313 -19.63105 -18.61624 -17.91237 -17.25352 -16.93227 -16.65198 -16.29614 -16.17349 -15.67559 -15.38778 -14.74399 -14.65281 -14.59141 -14.48882 -14.26710 -13.87115 -13.69643 -13.55837 -13.43182 -13.35630 -13.22588 -13.12695 -12.88486 -12.76886 -12.69334 -12.62372 -12.41886 -12.27848 -12.15515 -11.90638 -11.83959 -11.71426 -11.61383 -11.44761 -11.38058 -10.64794 -10.51764 -9.42243 -9.40336 -9.36831 -8.22795 -6.37758 0.50104 0.51074 1.34861 1.37988 1.48304 1.88947 2.31111 2.46360 2.86242 3.06290 3.44620 3.50830 3.85218 3.87388 4.04449 4.12407 4.14322 4.15672 4.25927 4.37391 4.40427 4.47547 4.50549 4.57488 4.61924 4.64327 4.75319 4.81423 4.85677 4.88576 4.93561 4.98414 5.01221 5.03461 5.06106 5.12634 5.17338 5.18293 5.23230 5.26069 5.38105 5.40739 5.47512 5.58487 5.65761 5.70510 5.85323 5.88076 6.07120 6.19080 6.70307 6.84028 7.28513 7.53347 8.84121 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.018977 B = 0.003153 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.080521 B = 8876.914238 C = 9160.779759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.264 3.736 5 C -0.542 4.542 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.497 3.503 14 O -0.590 6.590 15 C -0.115 4.115 16 C -0.028 4.028 17 H 0.066 0.934 18 C -0.106 4.106 19 C -0.047 4.047 20 H 0.089 0.911 21 C -0.136 4.136 22 C -0.101 4.101 23 C -0.096 4.096 24 C -0.123 4.123 25 C -0.119 4.119 26 C -0.127 4.127 27 C -0.081 4.081 28 C -0.114 4.114 29 H 0.058 0.942 30 H 0.038 0.962 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.019 0.981 35 H -0.004 1.004 36 H 0.267 0.733 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.040 0.960 43 H 0.071 0.929 44 H 0.128 0.872 45 H 0.146 0.854 46 H 0.146 0.854 47 H 0.076 0.924 48 H 0.079 0.921 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.978 -7.959 23.581 26.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.142 3.858 5 C -0.581 4.581 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.188 1.188 11 H -0.206 1.206 12 H -0.198 1.198 13 C 0.286 3.714 14 O -0.472 6.472 15 C -0.154 4.154 16 C -0.047 4.047 17 H 0.084 0.916 18 C -0.143 4.143 19 C -0.065 4.065 20 H 0.107 0.893 21 C -0.193 4.193 22 C -0.101 4.101 23 C -0.096 4.096 24 C -0.141 4.141 25 C -0.137 4.137 26 C -0.145 4.145 27 C -0.081 4.081 28 C -0.171 4.171 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.037 0.963 35 H 0.014 0.986 36 H 0.076 0.924 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.090 0.910 44 H 0.146 0.854 45 H 0.164 0.836 46 H 0.163 0.837 47 H 0.095 0.905 48 H 0.098 0.902 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.793 -7.275 23.392 25.707 hybrid contribution 1.051 0.307 -1.212 1.633 sum -6.742 -6.968 22.181 24.207 Atomic orbital electron populations 1.22151 0.94723 1.03442 1.01557 1.21716 0.95218 0.81524 1.03766 1.48301 1.64033 1.15040 1.06315 1.18658 0.95130 0.91466 0.80537 1.21719 0.97935 1.31886 1.06521 0.92972 1.25868 1.02409 0.94469 0.96452 1.70054 1.37809 1.34215 1.14802 0.85418 0.78990 0.78217 0.78202 1.18751 1.20622 1.19802 1.21275 0.77033 0.86607 0.86469 1.90621 1.47936 1.20514 1.88088 1.21733 1.05038 0.99066 0.89585 1.20286 0.99709 0.94373 0.90316 0.91626 1.22325 0.97751 0.98382 0.95872 1.20579 1.00581 0.92506 0.92845 0.89299 1.21737 0.98818 0.97089 1.01687 1.20552 0.98968 0.96239 0.94309 1.20584 0.98516 0.95183 0.95335 1.20992 1.00925 0.95120 0.97059 1.21443 0.98367 1.00659 0.93191 1.21246 0.98689 0.93714 1.00805 1.19725 0.99009 0.95939 0.93462 1.20840 0.99036 0.98747 0.98454 0.92297 0.94314 0.88653 0.91083 0.88316 0.96315 0.98631 0.92426 0.87483 0.87237 0.91604 0.92129 0.92035 0.94053 0.90964 0.85393 0.83635 0.83661 0.90523 0.90219 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.12 10.18 71.98 0.73 -3.39 16 2 C 0.10 3.13 5.85 86.38 0.51 3.64 16 3 N -0.61 -26.22 2.46 -826.15 -2.03 -28.25 16 4 C 0.26 14.58 5.16 85.63 0.44 15.02 16 5 C -0.54 -31.92 9.39 25.60 0.24 -31.68 16 6 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 7 C 0.01 0.40 5.46 84.66 0.46 0.86 16 8 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 9 Si 0.97 45.68 29.54 68.60 2.03 47.71 16 10 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 13 C 0.50 20.99 7.39 87.66 0.65 21.64 16 14 O -0.59 -30.74 14.49 -3.04 -0.04 -30.78 16 15 C -0.11 -3.39 3.46 29.85 0.10 -3.28 16 16 C -0.03 -0.84 2.49 -10.87 -0.03 -0.86 16 17 H 0.07 2.30 7.94 -2.38 -0.02 2.28 16 18 C -0.11 -3.11 5.19 31.51 0.16 -2.94 16 19 C -0.05 -1.09 2.83 -10.87 -0.03 -1.12 16 20 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 21 C -0.14 -3.00 9.11 71.98 0.66 -2.34 16 22 C -0.10 -2.32 5.32 -19.54 -0.10 -2.42 16 23 C -0.10 -2.39 5.61 -19.54 -0.11 -2.50 16 24 C -0.12 -2.60 9.76 22.44 0.22 -2.38 16 25 C -0.12 -2.05 10.07 22.38 0.23 -1.82 16 26 C -0.13 -2.10 9.69 22.24 0.22 -1.89 16 27 C -0.08 -1.54 5.88 -19.83 -0.12 -1.65 16 28 C -0.11 -1.54 9.87 71.24 0.70 -0.83 16 29 H 0.06 1.42 7.12 -2.39 -0.02 1.40 16 30 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 33 H 0.10 2.41 6.60 -2.39 -0.02 2.39 16 34 H 0.02 1.06 8.07 -2.39 -0.02 1.04 16 35 H 0.00 -0.28 7.42 -2.38 -0.02 -0.30 16 36 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 37 H 0.11 2.73 7.32 -2.39 -0.02 2.71 16 38 H 0.11 2.73 6.80 -2.39 -0.02 2.71 16 39 H 0.07 1.89 7.86 -2.38 -0.02 1.87 16 40 H 0.06 2.10 7.40 -2.39 -0.02 2.08 16 41 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.07 1.29 6.92 -2.39 -0.02 1.27 16 44 H 0.13 2.38 7.77 -2.91 -0.02 2.36 16 45 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 46 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 47 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.08 0.81 8.08 -2.39 -0.02 0.79 16 49 H 0.07 0.91 6.43 -2.39 -0.02 0.89 16 Total: -1.00 -74.84 388.72 6.08 -68.76 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.91 Total: 17.46 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 4.93 Total: -17.97 kcal Atomic # 7 Polarization: -83.43 SS G_CDS: -1.74 Total: -85.17 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.04 Total: -30.78 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -74.84 6.08 -68.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488743433.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.222 kcal (2) G-P(sol) polarization free energy of solvation -74.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds