Wall clock time and date at job start Tue Mar 31 2020 11:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37097 * 120.00400 * 2 1 4 4 H 1.07998 * 119.99889 * 200.79705 * 3 2 1 5 5 C 1.38945 * 119.99879 * 20.80108 * 3 2 1 6 6 N 1.31404 * 120.00045 * 15.27274 * 5 3 2 7 7 Si 1.86796 * 119.99843 * 195.27207 * 5 3 2 8 8 H 1.48504 * 109.47343 * 89.99964 * 7 5 3 9 9 H 1.48499 * 109.47220 * 209.99628 * 7 5 3 10 10 H 1.48498 * 109.47552 * 330.00121 * 7 5 3 11 11 C 1.34785 * 119.99630 * 179.97438 * 2 1 3 12 12 O 1.21291 * 119.99859 * 180.02562 * 11 2 1 13 13 C 1.50696 * 119.99799 * 0.27890 * 11 2 1 14 14 C 1.53003 * 109.46944 * 176.42282 * 13 11 2 15 15 C 1.52995 * 110.01649 * 296.41805 * 14 13 11 16 16 C 1.53002 * 109.47160 * 305.23558 * 15 14 13 17 17 C 1.50699 * 109.47181 * 180.80570 * 16 15 14 18 18 C 1.38234 * 119.99943 * 269.72474 * 17 16 15 19 19 C 1.38238 * 119.99966 * 179.76351 * 18 17 16 20 20 C 1.38234 * 119.99693 * 0.51374 * 19 18 17 21 21 C 1.38230 * 120.00279 * 359.73791 * 20 19 18 22 22 C 1.38234 * 119.99891 * 0.02562 * 21 20 19 23 23 C 1.54263 * 110.03095 * 175.02641 * 14 13 11 24 24 C 1.54971 * 104.15900 * 217.13204 * 23 14 13 25 25 C 1.54884 * 102.77422 * 37.89414 * 24 23 14 26 26 C 1.53878 * 110.03182 * 57.81093 * 14 13 11 27 27 H 1.08997 * 109.47014 * 270.44450 * 1 2 3 28 28 H 1.08999 * 109.46339 * 30.44348 * 1 2 3 29 29 H 1.08993 * 109.47315 * 150.44447 * 1 2 3 30 30 H 0.97001 * 120.00405 * 180.02562 * 6 5 3 31 31 H 1.09003 * 109.46859 * 296.41506 * 13 11 2 32 32 H 1.08994 * 109.47468 * 56.42315 * 13 11 2 33 33 H 1.09004 * 109.47011 * 65.23555 * 15 14 13 34 34 H 1.09002 * 109.47293 * 185.23523 * 15 14 13 35 35 H 1.09001 * 109.46814 * 300.80298 * 16 15 14 36 36 H 1.08998 * 109.46859 * 60.80305 * 16 15 14 37 37 H 1.08003 * 119.99860 * 359.97438 * 18 17 16 38 38 H 1.07999 * 119.99853 * 180.22660 * 19 18 17 39 39 H 1.08005 * 119.99623 * 179.72595 * 20 19 18 40 40 H 1.07997 * 119.99936 * 179.97438 * 21 20 19 41 41 H 1.08001 * 119.99765 * 179.97438 * 22 21 20 42 42 H 1.08998 * 110.49237 * 335.78021 * 23 14 13 43 43 H 1.09006 * 110.48550 * 98.43019 * 23 14 13 44 44 H 1.08994 * 110.72021 * 279.57592 * 24 23 14 45 45 H 1.09009 * 110.91948 * 156.29705 * 24 23 14 46 46 H 1.09008 * 110.48741 * 203.40191 * 25 24 23 47 47 H 1.09000 * 110.48956 * 80.76105 * 25 24 23 48 48 H 1.09006 * 110.02931 * 238.56902 * 26 14 13 49 49 H 1.08994 * 110.03637 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1872 0.0000 4 1 3.1778 1.2176 -0.3321 5 6 1.5238 2.3514 0.4273 6 7 0.3999 2.2819 1.1045 7 14 2.2790 4.0152 0.0391 8 1 1.7548 4.5056 -1.2609 9 1 1.9267 4.9809 1.1108 10 1 3.7558 3.8819 -0.0413 11 6 2.1388 -1.1673 0.0005 12 8 3.3518 -1.1674 0.0010 13 6 1.3853 -2.4723 -0.0052 14 6 2.3774 -3.6337 -0.0934 15 6 3.1387 -3.5727 -1.4191 16 6 2.1413 -3.5365 -2.5788 17 6 2.8912 -3.4964 -3.8853 18 6 3.2306 -2.2814 -4.4504 19 6 3.9228 -2.2446 -5.6464 20 6 4.2663 -3.4228 -6.2826 21 6 3.9224 -4.6377 -5.7201 22 6 3.2345 -4.6745 -4.5217 23 6 1.6294 -4.9777 0.0252 24 6 2.5890 -5.8742 0.8480 25 6 3.1832 -4.8834 1.8796 26 6 3.3651 -3.5737 1.0850 27 1 -0.3633 0.0080 1.0276 28 1 -0.3632 0.8860 -0.5207 29 1 -0.3633 -0.8939 -0.5069 30 1 -0.0379 3.0945 1.4026 31 1 0.8038 -2.5601 0.9125 32 1 0.7150 -2.5011 -0.8643 33 1 3.7559 -2.6746 -1.4426 34 1 3.7743 -4.4531 -1.5139 35 1 1.5145 -4.4278 -2.5468 36 1 1.5151 -2.6486 -2.4918 37 1 2.9579 -1.3608 -3.9557 38 1 4.1911 -1.2953 -6.0860 39 1 4.8033 -3.3939 -7.2192 40 1 4.1905 -5.5582 -6.2174 41 1 2.9655 -5.6238 -4.0825 42 1 0.6856 -4.8438 0.5536 43 1 1.4576 -5.4070 -0.9620 44 1 3.3726 -6.2859 0.2120 45 1 2.0416 -6.6723 1.3498 46 1 4.1445 -5.2444 2.2454 47 1 2.4905 -4.7340 2.7079 48 1 4.3870 -3.5020 0.7123 49 1 3.1381 -2.7170 1.7194 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000498183101.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:47 Heat of formation + Delta-G solvation = -27.631284 kcal Electronic energy + Delta-G solvation = -27315.160619 eV Core-core repulsion = 23820.187290 eV Total energy + Delta-G solvation = -3494.973329 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.88195 -38.88752 -37.45667 -34.58495 -33.82943 -31.68446 -31.02248 -30.75130 -28.59081 -28.04585 -26.42001 -25.61476 -23.91511 -23.13937 -22.42543 -21.05403 -20.08132 -19.22755 -17.62347 -16.79263 -16.66864 -15.92286 -15.57829 -15.33203 -14.90518 -14.67282 -14.36954 -14.20372 -13.92448 -13.38275 -13.24768 -13.21557 -13.02741 -12.65231 -12.46634 -12.17783 -11.87234 -11.65202 -11.45021 -11.31969 -11.10182 -11.06220 -10.94410 -10.87484 -10.77101 -10.65690 -10.56984 -10.31360 -10.27993 -10.25002 -10.13179 -9.85096 -9.75404 -8.96046 -8.79616 -8.48402 -8.14671 -7.60804 -6.27565 -3.80334 1.49502 1.52805 3.18252 3.27125 3.32295 3.91695 3.99867 4.17595 4.76047 4.89799 4.92550 4.98362 5.04673 5.11063 5.16934 5.19461 5.25792 5.45605 5.56440 5.62156 5.65407 5.72540 5.77729 5.80548 5.85153 5.94412 5.95206 6.01372 6.09744 6.13599 6.13880 6.21056 6.23202 6.25012 6.34625 6.41448 6.52294 6.55657 6.59890 6.64549 6.66957 6.78643 6.89369 6.91136 6.94174 7.07682 7.16036 7.24291 7.61549 8.19760 8.55531 9.26513 9.51439 10.08769 10.76960 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.009852 B = 0.004798 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.470008 B = 5834.819981 C = 7952.193478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.451 5.451 3 C -0.303 4.303 4 H 0.098 0.902 5 C 0.029 3.971 6 N -0.883 5.883 7 Si 0.921 3.079 8 H -0.279 1.279 9 H -0.285 1.285 10 H -0.270 1.270 11 C 0.450 3.550 12 O -0.581 6.581 13 C -0.124 4.124 14 C -0.035 4.035 15 C -0.100 4.100 16 C -0.087 4.087 17 C -0.069 4.069 18 C -0.112 4.112 19 C -0.118 4.118 20 C -0.133 4.133 21 C -0.124 4.124 22 C -0.122 4.122 23 C -0.120 4.120 24 C -0.122 4.122 25 C -0.130 4.130 26 C -0.096 4.096 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.025 0.975 30 H 0.266 0.734 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.125 0.875 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.059 0.941 48 H 0.064 0.936 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.587 -14.196 -7.589 16.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.171 5.171 3 C -0.431 4.431 4 H 0.116 0.884 5 C -0.174 4.174 6 N -0.523 5.523 7 Si 0.748 3.252 8 H -0.205 1.205 9 H -0.211 1.211 10 H -0.194 1.194 11 C 0.238 3.762 12 O -0.466 6.466 13 C -0.164 4.164 14 C -0.036 4.036 15 C -0.137 4.137 16 C -0.124 4.124 17 C -0.069 4.069 18 C -0.130 4.130 19 C -0.136 4.136 20 C -0.151 4.151 21 C -0.142 4.142 22 C -0.140 4.140 23 C -0.157 4.157 24 C -0.159 4.159 25 C -0.168 4.168 26 C -0.134 4.134 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.143 0.857 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.082 0.918 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.037 -14.021 -7.498 15.934 hybrid contribution 0.025 1.033 -0.087 1.037 sum 1.062 -12.988 -7.585 15.078 Atomic orbital electron populations 1.21453 0.81498 0.98919 1.01209 1.43634 1.05302 1.04956 1.63167 1.19634 0.98637 0.83612 1.41237 0.88412 1.25269 0.96652 0.99863 0.95580 1.70018 1.18582 1.28908 1.34809 0.86002 0.79594 0.81630 0.77945 1.20493 1.21077 1.19448 1.20031 0.88159 0.84691 0.83324 1.90475 1.13827 1.86952 1.55327 1.21798 0.98416 0.93956 1.02252 1.20824 0.94550 0.92648 0.95542 1.21723 0.97409 1.03211 0.91403 1.20825 0.97747 1.02557 0.91223 1.20019 0.97749 0.92939 0.96168 1.21218 0.98219 0.98050 0.95507 1.21158 0.98593 0.98127 0.95743 1.21069 1.01207 0.92754 1.00107 1.21065 0.99305 0.97620 0.96195 1.21019 0.99656 0.97720 0.95644 1.22581 0.98191 0.95217 0.99736 1.22460 0.98583 0.97259 0.97634 1.22463 1.00017 0.96372 0.97925 1.22098 0.99298 0.96209 0.95772 0.92855 0.91360 0.95616 0.92420 0.90724 0.90641 0.89044 0.92946 0.91425 0.90742 0.85720 0.86303 0.86609 0.86575 0.86439 0.91783 0.91721 0.91951 0.92369 0.92453 0.92225 0.91757 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.51 8.54 59.85 0.51 3.02 16 2 N -0.45 -11.31 3.02 -122.20 -0.37 -11.68 16 3 C -0.30 -8.36 9.30 -14.94 -0.14 -8.50 16 4 H 0.10 2.83 7.40 -52.49 -0.39 2.45 16 5 C 0.03 0.77 5.02 -17.47 -0.09 0.68 16 6 N -0.88 -23.64 10.74 55.50 0.60 -23.05 16 7 Si 0.92 20.87 29.58 -169.99 -5.03 15.84 16 8 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 C 0.45 10.35 6.75 -10.98 -0.07 10.27 16 12 O -0.58 -14.82 12.12 5.55 0.07 -14.75 16 13 C -0.12 -2.18 2.82 -27.88 -0.08 -2.26 16 14 C -0.04 -0.55 0.38 -153.39 -0.06 -0.60 16 15 C -0.10 -1.58 3.66 -26.73 -0.10 -1.68 16 16 C -0.09 -1.23 4.67 -27.88 -0.13 -1.36 16 17 C -0.07 -0.98 5.13 -104.63 -0.54 -1.52 16 18 C -0.11 -1.67 9.70 -39.58 -0.38 -2.05 16 19 C -0.12 -1.55 10.05 -39.58 -0.40 -1.95 16 20 C -0.13 -1.58 10.05 -39.59 -0.40 -1.97 16 21 C -0.12 -1.44 10.05 -39.59 -0.40 -1.83 16 22 C -0.12 -1.54 9.70 -39.58 -0.38 -1.92 16 23 C -0.12 -1.50 5.74 -25.03 -0.14 -1.64 16 24 C -0.12 -1.43 6.91 -24.70 -0.17 -1.60 16 25 C -0.13 -1.74 6.83 -25.07 -0.17 -1.91 16 26 C -0.10 -1.61 4.63 -25.61 -0.12 -1.73 16 27 H 0.05 1.23 7.66 -51.93 -0.40 0.84 16 28 H 0.07 1.60 6.93 -51.93 -0.36 1.24 16 29 H 0.03 0.47 6.32 -51.93 -0.33 0.14 16 30 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 31 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 32 H 0.08 1.22 5.29 -51.93 -0.27 0.94 16 33 H 0.09 1.79 6.11 -51.93 -0.32 1.47 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.83 6.39 -51.93 -0.33 0.50 16 36 H 0.07 1.16 6.30 -51.93 -0.33 0.83 16 37 H 0.12 1.98 8.06 -52.48 -0.42 1.56 16 38 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 39 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 40 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 41 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 42 H 0.06 0.78 7.81 -51.93 -0.41 0.37 16 43 H 0.06 0.74 6.18 -51.93 -0.32 0.42 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 46 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 47 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.06 1.15 7.67 -51.93 -0.40 0.75 16 49 H 0.07 1.37 6.68 -51.93 -0.35 1.02 16 LS Contribution 374.85 15.07 5.65 5.65 Total: -1.00 -29.43 374.85 -10.32 -39.76 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -7.98 Total: 6.81 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -3.26 Total: -18.57 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.23 Total: -34.73 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: 0.07 Total: -14.75 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.43 -10.32 -39.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000498183101.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.126 kcal (2) G-P(sol) polarization free energy of solvation -29.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds