Wall clock time and date at job start Tue Mar 31 2020 11:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37097 * 120.00400 * 2 1 4 4 H 1.07998 * 119.99889 * 200.79705 * 3 2 1 5 5 C 1.38945 * 119.99879 * 20.80108 * 3 2 1 6 6 N 1.31404 * 120.00045 * 15.27274 * 5 3 2 7 7 Si 1.86796 * 119.99843 * 195.27207 * 5 3 2 8 8 H 1.48504 * 109.47343 * 89.99964 * 7 5 3 9 9 H 1.48499 * 109.47220 * 209.99628 * 7 5 3 10 10 H 1.48498 * 109.47552 * 330.00121 * 7 5 3 11 11 C 1.34785 * 119.99630 * 179.97438 * 2 1 3 12 12 O 1.21291 * 119.99859 * 180.02562 * 11 2 1 13 13 C 1.50696 * 119.99799 * 0.27890 * 11 2 1 14 14 C 1.53003 * 109.46944 * 176.42282 * 13 11 2 15 15 C 1.52995 * 110.01649 * 296.41805 * 14 13 11 16 16 C 1.53002 * 109.47160 * 305.23558 * 15 14 13 17 17 C 1.50699 * 109.47181 * 180.80570 * 16 15 14 18 18 C 1.38234 * 119.99943 * 269.72474 * 17 16 15 19 19 C 1.38238 * 119.99966 * 179.76351 * 18 17 16 20 20 C 1.38234 * 119.99693 * 0.51374 * 19 18 17 21 21 C 1.38230 * 120.00279 * 359.73791 * 20 19 18 22 22 C 1.38234 * 119.99891 * 0.02562 * 21 20 19 23 23 C 1.54263 * 110.03095 * 175.02641 * 14 13 11 24 24 C 1.54971 * 104.15900 * 217.13204 * 23 14 13 25 25 C 1.54884 * 102.77422 * 37.89414 * 24 23 14 26 26 C 1.53878 * 110.03182 * 57.81093 * 14 13 11 27 27 H 1.08997 * 109.47014 * 270.44450 * 1 2 3 28 28 H 1.08999 * 109.46339 * 30.44348 * 1 2 3 29 29 H 1.08993 * 109.47315 * 150.44447 * 1 2 3 30 30 H 0.97001 * 120.00405 * 180.02562 * 6 5 3 31 31 H 1.09003 * 109.46859 * 296.41506 * 13 11 2 32 32 H 1.08994 * 109.47468 * 56.42315 * 13 11 2 33 33 H 1.09004 * 109.47011 * 65.23555 * 15 14 13 34 34 H 1.09002 * 109.47293 * 185.23523 * 15 14 13 35 35 H 1.09001 * 109.46814 * 300.80298 * 16 15 14 36 36 H 1.08998 * 109.46859 * 60.80305 * 16 15 14 37 37 H 1.08003 * 119.99860 * 359.97438 * 18 17 16 38 38 H 1.07999 * 119.99853 * 180.22660 * 19 18 17 39 39 H 1.08005 * 119.99623 * 179.72595 * 20 19 18 40 40 H 1.07997 * 119.99936 * 179.97438 * 21 20 19 41 41 H 1.08001 * 119.99765 * 179.97438 * 22 21 20 42 42 H 1.08998 * 110.49237 * 335.78021 * 23 14 13 43 43 H 1.09006 * 110.48550 * 98.43019 * 23 14 13 44 44 H 1.08994 * 110.72021 * 279.57592 * 24 23 14 45 45 H 1.09009 * 110.91948 * 156.29705 * 24 23 14 46 46 H 1.09008 * 110.48741 * 203.40191 * 25 24 23 47 47 H 1.09000 * 110.48956 * 80.76105 * 25 24 23 48 48 H 1.09006 * 110.02931 * 238.56902 * 26 14 13 49 49 H 1.08994 * 110.03637 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1872 0.0000 4 1 3.1778 1.2176 -0.3321 5 6 1.5238 2.3514 0.4273 6 7 0.3999 2.2819 1.1045 7 14 2.2790 4.0152 0.0391 8 1 1.7548 4.5056 -1.2609 9 1 1.9267 4.9809 1.1108 10 1 3.7558 3.8819 -0.0413 11 6 2.1388 -1.1673 0.0005 12 8 3.3518 -1.1674 0.0010 13 6 1.3853 -2.4723 -0.0052 14 6 2.3774 -3.6337 -0.0934 15 6 3.1387 -3.5727 -1.4191 16 6 2.1413 -3.5365 -2.5788 17 6 2.8912 -3.4964 -3.8853 18 6 3.2306 -2.2814 -4.4504 19 6 3.9228 -2.2446 -5.6464 20 6 4.2663 -3.4228 -6.2826 21 6 3.9224 -4.6377 -5.7201 22 6 3.2345 -4.6745 -4.5217 23 6 1.6294 -4.9777 0.0252 24 6 2.5890 -5.8742 0.8480 25 6 3.1832 -4.8834 1.8796 26 6 3.3651 -3.5737 1.0850 27 1 -0.3633 0.0080 1.0276 28 1 -0.3632 0.8860 -0.5207 29 1 -0.3633 -0.8939 -0.5069 30 1 -0.0379 3.0945 1.4026 31 1 0.8038 -2.5601 0.9125 32 1 0.7150 -2.5011 -0.8643 33 1 3.7559 -2.6746 -1.4426 34 1 3.7743 -4.4531 -1.5139 35 1 1.5145 -4.4278 -2.5468 36 1 1.5151 -2.6486 -2.4918 37 1 2.9579 -1.3608 -3.9557 38 1 4.1911 -1.2953 -6.0860 39 1 4.8033 -3.3939 -7.2192 40 1 4.1905 -5.5582 -6.2174 41 1 2.9655 -5.6238 -4.0825 42 1 0.6856 -4.8438 0.5536 43 1 1.4576 -5.4070 -0.9620 44 1 3.3726 -6.2859 0.2120 45 1 2.0416 -6.6723 1.3498 46 1 4.1445 -5.2444 2.2454 47 1 2.4905 -4.7340 2.7079 48 1 4.3870 -3.5020 0.7123 49 1 3.1381 -2.7170 1.7194 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000498183101.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:44 Heat of formation + Delta-G solvation = -40.768794 kcal Electronic energy + Delta-G solvation = -27315.730305 eV Core-core repulsion = 23820.187290 eV Total energy + Delta-G solvation = -3495.543015 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -41.28631 -40.02362 -39.01121 -36.51090 -34.95126 -33.65424 -32.29610 -31.73238 -29.83918 -29.29737 -28.15210 -27.10853 -25.71818 -24.29657 -23.41571 -22.10028 -21.32297 -20.77471 -19.03372 -18.81404 -17.73761 -17.62765 -16.80217 -16.63120 -16.27605 -16.04846 -15.83479 -15.70635 -15.48677 -14.68343 -14.47505 -14.31326 -14.19649 -14.03389 -13.66883 -13.62614 -13.41289 -13.20343 -13.13038 -12.98846 -12.66873 -12.43044 -12.31226 -12.26899 -12.15290 -11.97445 -11.85713 -11.79963 -11.65394 -11.40556 -11.28993 -11.13518 -11.09464 -10.95063 -10.03060 -9.79257 -9.61136 -9.50588 -8.31417 -5.92041 0.49932 0.52717 1.34883 1.37849 1.49632 2.14672 2.28133 2.91270 3.12144 3.16813 3.73523 3.77594 3.80350 3.99255 4.06908 4.19884 4.24769 4.30452 4.33800 4.42104 4.47595 4.53325 4.60236 4.66745 4.67933 4.74109 4.77629 4.84214 4.86166 4.92174 4.96686 5.02285 5.09162 5.15071 5.19721 5.22765 5.22897 5.36139 5.37533 5.40280 5.45294 5.47269 5.57431 5.61281 5.63611 5.64803 5.74816 5.84737 6.14511 6.17992 6.54638 7.24053 7.57192 8.15875 8.71360 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.009852 B = 0.004798 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.470008 B = 5834.819981 C = 7952.193478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.473 5.473 3 C -0.337 4.337 4 H 0.068 0.932 5 C -0.004 4.004 6 N -0.899 5.899 7 Si 0.982 3.018 8 H -0.267 1.267 9 H -0.274 1.274 10 H -0.278 1.278 11 C 0.444 3.556 12 O -0.613 6.613 13 C -0.114 4.114 14 C -0.035 4.035 15 C -0.090 4.090 16 C -0.078 4.078 17 C -0.086 4.086 18 C -0.143 4.143 19 C -0.131 4.131 20 C -0.134 4.134 21 C -0.121 4.121 22 C -0.124 4.124 23 C -0.112 4.112 24 C -0.114 4.114 25 C -0.126 4.126 26 C -0.097 4.097 27 H 0.040 0.960 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.271 0.729 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.041 0.959 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.052 0.948 37 H 0.095 0.905 38 H 0.127 0.873 39 H 0.144 0.856 40 H 0.150 0.850 41 H 0.143 0.857 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.084 0.916 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.040 0.960 49 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.356 -17.264 -8.801 19.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.194 5.194 3 C -0.465 4.465 4 H 0.086 0.914 5 C -0.205 4.205 6 N -0.538 5.538 7 Si 0.806 3.194 8 H -0.192 1.192 9 H -0.199 1.199 10 H -0.203 1.203 11 C 0.235 3.765 12 O -0.499 6.499 13 C -0.153 4.153 14 C -0.035 4.035 15 C -0.128 4.128 16 C -0.115 4.115 17 C -0.086 4.086 18 C -0.161 4.161 19 C -0.149 4.149 20 C -0.152 4.152 21 C -0.139 4.139 22 C -0.142 4.142 23 C -0.149 4.149 24 C -0.151 4.151 25 C -0.163 4.163 26 C -0.135 4.135 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.071 0.929 37 H 0.113 0.887 38 H 0.145 0.855 39 H 0.162 0.838 40 H 0.167 0.833 41 H 0.161 0.839 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.088 0.912 45 H 0.102 0.898 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.059 0.941 49 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 0.072 -17.098 -8.706 19.188 hybrid contribution 0.420 1.988 0.279 2.051 sum 0.491 -15.110 -8.427 17.308 Atomic orbital electron populations 1.21357 0.79880 0.99982 1.00612 1.43904 1.06449 1.04923 1.64078 1.19528 0.98151 0.85722 1.43122 0.91440 1.25961 0.97108 1.02518 0.94930 1.70088 1.19134 1.29920 1.34690 0.85105 0.78226 0.77661 0.78398 1.19211 1.19908 1.20318 1.21047 0.88174 0.86044 0.81279 1.90459 1.15717 1.87748 1.56007 1.21801 0.98680 0.91366 1.03491 1.20873 0.94079 0.93880 0.94692 1.21543 0.97457 1.01279 0.92475 1.20736 0.97264 1.02852 0.90633 1.20099 0.98601 0.93394 0.96458 1.21191 1.00375 0.97642 0.96886 1.21350 0.98602 0.99573 0.95360 1.21433 1.00613 0.92235 1.00883 1.21502 0.97920 0.98764 0.95712 1.21319 0.99169 0.97799 0.95882 1.22558 0.98245 0.92754 1.01373 1.22451 0.98647 0.97046 0.96944 1.22434 1.00896 0.94826 0.98193 1.22027 0.98412 0.96798 0.96258 0.94118 0.93183 0.91581 0.91953 0.89727 0.88551 0.94011 0.91648 0.88387 0.92891 0.88685 0.85528 0.83849 0.83273 0.83882 0.90672 0.89582 0.91221 0.89785 0.91686 0.91811 0.94086 0.95363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.66 8.54 127.77 1.09 6.75 16 2 N -0.47 -24.90 3.02 -658.91 -1.99 -26.89 16 3 C -0.34 -19.68 9.30 84.04 0.78 -18.89 16 4 H 0.07 4.24 7.40 -2.91 -0.02 4.22 16 5 C 0.00 -0.22 5.02 84.93 0.43 0.20 16 6 N -0.90 -49.07 10.74 21.66 0.23 -48.84 16 7 Si 0.98 43.98 29.58 68.60 2.03 46.01 16 8 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 9 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 C 0.44 21.56 6.75 87.65 0.59 22.15 16 12 O -0.61 -33.77 12.12 -3.06 -0.04 -33.81 16 13 C -0.11 -4.00 2.82 29.85 0.08 -3.91 16 14 C -0.03 -1.06 0.38 -51.46 -0.02 -1.08 16 15 C -0.09 -2.86 3.66 30.59 0.11 -2.75 16 16 C -0.08 -2.15 4.67 29.85 0.14 -2.01 16 17 C -0.09 -2.40 5.13 -19.87 -0.10 -2.51 16 18 C -0.14 -4.50 9.70 22.27 0.22 -4.28 16 19 C -0.13 -3.48 10.05 22.27 0.22 -3.25 16 20 C -0.13 -2.88 10.05 22.27 0.22 -2.66 16 21 C -0.12 -2.42 10.05 22.27 0.22 -2.20 16 22 C -0.12 -2.77 9.70 22.27 0.22 -2.56 16 23 C -0.11 -2.40 5.74 31.70 0.18 -2.22 16 24 C -0.11 -2.23 6.91 31.91 0.22 -2.01 16 25 C -0.13 -3.18 6.83 31.67 0.22 -2.96 16 26 C -0.10 -3.35 4.63 31.32 0.15 -3.20 16 27 H 0.04 1.91 7.66 -2.39 -0.02 1.89 16 28 H 0.05 2.41 6.93 -2.39 -0.02 2.39 16 29 H 0.07 2.38 6.32 -2.39 -0.02 2.37 16 30 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 31 H 0.08 2.83 8.07 -2.39 -0.02 2.81 16 32 H 0.10 3.00 5.29 -2.39 -0.01 2.99 16 33 H 0.04 1.75 6.11 -2.38 -0.01 1.73 16 34 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.10 2.08 6.39 -2.39 -0.02 2.06 16 36 H 0.05 1.67 6.30 -2.39 -0.02 1.65 16 37 H 0.09 3.42 8.06 -2.91 -0.02 3.40 16 38 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 39 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 40 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 41 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 42 H 0.07 1.49 7.81 -2.39 -0.02 1.48 16 43 H 0.09 1.52 6.18 -2.38 -0.01 1.51 16 44 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 46 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 47 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.04 1.55 7.67 -2.38 -0.02 1.53 16 49 H 0.03 1.17 6.68 -2.39 -0.02 1.15 16 Total: -1.00 -69.45 374.85 6.13 -63.32 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: 0.92 Total: 27.59 kcal Atomic # 6 Polarization: -32.36 SS G_CDS: 4.97 Total: -27.39 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -1.76 Total: -75.73 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -0.04 Total: -33.81 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -69.45 6.13 -63.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000498183101.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.556 kcal (2) G-P(sol) polarization free energy of solvation -69.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds