Wall clock time and date at job start Tue Mar 31 2020 11:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47356 * 2 1 4 4 C 1.53001 * 109.47427 * 120.00196 * 2 1 3 5 5 C 1.50704 * 109.46844 * 64.99465 * 4 2 1 6 6 C 1.38256 * 120.00022 * 270.02400 * 5 4 2 7 7 C 1.38216 * 119.99654 * 179.97438 * 6 5 4 8 8 C 1.38251 * 120.00105 * 359.74290 * 7 6 5 9 9 C 1.38217 * 120.00033 * 0.51052 * 8 7 6 10 10 C 1.50699 * 120.00360 * 179.76067 * 9 8 7 11 11 H 1.09000 * 109.47570 * 179.72434 * 10 9 8 12 12 C 1.53008 * 109.46951 * 59.72756 * 10 9 8 13 13 C 1.50701 * 109.47237 * 299.73294 * 10 9 8 14 14 O 1.21292 * 120.00113 * 7.86948 * 13 10 9 15 15 N 1.34780 * 119.99923 * 187.87747 * 13 10 9 16 16 C 1.37096 * 119.99989 * 185.12929 * 15 13 10 17 17 H 1.08003 * 120.00043 * 324.99495 * 16 15 13 18 18 C 1.38952 * 120.00300 * 144.99165 * 16 15 13 19 19 N 1.31418 * 119.99483 * 4.00315 * 18 16 15 20 20 Si 1.86799 * 120.00302 * 184.00417 * 18 16 15 21 21 H 1.48500 * 109.46862 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47072 * 119.99968 * 20 18 16 23 23 H 1.48491 * 109.47165 * 240.00224 * 20 18 16 24 24 C 1.46500 * 120.00163 * 5.12413 * 15 13 10 25 25 C 1.52997 * 117.49977 * 132.51222 * 24 15 13 26 26 C 1.52997 * 117.49675 * 63.88545 * 24 15 13 27 27 C 1.38217 * 119.99607 * 90.00801 * 5 4 2 28 28 H 1.08997 * 109.47683 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47680 * 300.00245 * 1 2 3 30 30 H 1.09007 * 109.47647 * 59.99749 * 1 2 3 31 31 H 1.09001 * 109.46824 * 240.00078 * 2 1 3 32 32 H 1.08997 * 109.47318 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.47136 * 300.00166 * 3 2 1 34 34 H 1.08996 * 109.47262 * 59.99535 * 3 2 1 35 35 H 1.09001 * 109.46513 * 304.99860 * 4 2 1 36 36 H 1.08990 * 109.47198 * 184.99970 * 4 2 1 37 37 H 1.07993 * 120.00149 * 0.02562 * 6 5 4 38 38 H 1.08002 * 119.99359 * 180.02562 * 7 6 5 39 39 H 1.08003 * 120.00379 * 180.27408 * 8 7 6 40 40 H 1.09004 * 109.46452 * 54.58748 * 12 10 9 41 41 H 1.08988 * 109.47139 * 174.59368 * 12 10 9 42 42 H 1.09002 * 109.47184 * 294.59853 * 12 10 9 43 43 H 0.97003 * 119.99379 * 185.00178 * 19 18 16 44 44 H 1.09010 * 115.54609 * 278.22562 * 24 15 13 45 45 H 1.08994 * 117.49877 * 359.97438 * 25 24 15 46 46 H 1.08999 * 117.49770 * 145.02360 * 25 24 15 47 47 H 1.09003 * 117.50358 * 214.97641 * 26 24 15 48 48 H 1.08994 * 117.50323 * 359.97438 * 26 24 15 49 49 H 1.08001 * 119.99763 * 359.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6412 -2.1733 1.1888 6 6 0.4350 -2.5819 1.7270 7 6 0.0691 -3.9136 1.6711 8 6 0.9068 -4.8361 1.0723 9 6 2.1150 -4.4285 0.5389 10 6 3.0306 -5.4349 -0.1090 11 1 3.9259 -4.9306 -0.4724 12 6 2.3083 -6.1002 -1.2824 13 6 3.4195 -6.4835 0.9010 14 8 2.8866 -6.5035 1.9904 15 7 4.3598 -7.3991 0.5939 16 6 4.6389 -8.4156 1.4704 17 1 4.5955 -8.2380 2.5349 18 6 4.9775 -9.6745 0.9894 19 7 5.1072 -9.8707 -0.3035 20 14 5.2484 -11.0877 2.1805 21 1 5.0428 -10.6092 3.5712 22 1 4.2831 -12.1766 1.8844 23 1 6.6340 -11.6008 2.0328 24 6 5.0834 -7.3081 -0.6766 25 6 6.6064 -7.4476 -0.6338 26 6 5.9704 -6.0813 -0.8981 27 6 2.4812 -3.0965 0.5950 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 3.1299 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6054 -0.2617 2.1369 36 1 3.1262 -0.6444 1.2951 37 1 -0.2216 -1.8605 2.1903 38 1 -0.8733 -4.2326 2.0912 39 1 0.6189 -5.8760 1.0247 40 1 1.9426 -5.3336 -1.9656 41 1 3.0001 -6.7569 -1.8097 42 1 1.4674 -6.6839 -0.9077 43 1 5.2719 -10.7639 -0.6443 44 1 4.5643 -7.7170 -1.5436 45 1 7.0700 -7.6066 0.3397 46 1 7.0897 -7.9485 -1.4726 47 1 6.0354 -5.6833 -1.9108 48 1 6.0152 -5.3417 -0.0987 49 1 3.4231 -2.7771 0.1740 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000506767416.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:51 Heat of formation + Delta-G solvation = -0.604544 kcal Electronic energy + Delta-G solvation = -26931.134753 eV Core-core repulsion = 23437.333391 eV Total energy + Delta-G solvation = -3493.801362 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -39.76922 -38.58198 -36.49292 -35.81646 -33.54587 -32.78842 -31.16495 -30.96424 -29.14626 -27.25584 -26.27355 -25.29040 -23.85368 -22.06348 -21.63500 -21.29132 -20.65045 -19.95076 -18.33692 -16.82697 -16.21786 -15.86643 -15.32895 -15.08704 -14.88910 -14.57411 -14.34059 -14.20121 -13.90509 -13.47112 -13.33813 -13.07560 -12.94732 -12.43219 -12.31115 -12.17328 -12.09190 -11.92437 -11.67280 -11.61509 -11.27927 -11.20394 -11.04835 -10.91709 -10.84960 -10.75375 -10.66437 -10.53933 -10.41778 -10.30930 -10.19780 -9.60640 -9.34140 -8.77689 -8.50449 -8.16284 -8.11567 -7.55248 -6.26794 -3.92144 1.78072 1.80582 3.18399 3.28075 3.34632 3.92943 4.07562 4.22354 4.72003 4.76217 4.78096 4.85985 4.91089 5.09417 5.13536 5.26843 5.29407 5.46650 5.48123 5.54435 5.59192 5.65292 5.71082 5.76345 5.81350 5.82444 5.85204 5.89912 5.94098 5.96921 6.00818 6.03840 6.18926 6.21355 6.26368 6.27565 6.32966 6.39409 6.46712 6.50142 6.64627 6.80355 6.91240 6.92352 6.98105 7.15853 7.22856 7.42994 7.60237 8.25397 8.55547 9.23357 9.44423 10.03484 10.79453 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.021579 B = 0.003337 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.222970 B = 8389.941750 C = 9013.005646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.072 4.072 5 C -0.089 4.089 6 C -0.125 4.125 7 C -0.125 4.125 8 C -0.080 4.080 9 C -0.046 4.046 10 C -0.071 4.071 11 H 0.092 0.908 12 C -0.135 4.135 13 C 0.473 3.527 14 O -0.573 6.573 15 N -0.426 5.426 16 C -0.308 4.308 17 H 0.091 0.909 18 C 0.043 3.957 19 N -0.874 5.874 20 Si 0.917 3.083 21 H -0.269 1.269 22 H -0.281 1.281 23 H -0.283 1.283 24 C 0.135 3.865 25 C -0.135 4.135 26 C -0.232 4.232 27 C -0.115 4.115 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.054 0.946 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.265 0.735 44 H 0.106 0.894 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.082 0.918 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.000 15.531 -4.156 16.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.110 4.110 3 C -0.204 4.204 4 C -0.110 4.110 5 C -0.089 4.089 6 C -0.143 4.143 7 C -0.143 4.143 8 C -0.098 4.098 9 C -0.047 4.047 10 C -0.092 4.092 11 H 0.110 0.890 12 C -0.192 4.192 13 C 0.261 3.739 14 O -0.456 6.456 15 N -0.145 5.145 16 C -0.435 4.435 17 H 0.108 0.892 18 C -0.161 4.161 19 N -0.512 5.512 20 Si 0.744 3.256 21 H -0.194 1.194 22 H -0.207 1.207 23 H -0.209 1.209 24 C 0.029 3.971 25 C -0.173 4.173 26 C -0.270 4.270 27 C -0.133 4.133 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.138 0.862 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.123 0.877 45 H 0.107 0.893 46 H 0.102 0.898 47 H 0.104 0.896 48 H 0.101 0.899 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.135 15.344 -3.721 16.603 hybrid contribution 0.321 -0.984 0.462 1.134 sum -4.814 14.360 -3.260 15.492 Atomic orbital electron populations 1.21909 0.95287 1.02364 1.01102 1.21080 0.96075 0.95559 0.98277 1.21854 1.00938 0.96104 1.01540 1.20621 1.00895 0.91539 0.97926 1.19642 0.94965 0.94912 0.99416 1.20855 0.96455 0.95698 1.01305 1.21047 0.99742 0.93272 1.00239 1.20953 0.93462 0.99279 0.96105 1.19507 0.94549 0.93158 0.97474 1.20292 0.98040 0.94981 0.95923 0.89022 1.21728 1.00725 1.00279 0.96484 1.19926 0.81146 0.84414 0.88451 1.90539 1.55773 1.75187 1.24137 1.42982 1.30995 1.24296 1.16241 1.19479 1.46130 0.87987 0.89952 0.89171 1.25347 0.96297 0.98228 0.96197 1.69877 1.47445 1.22106 1.11771 0.86016 0.77630 0.81136 0.80864 1.19355 1.20721 1.20894 1.21158 0.90389 0.96471 0.89052 1.22632 0.96816 0.95802 1.02055 1.23578 1.09381 0.92820 1.01212 1.20837 0.99309 0.92447 1.00745 0.91854 0.92998 0.93182 0.91072 0.92727 0.92839 0.92819 0.91405 0.91294 0.86957 0.86711 0.86238 0.92681 0.91171 0.92508 0.92467 0.87690 0.89343 0.89798 0.89580 0.89949 0.86743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.76 37.15 0.33 -1.06 16 2 C -0.09 -0.88 2.91 -90.63 -0.26 -1.14 16 3 C -0.15 -1.18 9.19 37.16 0.34 -0.84 16 4 C -0.07 -0.79 4.84 -27.88 -0.13 -0.93 16 5 C -0.09 -1.24 4.71 -104.62 -0.49 -1.73 16 6 C -0.13 -1.73 7.96 -39.58 -0.32 -2.05 16 7 C -0.12 -1.92 10.05 -39.58 -0.40 -2.32 16 8 C -0.08 -1.44 7.91 -39.58 -0.31 -1.75 16 9 C -0.05 -0.83 4.47 -104.62 -0.47 -1.30 16 10 C -0.07 -1.33 2.18 -92.92 -0.20 -1.53 16 11 H 0.09 1.61 5.67 -51.93 -0.29 1.31 16 12 C -0.13 -2.28 8.74 37.16 0.32 -1.95 16 13 C 0.47 11.40 6.74 -10.98 -0.07 11.32 16 14 O -0.57 -15.75 14.68 5.55 0.08 -15.67 16 15 N -0.43 -10.63 2.91 -107.73 -0.31 -10.94 16 16 C -0.31 -8.46 8.61 -14.93 -0.13 -8.59 16 17 H 0.09 2.64 7.59 -52.48 -0.40 2.24 16 18 C 0.04 1.13 5.18 -17.46 -0.09 1.04 16 19 N -0.87 -22.56 10.62 55.50 0.59 -21.97 16 20 Si 0.92 20.85 29.56 -169.99 -5.02 15.82 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 C 0.13 2.91 2.55 -67.93 -0.17 2.73 16 25 C -0.14 -2.77 8.83 -26.73 -0.24 -3.00 16 26 C -0.23 -4.15 8.56 -26.73 -0.23 -4.38 16 27 C -0.12 -1.81 9.33 -39.58 -0.37 -2.18 16 28 H 0.06 0.66 6.27 -51.93 -0.33 0.34 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 36 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 37 H 0.11 1.29 8.04 -52.49 -0.42 0.87 16 38 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 39 H 0.12 2.29 7.40 -52.48 -0.39 1.90 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 1.21 5.67 -51.94 -0.29 0.91 16 42 H 0.06 1.00 7.57 -51.93 -0.39 0.61 16 43 H 0.26 6.56 8.32 -40.82 -0.34 6.22 16 44 H 0.11 2.32 6.60 -51.92 -0.34 1.98 16 45 H 0.09 1.97 7.98 -51.93 -0.41 1.56 16 46 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 47 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 48 H 0.08 1.50 7.87 -51.93 -0.41 1.09 16 49 H 0.11 1.62 7.95 -52.49 -0.42 1.20 16 LS Contribution 385.02 15.07 5.80 5.80 Total: -1.00 -29.63 385.02 -10.06 -39.69 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -8.30 Total: 6.90 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -2.90 Total: -19.63 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.28 Total: -32.92 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.08 Total: -15.67 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.63 -10.06 -39.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000506767416.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.088 kcal (2) G-P(sol) polarization free energy of solvation -29.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds