Wall clock time and date at job start Tue Mar 31 2020 11:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47356 * 2 1 4 4 C 1.53001 * 109.47427 * 120.00196 * 2 1 3 5 5 C 1.50704 * 109.46844 * 64.99465 * 4 2 1 6 6 C 1.38256 * 120.00022 * 270.02400 * 5 4 2 7 7 C 1.38216 * 119.99654 * 179.97438 * 6 5 4 8 8 C 1.38251 * 120.00105 * 359.74290 * 7 6 5 9 9 C 1.38217 * 120.00033 * 0.51052 * 8 7 6 10 10 C 1.50699 * 120.00360 * 179.76067 * 9 8 7 11 11 H 1.09000 * 109.47570 * 179.72434 * 10 9 8 12 12 C 1.53008 * 109.46951 * 59.72756 * 10 9 8 13 13 C 1.50701 * 109.47237 * 299.73294 * 10 9 8 14 14 O 1.21292 * 120.00113 * 7.86948 * 13 10 9 15 15 N 1.34780 * 119.99923 * 187.87747 * 13 10 9 16 16 C 1.37096 * 119.99989 * 185.12929 * 15 13 10 17 17 H 1.08003 * 120.00043 * 324.99495 * 16 15 13 18 18 C 1.38952 * 120.00300 * 144.99165 * 16 15 13 19 19 N 1.31418 * 119.99483 * 4.00315 * 18 16 15 20 20 Si 1.86799 * 120.00302 * 184.00417 * 18 16 15 21 21 H 1.48500 * 109.46862 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47072 * 119.99968 * 20 18 16 23 23 H 1.48491 * 109.47165 * 240.00224 * 20 18 16 24 24 C 1.46500 * 120.00163 * 5.12413 * 15 13 10 25 25 C 1.52997 * 117.49977 * 132.51222 * 24 15 13 26 26 C 1.52997 * 117.49675 * 63.88545 * 24 15 13 27 27 C 1.38217 * 119.99607 * 90.00801 * 5 4 2 28 28 H 1.08997 * 109.47683 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47680 * 300.00245 * 1 2 3 30 30 H 1.09007 * 109.47647 * 59.99749 * 1 2 3 31 31 H 1.09001 * 109.46824 * 240.00078 * 2 1 3 32 32 H 1.08997 * 109.47318 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.47136 * 300.00166 * 3 2 1 34 34 H 1.08996 * 109.47262 * 59.99535 * 3 2 1 35 35 H 1.09001 * 109.46513 * 304.99860 * 4 2 1 36 36 H 1.08990 * 109.47198 * 184.99970 * 4 2 1 37 37 H 1.07993 * 120.00149 * 0.02562 * 6 5 4 38 38 H 1.08002 * 119.99359 * 180.02562 * 7 6 5 39 39 H 1.08003 * 120.00379 * 180.27408 * 8 7 6 40 40 H 1.09004 * 109.46452 * 54.58748 * 12 10 9 41 41 H 1.08988 * 109.47139 * 174.59368 * 12 10 9 42 42 H 1.09002 * 109.47184 * 294.59853 * 12 10 9 43 43 H 0.97003 * 119.99379 * 185.00178 * 19 18 16 44 44 H 1.09010 * 115.54609 * 278.22562 * 24 15 13 45 45 H 1.08994 * 117.49877 * 359.97438 * 25 24 15 46 46 H 1.08999 * 117.49770 * 145.02360 * 25 24 15 47 47 H 1.09003 * 117.50358 * 214.97641 * 26 24 15 48 48 H 1.08994 * 117.50323 * 359.97438 * 26 24 15 49 49 H 1.08001 * 119.99763 * 359.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6412 -2.1733 1.1888 6 6 0.4350 -2.5819 1.7270 7 6 0.0691 -3.9136 1.6711 8 6 0.9068 -4.8361 1.0723 9 6 2.1150 -4.4285 0.5389 10 6 3.0306 -5.4349 -0.1090 11 1 3.9259 -4.9306 -0.4724 12 6 2.3083 -6.1002 -1.2824 13 6 3.4195 -6.4835 0.9010 14 8 2.8866 -6.5035 1.9904 15 7 4.3598 -7.3991 0.5939 16 6 4.6389 -8.4156 1.4704 17 1 4.5955 -8.2380 2.5349 18 6 4.9775 -9.6745 0.9894 19 7 5.1072 -9.8707 -0.3035 20 14 5.2484 -11.0877 2.1805 21 1 5.0428 -10.6092 3.5712 22 1 4.2831 -12.1766 1.8844 23 1 6.6340 -11.6008 2.0328 24 6 5.0834 -7.3081 -0.6766 25 6 6.6064 -7.4476 -0.6338 26 6 5.9704 -6.0813 -0.8981 27 6 2.4812 -3.0965 0.5950 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 3.1299 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6054 -0.2617 2.1369 36 1 3.1262 -0.6444 1.2951 37 1 -0.2216 -1.8605 2.1903 38 1 -0.8733 -4.2326 2.0912 39 1 0.6189 -5.8760 1.0247 40 1 1.9426 -5.3336 -1.9656 41 1 3.0001 -6.7569 -1.8097 42 1 1.4674 -6.6839 -0.9077 43 1 5.2719 -10.7639 -0.6443 44 1 4.5643 -7.7170 -1.5436 45 1 7.0700 -7.6066 0.3397 46 1 7.0897 -7.9485 -1.4726 47 1 6.0354 -5.6833 -1.9108 48 1 6.0152 -5.3417 -0.0987 49 1 3.4231 -2.7771 0.1740 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000506767416.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:49 Heat of formation + Delta-G solvation = -13.645367 kcal Electronic energy + Delta-G solvation = -26931.700245 eV Core-core repulsion = 23437.333391 eV Total energy + Delta-G solvation = -3494.366855 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.24401 -40.04199 -37.94329 -37.07059 -35.14159 -34.49535 -32.94159 -32.17345 -30.43853 -27.93791 -27.31137 -27.11577 -25.38003 -23.44302 -23.03166 -22.87954 -22.08190 -20.87410 -19.90115 -18.72880 -17.64582 -17.35442 -16.91728 -16.44552 -16.40349 -15.87361 -15.58803 -15.51396 -15.12826 -14.93880 -14.74346 -14.46066 -14.24444 -13.77272 -13.53465 -13.36879 -13.28632 -13.06987 -12.95171 -12.88899 -12.74374 -12.71543 -12.53950 -12.35027 -12.20811 -12.14106 -12.04966 -11.76163 -11.65287 -11.43941 -11.38693 -11.32060 -11.03461 -10.63497 -10.16514 -9.57880 -9.49889 -9.34166 -8.27088 -5.99712 0.55198 0.59861 1.34170 1.38547 1.50183 2.08367 2.28347 2.85288 3.03216 3.11111 3.25488 3.76460 3.85074 3.97420 4.09405 4.16370 4.19935 4.24944 4.29669 4.32914 4.40790 4.44220 4.46287 4.60379 4.65868 4.70137 4.82712 4.84467 4.85203 4.90014 4.93394 4.97895 5.03566 5.11860 5.14037 5.16144 5.23178 5.26785 5.28021 5.41130 5.42767 5.46409 5.51438 5.54325 5.55297 5.67909 5.79659 5.88037 6.18490 6.24852 6.60771 7.23450 7.52343 8.11351 8.76216 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.021579 B = 0.003337 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.222970 B = 8389.941750 C = 9013.005646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 C -0.144 4.144 4 C -0.070 4.070 5 C -0.083 4.083 6 C -0.120 4.120 7 C -0.131 4.131 8 C -0.107 4.107 9 C -0.069 4.069 10 C -0.056 4.056 11 H 0.108 0.892 12 C -0.127 4.127 13 C 0.460 3.540 14 O -0.620 6.620 15 N -0.437 5.437 16 C -0.342 4.342 17 H 0.056 0.944 18 C 0.016 3.984 19 N -0.878 5.878 20 Si 0.972 3.028 21 H -0.281 1.281 22 H -0.275 1.275 23 H -0.268 1.268 24 C 0.112 3.888 25 C -0.143 4.143 26 C -0.190 4.190 27 C -0.123 4.123 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.142 0.858 38 H 0.131 0.869 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.037 0.963 43 H 0.270 0.730 44 H 0.100 0.900 45 H 0.062 0.938 46 H 0.097 0.903 47 H 0.128 0.872 48 H 0.080 0.920 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.768 17.927 -5.395 19.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 C -0.201 4.201 4 C -0.108 4.108 5 C -0.083 4.083 6 C -0.138 4.138 7 C -0.148 4.148 8 C -0.125 4.125 9 C -0.069 4.069 10 C -0.078 4.078 11 H 0.126 0.874 12 C -0.185 4.185 13 C 0.250 3.750 14 O -0.506 6.506 15 N -0.155 5.155 16 C -0.470 4.470 17 H 0.074 0.926 18 C -0.188 4.188 19 N -0.515 5.515 20 Si 0.797 3.203 21 H -0.206 1.206 22 H -0.201 1.201 23 H -0.193 1.193 24 C 0.008 3.992 25 C -0.181 4.181 26 C -0.228 4.228 27 C -0.141 4.141 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.159 0.841 38 H 0.149 0.851 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.056 0.944 43 H 0.080 0.920 44 H 0.118 0.882 45 H 0.080 0.920 46 H 0.115 0.885 47 H 0.146 0.854 48 H 0.099 0.901 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.883 17.740 -5.002 19.068 hybrid contribution 0.216 -1.697 0.874 1.921 sum -4.667 16.043 -4.128 17.210 Atomic orbital electron populations 1.21904 0.95028 1.01675 1.02020 1.21048 0.96258 0.96310 0.97081 1.21822 1.01103 0.94949 1.02245 1.20686 1.01374 0.89491 0.99211 1.20017 0.94357 0.96297 0.97640 1.21191 0.96803 0.95378 1.00412 1.21280 1.00070 0.93758 0.99736 1.20886 0.94772 0.98559 0.98311 1.19542 0.94524 0.94019 0.98847 1.20183 0.99073 0.93660 0.94839 0.87380 1.21683 0.99773 1.00816 0.96190 1.20900 0.80228 0.85070 0.88839 1.90488 1.57141 1.76608 1.26412 1.43172 1.31620 1.23908 1.16850 1.19313 1.48433 0.89983 0.89243 0.92568 1.25894 0.95610 0.99466 0.97789 1.69934 1.46566 1.22699 1.12312 0.85208 0.78232 0.78479 0.78431 1.20608 1.20069 1.19317 1.21162 0.90594 1.00095 0.87366 1.22581 0.95839 0.98375 1.01259 1.23614 1.04608 0.91154 1.03376 1.21052 1.00304 0.91718 1.01028 0.93267 0.92042 0.92413 0.91899 0.92490 0.92141 0.92150 0.90159 0.90834 0.84072 0.85066 0.89066 0.89465 0.91505 0.94365 0.91997 0.88249 0.91956 0.88494 0.85384 0.90105 0.85165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.76 71.98 0.63 -1.70 16 2 C -0.09 -1.43 2.91 -10.80 -0.03 -1.46 16 3 C -0.14 -1.84 9.19 71.98 0.66 -1.18 16 4 C -0.07 -1.33 4.84 29.85 0.14 -1.18 16 5 C -0.08 -2.13 4.71 -19.86 -0.09 -2.23 16 6 C -0.12 -3.10 7.96 22.27 0.18 -2.92 16 7 C -0.13 -3.98 10.05 22.27 0.22 -3.76 16 8 C -0.11 -3.99 7.91 22.27 0.18 -3.81 16 9 C -0.07 -2.49 4.47 -19.87 -0.09 -2.58 16 10 C -0.06 -2.14 2.18 -12.28 -0.03 -2.16 16 11 H 0.11 3.65 5.67 -2.39 -0.01 3.64 16 12 C -0.13 -4.30 8.74 71.98 0.63 -3.67 16 13 C 0.46 23.13 6.74 87.66 0.59 23.73 16 14 O -0.62 -36.23 14.68 -3.07 -0.05 -36.27 16 15 N -0.44 -22.61 2.91 -613.12 -1.78 -24.40 16 16 C -0.34 -19.70 8.61 84.04 0.72 -18.98 16 17 H 0.06 3.54 7.59 -2.91 -0.02 3.52 16 18 C 0.02 0.85 5.18 84.93 0.44 1.29 16 19 N -0.88 -45.63 10.62 21.66 0.23 -45.40 16 20 Si 0.97 43.65 29.56 68.60 2.03 45.67 16 21 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 22 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 C 0.11 4.85 2.55 44.99 0.11 4.96 16 25 C -0.14 -5.76 8.83 30.60 0.27 -5.49 16 26 C -0.19 -6.40 8.56 30.60 0.26 -6.14 16 27 C -0.12 -3.70 9.33 22.27 0.21 -3.49 16 28 H 0.05 0.91 6.27 -2.39 -0.01 0.89 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.08 1.34 8.09 -2.39 -0.02 1.32 16 36 H 0.07 1.34 8.08 -2.39 -0.02 1.33 16 37 H 0.14 2.80 8.04 -2.91 -0.02 2.77 16 38 H 0.13 3.42 8.06 -2.91 -0.02 3.40 16 39 H 0.09 3.81 7.40 -2.91 -0.02 3.79 16 40 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 41 H 0.07 2.28 5.67 -2.39 -0.01 2.27 16 42 H 0.04 1.40 7.57 -2.39 -0.02 1.38 16 43 H 0.27 13.27 8.32 -92.71 -0.77 12.50 16 44 H 0.10 4.38 6.60 -2.38 -0.02 4.37 16 45 H 0.06 2.83 7.98 -2.39 -0.02 2.81 16 46 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 47 H 0.13 3.30 8.14 -2.39 -0.02 3.28 16 48 H 0.08 2.79 7.87 -2.39 -0.02 2.77 16 49 H 0.13 3.40 7.95 -2.91 -0.02 3.38 16 Total: -1.00 -67.77 385.02 6.35 -61.43 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: 0.91 Total: 29.75 kcal Atomic # 6 Polarization: -35.79 SS G_CDS: 5.01 Total: -30.78 kcal Atomic # 7 Polarization: -68.24 SS G_CDS: -1.55 Total: -69.79 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -0.05 Total: -36.27 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -67.77 6.35 -61.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000506767416.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.781 kcal (2) G-P(sol) polarization free energy of solvation -67.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds