Wall clock time and date at job start Tue Mar 31 2020 11:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47551 * 2 1 4 4 C 1.53005 * 109.47276 * 120.00167 * 2 1 3 5 5 C 1.52997 * 109.46673 * 292.74094 * 4 2 1 6 6 C 1.52999 * 109.47578 * 297.03224 * 5 4 2 7 7 C 1.52993 * 109.47296 * 180.02562 * 6 5 4 8 8 C 1.53007 * 109.47306 * 60.00203 * 7 6 5 9 9 C 1.52999 * 109.46778 * 300.00114 * 8 7 6 10 10 C 1.52995 * 109.47477 * 59.99543 * 9 8 7 11 11 C 1.50707 * 109.47300 * 239.99995 * 2 1 3 12 12 O 1.21280 * 120.00274 * 240.00206 * 11 2 1 13 13 N 1.34771 * 119.99812 * 59.99859 * 11 2 1 14 14 C 1.39237 * 119.99942 * 175.19120 * 13 11 2 15 15 C 1.39487 * 119.83336 * 215.90814 * 14 13 11 16 16 C 1.36379 * 120.16359 * 179.71839 * 15 14 13 17 17 C 1.40868 * 119.83206 * 0.57961 * 16 15 14 18 18 C 1.41142 * 120.16546 * 179.67687 * 17 16 15 19 19 H 1.08001 * 120.00409 * 160.67548 * 18 17 16 20 20 C 1.39908 * 119.99895 * 340.67605 * 18 17 16 21 21 N 1.30868 * 120.00038 * 330.24474 * 20 18 17 22 22 Si 1.86804 * 119.99867 * 150.25012 * 20 18 17 23 23 H 1.48494 * 109.47298 * 94.98665 * 22 20 18 24 24 H 1.48505 * 109.46880 * 214.98937 * 22 20 18 25 25 H 1.48498 * 109.47183 * 334.98368 * 22 20 18 26 26 C 1.40877 * 119.66885 * 359.69989 * 17 16 15 27 27 C 1.36366 * 119.82837 * 359.97438 * 26 17 16 28 28 H 1.08999 * 109.47013 * 186.15243 * 1 2 3 29 29 H 1.08994 * 109.47298 * 306.15491 * 1 2 3 30 30 H 1.09000 * 109.47262 * 66.15617 * 1 2 3 31 31 H 1.08997 * 109.46914 * 172.73887 * 4 2 1 32 32 H 1.08997 * 109.46781 * 52.74006 * 4 2 1 33 33 H 1.08998 * 109.47443 * 57.03770 * 5 4 2 34 34 H 1.09003 * 109.46976 * 59.99719 * 6 5 4 35 35 H 1.09009 * 109.46812 * 300.00355 * 6 5 4 36 36 H 1.09000 * 109.47589 * 299.99843 * 7 6 5 37 37 H 1.09004 * 109.46831 * 179.97438 * 7 6 5 38 38 H 1.08998 * 109.46761 * 59.99754 * 8 7 6 39 39 H 1.09001 * 109.46950 * 179.97438 * 8 7 6 40 40 H 1.08997 * 109.47005 * 179.97438 * 9 8 7 41 41 H 1.09009 * 109.46812 * 299.99735 * 9 8 7 42 42 H 1.08997 * 109.47509 * 179.97438 * 10 9 8 43 43 H 1.09009 * 109.46943 * 60.00272 * 10 9 8 44 44 H 0.97001 * 120.00100 * 355.19620 * 13 11 2 45 45 H 1.07993 * 119.91291 * 0.02562 * 15 14 13 46 46 H 1.08003 * 120.08034 * 180.25640 * 16 15 14 47 47 H 0.97007 * 120.00071 * 180.02562 * 21 20 18 48 48 H 1.08001 * 120.07998 * 179.97438 * 26 17 16 49 49 H 1.08000 * 119.91683 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6842 0.0975 2.4917 6 6 2.3972 1.4500 2.4327 7 6 2.0419 2.2684 3.6755 8 6 2.4866 1.5118 4.9289 9 6 1.7737 0.1593 4.9879 10 6 2.1289 -0.6591 3.7450 11 6 2.0323 -0.7104 -1.2305 12 8 2.7296 -1.6965 -1.1193 13 7 1.7067 -0.2500 -2.4545 14 6 2.2512 -0.8448 -3.5896 15 6 2.5741 -0.0605 -4.6970 16 6 3.1130 -0.6352 -5.8102 17 6 3.3321 -2.0264 -5.8443 18 6 3.8831 -2.6295 -6.9953 19 1 4.3370 -3.6072 -6.9280 20 6 3.8413 -1.9608 -8.2235 21 7 2.8645 -1.1295 -8.4831 22 14 5.1799 -2.2547 -9.4930 23 1 4.7345 -3.3001 -10.4490 24 1 5.4496 -0.9934 -10.2289 25 1 6.4196 -2.7042 -8.8102 26 6 2.9980 -2.8126 -4.7242 27 6 2.4660 -2.2227 -3.6157 28 1 -0.3633 -1.0217 0.1101 29 1 -0.3633 0.6062 0.8297 30 1 -0.3634 0.4154 -0.9399 31 1 3.1222 -0.8351 1.1866 32 1 1.5745 -1.7046 1.3165 33 1 0.6064 0.2561 2.5261 34 1 2.0807 1.9888 1.5396 35 1 3.4751 1.2913 2.3985 36 1 0.9640 2.4272 3.7103 37 1 2.5502 3.2318 3.6337 38 1 3.5644 1.3532 4.8941 39 1 2.2339 2.0952 5.8143 40 1 2.0908 -0.3799 5.8805 41 1 0.6958 0.3181 5.0226 42 1 1.6214 -1.6228 3.7873 43 1 3.2068 -0.8178 3.7104 44 1 1.0931 0.4959 -2.5448 45 1 2.4014 1.0052 -4.6709 46 1 3.3663 -0.0261 -6.6653 47 1 2.8353 -0.6661 -9.3348 48 1 3.1627 -3.8798 -4.7433 49 1 2.2097 -2.8241 -2.7560 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000510099737.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:33 Heat of formation + Delta-G solvation = -60.281297 kcal Electronic energy + Delta-G solvation = -25783.578427 eV Core-core repulsion = 22287.189287 eV Total energy + Delta-G solvation = -3496.389140 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -40.01078 -38.84092 -37.26591 -34.82921 -34.38652 -32.99604 -31.11610 -30.76117 -29.51723 -28.83850 -26.36397 -25.26783 -23.60742 -22.77123 -21.68301 -20.99970 -20.34301 -19.78513 -19.06633 -17.39051 -16.95866 -16.27134 -15.48530 -15.31511 -15.13954 -14.59282 -14.37676 -14.20872 -13.95993 -13.85174 -13.46383 -13.24646 -12.84082 -12.69098 -12.40802 -12.33323 -12.08463 -12.05407 -11.93082 -11.82965 -11.39305 -11.35918 -11.30237 -11.11726 -11.05584 -10.93943 -10.81935 -10.52459 -10.49367 -10.19465 -10.12794 -10.05320 -9.67747 -9.37669 -8.96159 -8.62771 -7.51874 -7.09662 -6.86590 -4.25534 2.61599 2.99212 3.05174 3.13155 3.13441 3.41378 3.80729 3.89635 4.46338 4.48802 4.53558 4.57129 4.83735 4.92171 4.99686 5.08235 5.14552 5.24410 5.32664 5.33905 5.35492 5.43868 5.51065 5.61707 5.72907 5.76185 5.79961 5.83859 5.86520 5.94123 5.96189 6.02399 6.07971 6.10899 6.19451 6.22277 6.32789 6.43601 6.48562 6.82023 6.98976 7.02282 7.19823 7.32884 7.60274 7.75108 7.93711 8.04864 8.28287 8.36268 8.57950 8.83786 8.86483 9.04345 10.04467 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.034728 B = 0.002190 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.068369 B =12780.412941 C =12872.858365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 H 0.095 0.905 4 C -0.094 4.094 5 C -0.087 4.087 6 C -0.119 4.119 7 C -0.119 4.119 8 C -0.120 4.120 9 C -0.119 4.119 10 C -0.115 4.115 11 C 0.500 3.500 12 O -0.535 6.535 13 N -0.650 5.650 14 C -0.020 4.020 15 C -0.106 4.106 16 C -0.170 4.170 17 C 0.109 3.891 18 C -0.461 4.461 19 H 0.081 0.919 20 C 0.084 3.916 21 N -0.774 5.774 22 Si 0.899 3.101 23 H -0.270 1.270 24 H -0.274 1.274 25 H -0.258 1.258 26 C -0.226 4.226 27 C -0.069 4.069 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.393 0.607 45 H 0.088 0.912 46 H 0.113 0.887 47 H 0.282 0.718 48 H 0.093 0.907 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.551 7.622 19.255 21.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.132 4.132 3 H 0.113 0.887 4 C -0.132 4.132 5 C -0.105 4.105 6 C -0.156 4.156 7 C -0.157 4.157 8 C -0.158 4.158 9 C -0.156 4.156 10 C -0.152 4.152 11 C 0.287 3.713 12 O -0.412 6.412 13 N -0.293 5.293 14 C -0.112 4.112 15 C -0.126 4.126 16 C -0.190 4.190 17 C 0.106 3.894 18 C -0.489 4.489 19 H 0.099 0.901 20 C -0.137 4.137 21 N -0.397 5.397 22 Si 0.723 3.277 23 H -0.195 1.195 24 H -0.199 1.199 25 H -0.181 1.181 26 C -0.246 4.246 27 C -0.088 4.088 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.226 0.774 45 H 0.106 0.894 46 H 0.131 0.869 47 H 0.093 0.907 48 H 0.112 0.888 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.158 7.076 19.165 20.848 hybrid contribution 0.209 0.407 -0.811 0.931 sum -3.949 7.482 18.354 20.210 Atomic orbital electron populations 1.21819 0.93433 1.02722 1.02192 1.21368 0.97205 1.00934 0.93737 0.88712 1.21434 1.02126 0.98353 0.91276 1.21211 1.00191 0.94840 0.94284 1.21676 1.00709 0.95628 0.97577 1.21533 1.01030 0.98297 0.94796 1.21542 1.00374 0.96199 0.97658 1.21528 1.00316 0.95944 0.97842 1.21575 1.01472 0.98304 0.93884 1.20582 0.80838 0.85361 0.84507 1.90662 1.38245 1.25823 1.86471 1.42986 1.46043 1.35341 1.04911 1.17113 1.14068 0.92102 0.87918 1.20183 1.01614 0.96665 0.94131 1.20724 1.05939 0.95051 0.97264 1.17614 0.88185 0.91581 0.92002 1.19536 1.33330 1.03915 0.92121 0.90122 1.25961 0.94875 0.93376 0.99457 1.69930 1.25686 1.20769 1.23319 0.86455 0.82483 0.78856 0.79951 1.19479 1.19902 1.18145 1.20598 1.10316 0.97909 0.95746 1.20352 0.98910 0.92492 0.97080 0.92062 0.91658 0.92295 0.91003 0.91374 0.91050 0.91739 0.91889 0.92162 0.92264 0.92081 0.92422 0.92293 0.92169 0.91998 0.91915 0.77388 0.89372 0.86914 0.90670 0.88837 0.87731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.80 37.15 0.33 -1.10 16 2 C -0.11 -1.34 2.59 -91.77 -0.24 -1.57 16 3 H 0.09 1.01 6.17 -51.93 -0.32 0.69 16 4 C -0.09 -1.10 3.55 -26.73 -0.09 -1.19 16 5 C -0.09 -0.78 2.07 -90.62 -0.19 -0.96 16 6 C -0.12 -1.01 4.93 -26.73 -0.13 -1.14 16 7 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 8 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 9 C -0.12 -0.88 5.92 -26.73 -0.16 -1.03 16 10 C -0.11 -0.98 5.20 -26.73 -0.14 -1.12 16 11 C 0.50 8.73 6.98 -10.98 -0.08 8.65 16 12 O -0.53 -11.58 13.33 5.56 0.07 -11.50 16 13 N -0.65 -11.68 5.20 -9.74 -0.05 -11.73 16 14 C -0.02 -0.45 6.29 -83.57 -0.53 -0.98 16 15 C -0.11 -2.46 9.90 -39.79 -0.39 -2.86 16 16 C -0.17 -4.42 8.73 -39.26 -0.34 -4.76 16 17 C 0.11 2.96 5.60 -106.80 -0.60 2.36 16 18 C -0.46 -12.33 8.97 -37.86 -0.34 -12.67 16 19 H 0.08 2.09 8.00 -52.49 -0.42 1.67 16 20 C 0.08 2.10 4.88 -17.34 -0.08 2.01 16 21 N -0.77 -19.64 11.40 55.55 0.63 -19.00 16 22 Si 0.90 18.38 29.65 -169.99 -5.04 13.34 16 23 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 25 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 26 C -0.23 -5.87 9.74 -39.26 -0.38 -6.25 16 27 C -0.07 -1.69 8.61 -39.79 -0.34 -2.03 16 28 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 29 H 0.06 0.52 6.87 -51.93 -0.36 0.16 16 30 H 0.06 0.56 7.30 -51.93 -0.38 0.18 16 31 H 0.07 0.97 7.87 -51.93 -0.41 0.56 16 32 H 0.07 0.86 8.12 -51.93 -0.42 0.43 16 33 H 0.07 0.60 6.65 -51.93 -0.35 0.26 16 34 H 0.06 0.54 6.35 -51.93 -0.33 0.21 16 35 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 44 H 0.39 5.66 8.03 -40.82 -0.33 5.33 16 45 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 46 H 0.11 2.97 6.23 -52.48 -0.33 2.64 16 47 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 48 H 0.09 2.32 8.06 -52.49 -0.42 1.89 16 49 H 0.10 2.56 6.27 -52.49 -0.33 2.23 16 LS Contribution 379.21 15.07 5.71 5.71 Total: -1.00 -29.64 379.21 -10.87 -40.51 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -8.17 Total: 9.39 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -4.03 Total: -26.72 kcal Atomic # 7 Polarization: -31.32 SS G_CDS: 0.58 Total: -30.73 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.07 Total: -11.50 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.04 Total: 13.34 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.64 -10.87 -40.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000510099737.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.773 kcal (2) G-P(sol) polarization free energy of solvation -29.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds