Wall clock time and date at job start Tue Mar 31 2020 11:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47551 * 2 1 4 4 C 1.53005 * 109.47276 * 120.00167 * 2 1 3 5 5 C 1.52997 * 109.46673 * 292.74094 * 4 2 1 6 6 C 1.52999 * 109.47578 * 297.03224 * 5 4 2 7 7 C 1.52993 * 109.47296 * 180.02562 * 6 5 4 8 8 C 1.53007 * 109.47306 * 60.00203 * 7 6 5 9 9 C 1.52999 * 109.46778 * 300.00114 * 8 7 6 10 10 C 1.52995 * 109.47477 * 59.99543 * 9 8 7 11 11 C 1.50707 * 109.47300 * 239.99995 * 2 1 3 12 12 O 1.21280 * 120.00274 * 240.00206 * 11 2 1 13 13 N 1.34771 * 119.99812 * 59.99859 * 11 2 1 14 14 C 1.39237 * 119.99942 * 175.19120 * 13 11 2 15 15 C 1.39487 * 119.83336 * 215.90814 * 14 13 11 16 16 C 1.36379 * 120.16359 * 179.71839 * 15 14 13 17 17 C 1.40868 * 119.83206 * 0.57961 * 16 15 14 18 18 C 1.41142 * 120.16546 * 179.67687 * 17 16 15 19 19 H 1.08001 * 120.00409 * 160.67548 * 18 17 16 20 20 C 1.39908 * 119.99895 * 340.67605 * 18 17 16 21 21 N 1.30868 * 120.00038 * 330.24474 * 20 18 17 22 22 Si 1.86804 * 119.99867 * 150.25012 * 20 18 17 23 23 H 1.48494 * 109.47298 * 94.98665 * 22 20 18 24 24 H 1.48505 * 109.46880 * 214.98937 * 22 20 18 25 25 H 1.48498 * 109.47183 * 334.98368 * 22 20 18 26 26 C 1.40877 * 119.66885 * 359.69989 * 17 16 15 27 27 C 1.36366 * 119.82837 * 359.97438 * 26 17 16 28 28 H 1.08999 * 109.47013 * 186.15243 * 1 2 3 29 29 H 1.08994 * 109.47298 * 306.15491 * 1 2 3 30 30 H 1.09000 * 109.47262 * 66.15617 * 1 2 3 31 31 H 1.08997 * 109.46914 * 172.73887 * 4 2 1 32 32 H 1.08997 * 109.46781 * 52.74006 * 4 2 1 33 33 H 1.08998 * 109.47443 * 57.03770 * 5 4 2 34 34 H 1.09003 * 109.46976 * 59.99719 * 6 5 4 35 35 H 1.09009 * 109.46812 * 300.00355 * 6 5 4 36 36 H 1.09000 * 109.47589 * 299.99843 * 7 6 5 37 37 H 1.09004 * 109.46831 * 179.97438 * 7 6 5 38 38 H 1.08998 * 109.46761 * 59.99754 * 8 7 6 39 39 H 1.09001 * 109.46950 * 179.97438 * 8 7 6 40 40 H 1.08997 * 109.47005 * 179.97438 * 9 8 7 41 41 H 1.09009 * 109.46812 * 299.99735 * 9 8 7 42 42 H 1.08997 * 109.47509 * 179.97438 * 10 9 8 43 43 H 1.09009 * 109.46943 * 60.00272 * 10 9 8 44 44 H 0.97001 * 120.00100 * 355.19620 * 13 11 2 45 45 H 1.07993 * 119.91291 * 0.02562 * 15 14 13 46 46 H 1.08003 * 120.08034 * 180.25640 * 16 15 14 47 47 H 0.97007 * 120.00071 * 180.02562 * 21 20 18 48 48 H 1.08001 * 120.07998 * 179.97438 * 26 17 16 49 49 H 1.08000 * 119.91683 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6842 0.0975 2.4917 6 6 2.3972 1.4500 2.4327 7 6 2.0419 2.2684 3.6755 8 6 2.4866 1.5118 4.9289 9 6 1.7737 0.1593 4.9879 10 6 2.1289 -0.6591 3.7450 11 6 2.0323 -0.7104 -1.2305 12 8 2.7296 -1.6965 -1.1193 13 7 1.7067 -0.2500 -2.4545 14 6 2.2512 -0.8448 -3.5896 15 6 2.5741 -0.0605 -4.6970 16 6 3.1130 -0.6352 -5.8102 17 6 3.3321 -2.0264 -5.8443 18 6 3.8831 -2.6295 -6.9953 19 1 4.3370 -3.6072 -6.9280 20 6 3.8413 -1.9608 -8.2235 21 7 2.8645 -1.1295 -8.4831 22 14 5.1799 -2.2547 -9.4930 23 1 4.7345 -3.3001 -10.4490 24 1 5.4496 -0.9934 -10.2289 25 1 6.4196 -2.7042 -8.8102 26 6 2.9980 -2.8126 -4.7242 27 6 2.4660 -2.2227 -3.6157 28 1 -0.3633 -1.0217 0.1101 29 1 -0.3633 0.6062 0.8297 30 1 -0.3634 0.4154 -0.9399 31 1 3.1222 -0.8351 1.1866 32 1 1.5745 -1.7046 1.3165 33 1 0.6064 0.2561 2.5261 34 1 2.0807 1.9888 1.5396 35 1 3.4751 1.2913 2.3985 36 1 0.9640 2.4272 3.7103 37 1 2.5502 3.2318 3.6337 38 1 3.5644 1.3532 4.8941 39 1 2.2339 2.0952 5.8143 40 1 2.0908 -0.3799 5.8805 41 1 0.6958 0.3181 5.0226 42 1 1.6214 -1.6228 3.7873 43 1 3.2068 -0.8178 3.7104 44 1 1.0931 0.4959 -2.5448 45 1 2.4014 1.0052 -4.6709 46 1 3.3663 -0.0261 -6.6653 47 1 2.8353 -0.6661 -9.3348 48 1 3.1627 -3.8798 -4.7433 49 1 2.2097 -2.8241 -2.7560 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000510099737.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:29 Heat of formation + Delta-G solvation = -74.176744 kcal Electronic energy + Delta-G solvation = -25784.180979 eV Core-core repulsion = 22287.189287 eV Total energy + Delta-G solvation = -3496.991692 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 3.04 seconds Orbital eigenvalues (eV) -41.39815 -39.80860 -38.96557 -36.24482 -35.73502 -34.74510 -31.93964 -31.53437 -31.40880 -30.60382 -27.18574 -27.01286 -24.79754 -23.54200 -23.25538 -22.55013 -21.64112 -20.65008 -20.25475 -19.31403 -18.38447 -17.81235 -17.03864 -16.44795 -16.26104 -15.82118 -15.54150 -15.41204 -14.97436 -14.87509 -14.85625 -14.44565 -14.19446 -14.00066 -13.95425 -13.77589 -13.32327 -13.16863 -13.03063 -12.85241 -12.73713 -12.68824 -12.66315 -12.35984 -12.11542 -11.96779 -11.93306 -11.85546 -11.58092 -11.55986 -11.24415 -11.14648 -10.87764 -10.73795 -10.62794 -10.37638 -9.48754 -8.98976 -8.73333 -6.24418 0.82061 1.12908 1.36731 1.42791 1.54155 1.84882 2.18971 2.41533 2.65160 3.67611 3.69939 3.73944 3.84179 3.98651 4.09924 4.15261 4.35220 4.38256 4.39068 4.49134 4.54606 4.62541 4.67842 4.69114 4.70955 4.81285 4.89200 4.90235 4.97317 5.02472 5.09584 5.13337 5.15828 5.21227 5.25055 5.30094 5.32071 5.32609 5.39021 5.44063 5.45821 5.47208 5.55944 5.63457 5.69376 5.88815 6.02381 6.10401 6.34953 6.61195 6.78777 6.88442 6.98544 7.47022 8.20564 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.034728 B = 0.002190 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.068369 B =12780.412941 C =12872.858365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.119 0.881 4 C -0.090 4.090 5 C -0.077 4.077 6 C -0.119 4.119 7 C -0.116 4.116 8 C -0.121 4.121 9 C -0.116 4.116 10 C -0.117 4.117 11 C 0.496 3.504 12 O -0.581 6.581 13 N -0.644 5.644 14 C -0.007 4.007 15 C -0.103 4.103 16 C -0.189 4.189 17 C 0.079 3.921 18 C -0.500 4.500 19 H 0.073 0.927 20 C 0.047 3.953 21 N -0.800 5.800 22 Si 0.976 3.024 23 H -0.259 1.259 24 H -0.259 1.259 25 H -0.263 1.263 26 C -0.248 4.248 27 C -0.080 4.080 28 H 0.050 0.950 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.050 0.950 44 H 0.414 0.586 45 H 0.123 0.877 46 H 0.105 0.895 47 H 0.294 0.706 48 H 0.090 0.910 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.543 9.968 20.183 23.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.137 0.863 4 C -0.128 4.128 5 C -0.095 4.095 6 C -0.157 4.157 7 C -0.154 4.154 8 C -0.159 4.159 9 C -0.153 4.153 10 C -0.155 4.155 11 C 0.286 3.714 12 O -0.460 6.460 13 N -0.288 5.288 14 C -0.101 4.101 15 C -0.123 4.123 16 C -0.209 4.209 17 C 0.077 3.923 18 C -0.528 4.528 19 H 0.092 0.908 20 C -0.172 4.172 21 N -0.424 5.424 22 Si 0.795 3.205 23 H -0.184 1.184 24 H -0.183 1.183 25 H -0.187 1.187 26 C -0.268 4.268 27 C -0.100 4.100 28 H 0.069 0.931 29 H 0.114 0.886 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.251 0.749 45 H 0.141 0.859 46 H 0.123 0.877 47 H 0.105 0.895 48 H 0.108 0.892 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.190 9.453 20.117 22.825 hybrid contribution 0.468 -0.327 -0.976 1.131 sum -4.721 9.126 19.140 21.724 Atomic orbital electron populations 1.21847 0.91096 1.02910 1.04013 1.21389 0.98888 1.01091 0.90472 0.86332 1.21392 1.00333 0.98399 0.92703 1.21146 1.01068 0.94586 0.92745 1.21684 0.99856 0.95471 0.98662 1.21520 1.01690 0.98195 0.93977 1.21559 0.99917 0.96226 0.98195 1.21509 1.00827 0.95828 0.97141 1.21584 1.00706 0.98576 0.94592 1.21649 0.79564 0.84666 0.85545 1.90650 1.40186 1.28065 1.87137 1.42943 1.46339 1.35743 1.03824 1.17189 1.12211 0.91443 0.89209 1.20463 1.00270 0.98416 0.93196 1.20766 1.07333 0.94604 0.98158 1.17935 0.89184 0.92567 0.92653 1.19737 1.35118 1.04559 0.93395 0.90837 1.26766 0.96674 0.92807 1.00915 1.69924 1.26773 1.21171 1.24531 0.85310 0.78675 0.79412 0.77067 1.18389 1.18350 1.18653 1.20721 1.11579 0.98002 0.96498 1.20450 0.99329 0.93761 0.96500 0.93052 0.88632 0.91407 0.93567 0.92760 0.89488 0.91072 0.93235 0.91166 0.91759 0.92852 0.91322 0.91886 0.91328 0.92228 0.93152 0.74876 0.85870 0.87692 0.89479 0.89187 0.88056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.80 71.98 0.63 -1.70 16 2 C -0.10 -2.14 2.59 -11.54 -0.03 -2.17 16 3 H 0.12 2.11 6.17 -2.39 -0.01 2.10 16 4 C -0.09 -2.04 3.55 30.59 0.11 -1.93 16 5 C -0.08 -1.23 2.07 -10.79 -0.02 -1.25 16 6 C -0.12 -1.76 4.93 30.59 0.15 -1.61 16 7 C -0.12 -1.39 5.92 30.59 0.18 -1.21 16 8 C -0.12 -1.48 5.92 30.60 0.18 -1.30 16 9 C -0.12 -1.46 5.92 30.59 0.18 -1.28 16 10 C -0.12 -1.87 5.20 30.59 0.16 -1.71 16 11 C 0.50 16.90 6.98 87.66 0.61 17.51 16 12 O -0.58 -25.60 13.33 -3.03 -0.04 -25.64 16 13 N -0.64 -22.13 5.20 -303.11 -1.58 -23.70 16 14 C -0.01 -0.32 6.29 38.57 0.24 -0.08 16 15 C -0.10 -4.75 9.90 22.14 0.22 -4.53 16 16 C -0.19 -9.98 8.73 22.48 0.20 -9.79 16 17 C 0.08 4.48 5.60 -21.28 -0.12 4.36 16 18 C -0.50 -27.80 8.97 23.39 0.21 -27.59 16 19 H 0.07 4.01 8.00 -2.91 -0.02 3.99 16 20 C 0.05 2.38 4.88 85.24 0.42 2.80 16 21 N -0.80 -40.94 11.40 21.82 0.25 -40.69 16 22 Si 0.98 37.84 29.65 68.60 2.03 39.87 16 23 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 24 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 25 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 26 C -0.25 -13.53 9.74 22.48 0.22 -13.32 16 27 C -0.08 -4.09 8.61 22.13 0.19 -3.90 16 28 H 0.05 0.97 8.13 -2.39 -0.02 0.95 16 29 H 0.09 1.06 6.87 -2.39 -0.02 1.04 16 30 H 0.07 1.03 7.30 -2.39 -0.02 1.01 16 31 H 0.05 1.27 7.87 -2.39 -0.02 1.26 16 32 H 0.05 1.36 8.12 -2.39 -0.02 1.34 16 33 H 0.09 1.16 6.65 -2.39 -0.02 1.14 16 34 H 0.07 0.95 6.35 -2.39 -0.02 0.94 16 35 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 42 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 44 H 0.41 10.72 8.03 -92.71 -0.74 9.98 16 45 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 46 H 0.11 5.63 6.23 -2.91 -0.02 5.61 16 47 H 0.29 13.32 8.30 -92.70 -0.77 12.55 16 48 H 0.09 4.77 8.06 -2.91 -0.02 4.75 16 49 H 0.10 5.15 6.27 -2.91 -0.02 5.13 16 Total: -1.00 -67.13 379.21 4.59 -62.55 By element: Atomic # 1 Polarization: 36.13 SS G_CDS: 0.19 Total: 36.31 kcal Atomic # 6 Polarization: -52.43 SS G_CDS: 3.73 Total: -48.70 kcal Atomic # 7 Polarization: -63.07 SS G_CDS: -1.33 Total: -64.39 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.04 Total: -25.64 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 2.03 Total: 39.87 kcal Total: -67.13 4.59 -62.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000510099737.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.628 kcal (2) G-P(sol) polarization free energy of solvation -67.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.04 seconds