Wall clock time and date at job start Tue Mar 31 2020 11:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09009 * 109.46891 * 2 1 4 4 C 1.52992 * 109.47400 * 240.00311 * 2 1 3 5 5 C 1.53005 * 109.47413 * 176.93348 * 4 2 1 6 6 C 1.52991 * 109.47358 * 173.38244 * 5 4 2 7 7 C 1.53000 * 109.47068 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47476 * 300.00113 * 7 6 5 9 9 C 1.53002 * 109.46608 * 59.99613 * 8 7 6 10 10 C 1.52999 * 109.47396 * 299.99988 * 9 8 7 11 11 C 1.50696 * 109.47396 * 119.99799 * 2 1 3 12 12 O 1.21277 * 119.99859 * 99.64719 * 11 2 1 13 13 N 1.34782 * 119.99984 * 279.65875 * 11 2 1 14 14 C 1.37140 * 120.00218 * 5.04883 * 13 11 2 15 15 H 1.07999 * 120.00204 * 302.88472 * 14 13 11 16 16 C 1.38884 * 119.99856 * 122.87917 * 14 13 11 17 17 N 1.31422 * 120.00269 * 171.77492 * 16 14 13 18 18 Si 1.86804 * 120.00258 * 351.77721 * 16 14 13 19 19 H 1.48494 * 109.47311 * 93.22891 * 18 16 14 20 20 H 1.48500 * 109.47438 * 213.23500 * 18 16 14 21 21 H 1.48506 * 109.46885 * 333.23493 * 18 16 14 22 22 C 1.39787 * 119.99615 * 185.05577 * 13 11 2 23 23 C 1.38961 * 120.08056 * 7.56021 * 22 13 11 24 24 C 1.38081 * 119.92127 * 179.74040 * 23 22 13 25 25 C 1.38311 * 120.07898 * 0.53777 * 24 23 22 26 26 C 1.38311 * 120.15243 * 359.71175 * 25 24 23 27 27 C 1.38074 * 120.07987 * 0.03183 * 26 25 24 28 28 H 1.08998 * 109.47397 * 297.32972 * 1 2 3 29 29 H 1.09006 * 109.47050 * 57.33197 * 1 2 3 30 30 H 1.09005 * 109.47053 * 177.32634 * 1 2 3 31 31 H 1.09007 * 109.47446 * 56.93556 * 4 2 1 32 32 H 1.09001 * 109.47150 * 296.93408 * 4 2 1 33 33 H 1.09002 * 109.46477 * 53.38117 * 5 4 2 34 34 H 1.09002 * 109.47430 * 60.00456 * 6 5 4 35 35 H 1.08996 * 109.47436 * 300.00344 * 6 5 4 36 36 H 1.09005 * 109.47043 * 180.02562 * 7 6 5 37 37 H 1.09003 * 109.46803 * 60.00492 * 7 6 5 38 38 H 1.08994 * 109.47341 * 179.97438 * 8 7 6 39 39 H 1.08998 * 109.46793 * 300.00362 * 8 7 6 40 40 H 1.08998 * 109.46932 * 60.00834 * 9 8 7 41 41 H 1.09003 * 109.46670 * 180.02562 * 9 8 7 42 42 H 1.08993 * 109.47104 * 300.00511 * 10 9 8 43 43 H 1.08996 * 109.46791 * 179.97438 * 10 9 8 44 44 H 0.96997 * 120.00311 * 180.02562 * 17 16 14 45 45 H 1.08000 * 120.03667 * 0.02562 * 23 22 13 46 46 H 1.08000 * 119.96350 * 180.24889 * 24 23 22 47 47 H 1.07995 * 119.92549 * 179.70172 * 25 24 23 48 48 H 1.08003 * 119.95907 * 180.02562 * 26 25 24 49 49 H 1.08008 * 120.04168 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 3.5682 -0.6546 -1.2884 6 6 4.0866 -1.5131 -2.4438 7 6 5.6146 -1.4461 -2.4833 8 6 6.0564 0.0045 -2.6875 9 6 5.5379 0.8629 -1.5320 10 6 4.0099 0.7959 -1.4925 11 6 2.0324 -0.7103 1.2304 12 8 2.4005 -1.8636 1.1570 13 7 2.0724 -0.0641 2.4125 14 6 1.5605 1.2038 2.5186 15 1 1.9338 1.9919 1.8816 16 6 0.5619 1.4742 3.4452 17 7 0.1847 2.7143 3.6617 18 14 -0.2449 0.0752 4.3840 19 1 0.4599 -0.1257 5.6755 20 1 -1.6684 0.4092 4.6435 21 1 -0.1676 -1.1704 3.5790 22 6 2.6359 -0.6862 3.5304 23 6 3.2945 -1.9020 3.3927 24 6 3.8545 -2.5110 4.4983 25 6 3.7509 -1.9177 5.7434 26 6 3.0917 -0.7101 5.8848 27 6 2.5338 -0.0929 4.7829 28 1 -0.3634 0.4718 0.9129 29 1 -0.3633 0.5547 -0.8652 30 1 -0.3633 -1.0266 -0.0479 31 1 1.6326 -0.2400 -2.1384 32 1 1.7223 -1.7635 -1.2222 33 1 3.9722 -1.0290 -0.3478 34 1 3.6825 -1.1388 -3.3844 35 1 3.7715 -2.5464 -2.2986 36 1 5.9839 -2.0573 -3.3068 37 1 6.0191 -1.8202 -1.5428 38 1 7.1450 0.0523 -2.7152 39 1 5.6518 0.3785 -3.6279 40 1 5.9424 0.4889 -0.5915 41 1 5.8523 1.8964 -1.6777 42 1 3.6054 1.1699 -2.4330 43 1 3.6406 1.4071 -0.6691 44 1 -0.5125 2.9032 4.3091 45 1 3.3722 -2.3679 2.4215 46 1 4.3700 -3.4540 4.3914 47 1 4.1857 -2.3986 6.6071 48 1 3.0130 -0.2494 6.8585 49 1 2.0188 0.8499 4.8941 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000510794439.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:43 Heat of formation + Delta-G solvation = -33.474369 kcal Electronic energy + Delta-G solvation = -28084.019119 eV Core-core repulsion = 24588.792414 eV Total energy + Delta-G solvation = -3495.226705 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -41.97181 -39.95935 -38.94661 -36.93045 -35.59472 -34.17162 -32.10734 -31.75175 -31.55732 -30.48840 -27.23741 -26.95342 -25.00487 -23.56253 -23.33379 -22.63790 -21.90090 -20.85683 -20.56951 -19.45467 -18.20215 -17.62716 -17.16064 -16.51355 -16.14384 -15.98068 -15.56838 -15.42966 -15.04940 -14.97922 -14.90315 -14.74980 -14.45571 -14.26573 -14.08353 -13.86673 -13.59127 -13.20007 -13.10231 -13.02414 -12.89165 -12.65557 -12.57471 -12.37647 -12.19261 -12.06670 -11.93894 -11.78477 -11.73205 -11.62549 -11.37098 -11.20407 -10.83694 -10.80610 -10.70664 -10.05090 -9.65787 -8.80063 -8.50282 -6.49381 0.43794 0.53451 1.18722 1.26222 1.34545 1.87192 2.09952 2.50220 2.73739 3.08124 3.67889 3.82242 3.90664 3.91557 4.13071 4.16858 4.19105 4.30354 4.34669 4.40618 4.45431 4.57713 4.64448 4.66151 4.68998 4.70504 4.73633 4.77718 4.82631 4.87204 4.88198 4.99217 5.05102 5.12669 5.17096 5.22117 5.26321 5.27954 5.35805 5.38338 5.44120 5.45740 5.51115 5.59255 5.60511 5.66742 5.68116 5.72388 6.00218 6.05653 6.40113 6.85324 7.26054 7.59026 8.51229 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013890 B = 0.005281 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.396540 B = 5300.346806 C = 6250.327636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.088 4.088 3 H 0.090 0.910 4 C -0.089 4.089 5 C -0.086 4.086 6 C -0.105 4.105 7 C -0.119 4.119 8 C -0.111 4.111 9 C -0.120 4.120 10 C -0.114 4.114 11 C 0.502 3.498 12 O -0.569 6.569 13 N -0.426 5.426 14 C -0.349 4.349 15 H 0.086 0.914 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.907 3.093 19 H -0.238 1.238 20 H -0.285 1.285 21 H -0.288 1.288 22 C 0.128 3.872 23 C -0.200 4.200 24 C -0.105 4.105 25 C -0.157 4.157 26 C -0.108 4.108 27 C -0.186 4.186 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.040 0.960 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.043 0.957 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.039 0.961 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.040 0.960 44 H 0.283 0.717 45 H 0.162 0.838 46 H 0.147 0.853 47 H 0.153 0.847 48 H 0.139 0.861 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.684 -5.740 -8.000 11.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.109 4.109 3 H 0.108 0.892 4 C -0.127 4.127 5 C -0.104 4.104 6 C -0.142 4.142 7 C -0.156 4.156 8 C -0.149 4.149 9 C -0.158 4.158 10 C -0.152 4.152 11 C 0.295 3.705 12 O -0.453 6.453 13 N -0.137 5.137 14 C -0.476 4.476 15 H 0.103 0.897 16 C -0.144 4.144 17 N -0.524 5.524 18 Si 0.733 3.267 19 H -0.162 1.162 20 H -0.211 1.211 21 H -0.214 1.214 22 C 0.032 3.968 23 C -0.220 4.220 24 C -0.123 4.123 25 C -0.176 4.176 26 C -0.127 4.127 27 C -0.207 4.207 28 H 0.063 0.937 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.059 0.941 44 H 0.093 0.907 45 H 0.179 0.821 46 H 0.164 0.836 47 H 0.171 0.829 48 H 0.157 0.843 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.698 -6.096 -8.007 12.089 hybrid contribution -0.753 0.016 1.058 1.299 sum 5.945 -6.080 -6.949 10.981 Atomic orbital electron populations 1.21626 0.92805 1.01619 1.03010 1.21139 0.97711 1.00484 0.91578 0.89178 1.21510 0.95349 1.00290 0.95553 1.21120 0.94839 0.95857 0.98607 1.21493 0.95767 0.99034 0.97953 1.21534 0.95543 0.97164 1.01373 1.21498 1.00536 0.94626 0.98223 1.21529 0.95412 1.00252 0.98593 1.21617 0.96074 0.95868 1.01593 1.21595 0.77268 0.85722 0.85890 1.90224 1.50634 1.18351 1.86043 1.41576 1.50247 1.14865 1.06963 1.18679 1.19489 0.84651 1.24762 0.89659 1.25767 0.95082 0.97075 0.96505 1.69701 1.29690 1.19116 1.33888 0.86623 0.77967 0.80313 0.81773 1.16244 1.21137 1.21377 1.18853 0.94975 0.94248 0.88702 1.22592 1.00493 0.95891 1.03017 1.21404 0.98531 1.00201 0.92168 1.21365 1.01906 0.96067 0.98268 1.21209 0.97413 0.96149 0.97911 1.21230 1.05049 1.02079 0.92293 0.93692 0.89235 0.93136 0.89059 0.92127 0.94139 0.90530 0.92686 0.90512 0.93777 0.91380 0.90774 0.94247 0.91417 0.90353 0.94115 0.90706 0.82115 0.83571 0.82939 0.84291 0.86351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.78 9.09 71.98 0.65 -4.12 16 2 C -0.09 -3.33 1.89 -11.54 -0.02 -3.35 16 3 H 0.09 3.53 5.43 -2.38 -0.01 3.52 16 4 C -0.09 -2.73 3.81 30.59 0.12 -2.61 16 5 C -0.09 -2.56 2.00 -10.79 -0.02 -2.58 16 6 C -0.11 -2.51 5.20 30.59 0.16 -2.35 16 7 C -0.12 -2.58 5.92 30.60 0.18 -2.40 16 8 C -0.11 -2.25 5.92 30.60 0.18 -2.07 16 9 C -0.12 -3.02 5.92 30.59 0.18 -2.84 16 10 C -0.11 -3.16 4.99 30.59 0.15 -3.01 16 11 C 0.50 22.94 5.94 87.65 0.52 23.46 16 12 O -0.57 -26.83 11.43 -3.02 -0.03 -26.87 16 13 N -0.43 -21.15 2.12 -458.90 -0.97 -22.12 16 14 C -0.35 -18.20 7.05 84.02 0.59 -17.61 16 15 H 0.09 4.73 7.42 -2.91 -0.02 4.71 16 16 C 0.06 3.27 4.16 84.91 0.35 3.62 16 17 N -0.89 -48.17 13.96 21.65 0.30 -47.87 16 18 Si 0.91 43.82 24.08 68.60 1.65 45.48 16 19 H -0.24 -10.90 5.79 99.48 0.58 -10.32 16 20 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 21 H -0.29 -15.05 7.11 99.48 0.71 -14.34 16 22 C 0.13 6.20 5.23 38.22 0.20 6.40 16 23 C -0.20 -8.84 8.98 22.41 0.20 -8.64 16 24 C -0.10 -3.74 10.04 22.25 0.22 -3.52 16 25 C -0.16 -5.19 10.04 22.30 0.22 -4.97 16 26 C -0.11 -4.09 9.88 22.25 0.22 -3.87 16 27 C -0.19 -8.58 5.73 22.40 0.13 -8.45 16 28 H 0.04 1.89 7.03 -2.39 -0.02 1.87 16 29 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 30 H 0.05 1.74 8.14 -2.38 -0.02 1.73 16 31 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 32 H 0.06 1.96 7.78 -2.39 -0.02 1.94 16 33 H 0.04 1.52 6.42 -2.39 -0.02 1.50 16 34 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 43 H 0.04 1.32 6.55 -2.39 -0.02 1.31 16 44 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 45 H 0.16 7.44 4.70 -47.87 -0.23 7.22 16 46 H 0.15 4.14 8.06 -2.91 -0.02 4.11 16 47 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 48 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 49 H 0.12 5.90 4.47 -2.91 -0.01 5.89 16 Total: -1.00 -60.88 363.40 5.77 -55.10 By element: Atomic # 1 Polarization: 34.61 SS G_CDS: 0.58 Total: 35.19 kcal Atomic # 6 Polarization: -43.16 SS G_CDS: 4.25 Total: -38.91 kcal Atomic # 7 Polarization: -69.32 SS G_CDS: -0.67 Total: -69.99 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.03 Total: -26.87 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.65 Total: 45.48 kcal Total: -60.88 5.77 -55.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000510794439.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.629 kcal (2) G-P(sol) polarization free energy of solvation -60.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds