Wall clock time and date at job start Tue Mar 31 2020 11:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47454 * 2 1 4 4 C 1.53008 * 109.47267 * 120.00280 * 2 1 3 5 5 C 1.50698 * 109.46743 * 294.99467 * 4 2 1 6 6 O 1.21278 * 120.00250 * 0.02562 * 5 4 2 7 7 N 1.34775 * 119.99653 * 179.97438 * 5 4 2 8 8 C 1.39236 * 120.00024 * 174.90368 * 7 5 4 9 9 C 1.39479 * 119.83399 * 325.34432 * 8 7 5 10 10 C 1.36371 * 120.17187 * 179.71707 * 9 8 7 11 11 C 1.40874 * 119.82385 * 0.58039 * 10 9 8 12 12 C 1.41157 * 120.16480 * 179.67945 * 11 10 9 13 13 H 1.07994 * 119.99930 * 205.36317 * 12 11 10 14 14 C 1.39902 * 119.99707 * 25.35628 * 12 11 10 15 15 N 1.30871 * 120.00523 * 16.82221 * 14 12 11 16 16 Si 1.86805 * 119.99902 * 196.82382 * 14 12 11 17 17 H 1.48499 * 109.47103 * 60.00047 * 16 14 12 18 18 H 1.48500 * 109.47217 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47242 * 300.00098 * 16 14 12 20 20 C 1.40871 * 119.67367 * 359.69625 * 11 10 9 21 21 C 1.36373 * 119.82728 * 359.97438 * 20 11 10 22 22 C 1.53001 * 109.46953 * 240.00040 * 2 1 3 23 23 C 1.53005 * 109.47354 * 179.97438 * 22 2 1 24 24 C 1.52997 * 109.47032 * 179.97438 * 23 22 2 25 25 C 1.52998 * 109.47112 * 60.00202 * 24 23 22 26 26 C 1.52996 * 109.47126 * 299.99847 * 25 24 23 27 27 C 1.52998 * 109.47055 * 59.99975 * 22 2 1 28 28 H 1.09005 * 109.47161 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46795 * 299.99553 * 1 2 3 30 30 H 1.08990 * 109.47054 * 59.99427 * 1 2 3 31 31 H 1.09009 * 109.46854 * 174.99660 * 4 2 1 32 32 H 1.08997 * 109.46988 * 55.00107 * 4 2 1 33 33 H 0.97007 * 120.00043 * 354.90107 * 7 5 4 34 34 H 1.08001 * 119.91400 * 0.02562 * 9 8 7 35 35 H 1.07997 * 120.08938 * 180.25924 * 10 9 8 36 36 H 0.97006 * 120.00502 * 179.97438 * 15 14 12 37 37 H 1.08000 * 120.08587 * 179.97438 * 20 11 10 38 38 H 1.08000 * 119.91447 * 179.97438 * 21 20 11 39 39 H 1.08999 * 109.47008 * 300.00233 * 22 2 1 40 40 H 1.08994 * 109.46880 * 300.00246 * 23 22 2 41 41 H 1.09003 * 109.46764 * 60.00119 * 23 22 2 42 42 H 1.08994 * 109.47593 * 299.99936 * 24 23 22 43 43 H 1.09001 * 109.47146 * 180.02562 * 24 23 22 44 44 H 1.09005 * 109.47466 * 179.97438 * 25 24 23 45 45 H 1.09005 * 109.47414 * 59.99789 * 25 24 23 46 46 H 1.08999 * 109.47219 * 299.99915 * 26 25 24 47 47 H 1.09004 * 109.47407 * 179.97438 * 26 25 24 48 48 H 1.09001 * 109.47186 * 299.99786 * 27 22 2 49 49 H 1.08999 * 109.47002 * 60.00254 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 0.0570 2.4766 6 8 1.0111 1.0869 2.3633 7 7 1.9846 -0.3920 3.7001 8 6 1.7101 0.3787 4.8268 9 6 1.7807 1.7696 4.7501 10 6 1.5076 2.5313 5.8478 11 6 1.1654 1.9094 7.0646 12 6 0.8879 2.6906 8.2070 13 1 1.0279 2.2737 9.1933 14 6 0.4316 4.0051 8.0615 15 7 -0.0496 4.4075 6.9129 16 14 0.5094 5.1861 9.5068 17 1 1.9202 5.3423 9.9431 18 1 -0.0314 6.5069 9.0964 19 1 -0.2994 4.6480 10.6299 20 6 1.1017 0.5039 7.1357 21 6 1.3709 -0.2442 6.0278 22 6 2.0399 -0.7213 -1.2493 23 6 3.5700 -0.7207 -1.2497 24 6 4.0798 -1.4426 -2.4986 25 6 3.5693 -0.7222 -3.7481 26 6 2.0393 -0.7227 -3.7477 27 6 1.5299 0.0000 -2.4985 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 3.1264 -0.7996 1.2055 32 1 1.6054 -1.7199 1.2951 33 1 2.4228 -1.2521 3.7958 34 1 2.0476 2.2447 3.8177 35 1 1.5587 3.6083 5.7858 36 1 -0.3663 5.3188 6.8121 37 1 0.8404 0.0201 8.0653 38 1 1.3230 -1.3219 6.0809 39 1 1.6765 -1.7489 -1.2493 40 1 3.9329 0.3070 -1.2499 41 1 3.9337 -1.2344 -0.3597 42 1 3.7169 -2.4703 -2.4980 43 1 5.1699 -1.4426 -2.4987 44 1 3.9329 -1.2361 -4.6380 45 1 3.9323 0.3057 -3.7488 46 1 1.6763 -1.7504 -3.7471 47 1 1.6756 -0.2090 -4.6377 48 1 0.4399 0.0000 -2.4985 49 1 1.8933 1.0276 -2.4985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000511012004.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:12 Heat of formation + Delta-G solvation = -57.099097 kcal Electronic energy + Delta-G solvation = -25902.711998 eV Core-core repulsion = 22406.460848 eV Total energy + Delta-G solvation = -3496.251150 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -39.98748 -38.90543 -37.25755 -34.91178 -34.22344 -32.91291 -31.10251 -29.92340 -29.42766 -28.96597 -27.54419 -24.87158 -23.40356 -22.56997 -21.46971 -21.06439 -20.11301 -19.79302 -19.26390 -17.30415 -16.94513 -16.26838 -15.49157 -15.44590 -15.06130 -14.46615 -14.37119 -13.98710 -13.93678 -13.78151 -13.40600 -13.34103 -12.84503 -12.71649 -12.53145 -12.22277 -11.98426 -11.94045 -11.74832 -11.55774 -11.42784 -11.29920 -11.15770 -11.09850 -11.05440 -10.94291 -10.71889 -10.50244 -10.47918 -10.12471 -9.97315 -9.92107 -9.73951 -9.38658 -9.03290 -8.60616 -7.50196 -6.97105 -6.70749 -4.26924 2.62928 3.04209 3.08307 3.11044 3.13230 3.44474 3.82314 3.95248 4.48352 4.50283 4.58275 4.66742 4.87595 4.96079 5.05519 5.17344 5.21027 5.31183 5.34495 5.38069 5.45352 5.51481 5.60585 5.73055 5.74123 5.76040 5.80150 5.85512 5.95473 5.97875 6.03808 6.05155 6.10203 6.17238 6.24432 6.28169 6.40782 6.50119 6.62679 6.86234 7.02807 7.07866 7.18668 7.32623 7.61783 7.72073 8.01384 8.07228 8.25011 8.36775 8.65075 8.86304 8.90830 9.05118 10.21989 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.027717 B = 0.002339 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.966677 B =11967.200331 C =12375.595071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.068 4.068 3 H 0.077 0.923 4 C -0.137 4.137 5 C 0.496 3.504 6 O -0.525 6.525 7 N -0.656 5.656 8 C -0.003 4.003 9 C -0.085 4.085 10 C -0.155 4.155 11 C 0.105 3.895 12 C -0.460 4.460 13 H 0.077 0.923 14 C 0.074 3.926 15 N -0.790 5.790 16 Si 0.909 3.091 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.266 1.266 20 C -0.216 4.216 21 C -0.106 4.106 22 C -0.081 4.081 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.120 4.120 26 C -0.119 4.119 27 C -0.116 4.116 28 H 0.044 0.956 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.393 0.607 34 H 0.100 0.900 35 H 0.120 0.880 36 H 0.282 0.718 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.058 0.942 48 H 0.066 0.934 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.938 -10.216 -16.994 20.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.087 4.087 3 H 0.096 0.904 4 C -0.178 4.178 5 C 0.283 3.717 6 O -0.402 6.402 7 N -0.299 5.299 8 C -0.096 4.096 9 C -0.105 4.105 10 C -0.175 4.175 11 C 0.102 3.898 12 C -0.490 4.490 13 H 0.095 0.905 14 C -0.144 4.144 15 N -0.415 5.415 16 Si 0.733 3.267 17 H -0.188 1.188 18 H -0.203 1.203 19 H -0.190 1.190 20 C -0.236 4.236 21 C -0.126 4.126 22 C -0.099 4.099 23 C -0.157 4.157 24 C -0.156 4.156 25 C -0.158 4.158 26 C -0.157 4.157 27 C -0.153 4.153 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.226 0.774 34 H 0.118 0.882 35 H 0.137 0.863 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.084 0.916 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.375 -9.257 -17.220 20.276 hybrid contribution 0.135 0.038 0.688 0.702 sum 5.510 -9.218 -16.532 19.715 Atomic orbital electron populations 1.22000 0.94778 1.01160 1.03221 1.20886 0.96463 0.99717 0.91633 0.90412 1.21808 1.02566 1.00074 0.93308 1.20633 0.79923 0.86658 0.84529 1.90683 1.38580 1.24721 1.86173 1.43077 1.59432 1.21895 1.05545 1.17176 1.15634 0.90579 0.86177 1.20396 1.00461 0.91700 0.97979 1.20987 1.04041 0.99640 0.92828 1.17660 0.88046 0.90986 0.93066 1.19501 1.39010 0.96370 0.94090 0.90462 1.25935 0.92617 0.98919 0.96955 1.69850 1.27854 1.18581 1.25187 0.86364 0.79698 0.78996 0.81622 1.18837 1.20349 1.19040 1.20548 1.11769 0.94171 0.97091 1.20058 1.02360 0.97075 0.93151 1.21207 0.94969 0.99527 0.94229 1.21688 0.95450 1.00965 0.97574 1.21527 0.99963 0.99341 0.94802 1.21542 0.95871 1.00726 0.97630 1.21546 0.95570 1.00643 0.97904 1.21643 1.00639 0.99375 0.93689 0.93696 0.90313 0.92906 0.89145 0.89566 0.77444 0.88212 0.86257 0.90752 0.88706 0.89305 0.91349 0.91870 0.91715 0.92179 0.92279 0.92460 0.92089 0.92197 0.92319 0.91576 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.58 37.16 0.32 -1.67 16 2 C -0.07 -0.81 1.62 -90.62 -0.15 -0.95 16 3 H 0.08 1.07 7.96 -51.93 -0.41 0.66 16 4 C -0.14 -1.63 4.96 -27.88 -0.14 -1.77 16 5 C 0.50 8.57 7.26 -10.99 -0.08 8.49 16 6 O -0.53 -11.37 11.70 5.56 0.07 -11.31 16 7 N -0.66 -11.55 5.31 -9.74 -0.05 -11.60 16 8 C 0.00 -0.08 6.27 -83.57 -0.52 -0.60 16 9 C -0.09 -2.15 8.57 -39.79 -0.34 -2.49 16 10 C -0.16 -4.20 8.63 -39.26 -0.34 -4.54 16 11 C 0.11 2.85 5.57 -106.80 -0.59 2.26 16 12 C -0.46 -12.33 9.04 -37.85 -0.34 -12.67 16 13 H 0.08 1.97 7.90 -52.49 -0.41 1.55 16 14 C 0.07 1.89 5.15 -17.34 -0.09 1.80 16 15 N -0.79 -21.08 10.94 55.55 0.61 -20.47 16 16 Si 0.91 18.90 29.59 -169.99 -5.03 13.87 16 17 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 18 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 19 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 20 C -0.22 -5.30 9.74 -39.26 -0.38 -5.68 16 21 C -0.11 -2.37 9.90 -39.79 -0.39 -2.76 16 22 C -0.08 -0.75 1.78 -90.62 -0.16 -0.91 16 23 C -0.12 -1.02 4.86 -26.73 -0.13 -1.15 16 24 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 25 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 26 C -0.12 -0.91 5.93 -26.71 -0.16 -1.07 16 27 C -0.12 -1.03 4.85 -26.71 -0.13 -1.16 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 1.30 5.95 -51.93 -0.31 0.99 16 30 H 0.05 0.62 6.43 -51.93 -0.33 0.28 16 31 H 0.09 0.91 6.18 -51.92 -0.32 0.59 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.39 5.34 8.82 -40.82 -0.36 4.98 16 34 H 0.10 2.51 6.48 -52.49 -0.34 2.17 16 35 H 0.12 3.35 6.18 -52.49 -0.32 3.03 16 36 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 37 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 38 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.53 6.32 -51.93 -0.33 0.20 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.60 6.43 -51.93 -0.33 0.26 16 49 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 376.02 15.07 5.67 5.67 Total: -1.00 -30.01 376.02 -10.80 -40.80 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -8.11 Total: 10.02 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: -3.95 Total: -26.98 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: 0.56 Total: -32.07 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.07 Total: -11.31 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.01 -10.80 -40.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000511012004.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.295 kcal (2) G-P(sol) polarization free energy of solvation -30.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds