Wall clock time and date at job start Tue Mar 31 2020 11:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47454 * 2 1 4 4 C 1.53008 * 109.47267 * 120.00280 * 2 1 3 5 5 C 1.50698 * 109.46743 * 294.99467 * 4 2 1 6 6 O 1.21278 * 120.00250 * 0.02562 * 5 4 2 7 7 N 1.34775 * 119.99653 * 179.97438 * 5 4 2 8 8 C 1.39236 * 120.00024 * 174.90368 * 7 5 4 9 9 C 1.39479 * 119.83399 * 325.34432 * 8 7 5 10 10 C 1.36371 * 120.17187 * 179.71707 * 9 8 7 11 11 C 1.40874 * 119.82385 * 0.58039 * 10 9 8 12 12 C 1.41157 * 120.16480 * 179.67945 * 11 10 9 13 13 H 1.07994 * 119.99930 * 205.36317 * 12 11 10 14 14 C 1.39902 * 119.99707 * 25.35628 * 12 11 10 15 15 N 1.30871 * 120.00523 * 16.82221 * 14 12 11 16 16 Si 1.86805 * 119.99902 * 196.82382 * 14 12 11 17 17 H 1.48499 * 109.47103 * 60.00047 * 16 14 12 18 18 H 1.48500 * 109.47217 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47242 * 300.00098 * 16 14 12 20 20 C 1.40871 * 119.67367 * 359.69625 * 11 10 9 21 21 C 1.36373 * 119.82728 * 359.97438 * 20 11 10 22 22 C 1.53001 * 109.46953 * 240.00040 * 2 1 3 23 23 C 1.53005 * 109.47354 * 179.97438 * 22 2 1 24 24 C 1.52997 * 109.47032 * 179.97438 * 23 22 2 25 25 C 1.52998 * 109.47112 * 60.00202 * 24 23 22 26 26 C 1.52996 * 109.47126 * 299.99847 * 25 24 23 27 27 C 1.52998 * 109.47055 * 59.99975 * 22 2 1 28 28 H 1.09005 * 109.47161 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46795 * 299.99553 * 1 2 3 30 30 H 1.08990 * 109.47054 * 59.99427 * 1 2 3 31 31 H 1.09009 * 109.46854 * 174.99660 * 4 2 1 32 32 H 1.08997 * 109.46988 * 55.00107 * 4 2 1 33 33 H 0.97007 * 120.00043 * 354.90107 * 7 5 4 34 34 H 1.08001 * 119.91400 * 0.02562 * 9 8 7 35 35 H 1.07997 * 120.08938 * 180.25924 * 10 9 8 36 36 H 0.97006 * 120.00502 * 179.97438 * 15 14 12 37 37 H 1.08000 * 120.08587 * 179.97438 * 20 11 10 38 38 H 1.08000 * 119.91447 * 179.97438 * 21 20 11 39 39 H 1.08999 * 109.47008 * 300.00233 * 22 2 1 40 40 H 1.08994 * 109.46880 * 300.00246 * 23 22 2 41 41 H 1.09003 * 109.46764 * 60.00119 * 23 22 2 42 42 H 1.08994 * 109.47593 * 299.99936 * 24 23 22 43 43 H 1.09001 * 109.47146 * 180.02562 * 24 23 22 44 44 H 1.09005 * 109.47466 * 179.97438 * 25 24 23 45 45 H 1.09005 * 109.47414 * 59.99789 * 25 24 23 46 46 H 1.08999 * 109.47219 * 299.99915 * 26 25 24 47 47 H 1.09004 * 109.47407 * 179.97438 * 26 25 24 48 48 H 1.09001 * 109.47186 * 299.99786 * 27 22 2 49 49 H 1.08999 * 109.47002 * 60.00254 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 0.0570 2.4766 6 8 1.0111 1.0869 2.3633 7 7 1.9846 -0.3920 3.7001 8 6 1.7101 0.3787 4.8268 9 6 1.7807 1.7696 4.7501 10 6 1.5076 2.5313 5.8478 11 6 1.1654 1.9094 7.0646 12 6 0.8879 2.6906 8.2070 13 1 1.0279 2.2737 9.1933 14 6 0.4316 4.0051 8.0615 15 7 -0.0496 4.4075 6.9129 16 14 0.5094 5.1861 9.5068 17 1 1.9202 5.3423 9.9431 18 1 -0.0314 6.5069 9.0964 19 1 -0.2994 4.6480 10.6299 20 6 1.1017 0.5039 7.1357 21 6 1.3709 -0.2442 6.0278 22 6 2.0399 -0.7213 -1.2493 23 6 3.5700 -0.7207 -1.2497 24 6 4.0798 -1.4426 -2.4986 25 6 3.5693 -0.7222 -3.7481 26 6 2.0393 -0.7227 -3.7477 27 6 1.5299 0.0000 -2.4985 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 3.1264 -0.7996 1.2055 32 1 1.6054 -1.7199 1.2951 33 1 2.4228 -1.2521 3.7958 34 1 2.0476 2.2447 3.8177 35 1 1.5587 3.6083 5.7858 36 1 -0.3663 5.3188 6.8121 37 1 0.8404 0.0201 8.0653 38 1 1.3230 -1.3219 6.0809 39 1 1.6765 -1.7489 -1.2493 40 1 3.9329 0.3070 -1.2499 41 1 3.9337 -1.2344 -0.3597 42 1 3.7169 -2.4703 -2.4980 43 1 5.1699 -1.4426 -2.4987 44 1 3.9329 -1.2361 -4.6380 45 1 3.9323 0.3057 -3.7488 46 1 1.6763 -1.7504 -3.7471 47 1 1.6756 -0.2090 -4.6377 48 1 0.4399 0.0000 -2.4985 49 1 1.8933 1.0276 -2.4985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000511012004.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:09 Heat of formation + Delta-G solvation = -71.863396 kcal Electronic energy + Delta-G solvation = -25903.352226 eV Core-core repulsion = 22406.460848 eV Total energy + Delta-G solvation = -3496.891378 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -41.33336 -39.92915 -38.94698 -36.30459 -35.51381 -34.70135 -31.80571 -31.47998 -31.11757 -30.23192 -28.73679 -26.62258 -24.37265 -23.34634 -23.16795 -22.70184 -21.23731 -20.61820 -20.54400 -19.25088 -18.38571 -17.75382 -17.07084 -16.50635 -16.32073 -15.77843 -15.53087 -15.17184 -15.00526 -14.81957 -14.69527 -14.44325 -14.26849 -14.05563 -13.95068 -13.67360 -13.44236 -13.23628 -13.03653 -12.79147 -12.75323 -12.61357 -12.35189 -12.28414 -12.01958 -11.97794 -11.90824 -11.75171 -11.62972 -11.53269 -11.23540 -11.20492 -10.87156 -10.69461 -10.65253 -10.30930 -9.45697 -8.85079 -8.60621 -6.27028 0.83341 1.13358 1.36938 1.46299 1.50729 1.90589 2.20300 2.45279 2.77266 3.71055 3.73964 3.74464 3.86143 4.01136 4.11070 4.24482 4.41604 4.43692 4.45892 4.48763 4.53823 4.59349 4.70337 4.71626 4.75707 4.78845 4.85395 4.95314 4.98155 5.04594 5.10295 5.11415 5.20068 5.24765 5.28870 5.30790 5.33350 5.37387 5.39687 5.46303 5.46961 5.53840 5.62355 5.67657 5.70869 5.88299 6.08663 6.13094 6.34863 6.67696 6.82105 6.92463 7.01691 7.53425 8.33790 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.027717 B = 0.002339 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.966677 B =11967.200331 C =12375.595071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.066 4.066 3 H 0.049 0.951 4 C -0.124 4.124 5 C 0.491 3.509 6 O -0.573 6.573 7 N -0.649 5.649 8 C 0.012 3.988 9 C -0.100 4.100 10 C -0.181 4.181 11 C 0.071 3.929 12 C -0.495 4.495 13 H 0.082 0.918 14 C 0.028 3.972 15 N -0.831 5.831 16 Si 0.986 3.014 17 H -0.258 1.258 18 H -0.271 1.271 19 H -0.256 1.256 20 C -0.224 4.224 21 C -0.103 4.103 22 C -0.070 4.070 23 C -0.120 4.120 24 C -0.116 4.116 25 C -0.122 4.122 26 C -0.116 4.116 27 C -0.118 4.118 28 H 0.062 0.938 29 H 0.037 0.963 30 H 0.058 0.942 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.417 0.583 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.286 0.714 37 H 0.110 0.890 38 H 0.134 0.866 39 H 0.083 0.917 40 H 0.049 0.951 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.052 0.948 46 H 0.067 0.933 47 H 0.061 0.939 48 H 0.063 0.937 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.809 -13.091 -17.723 23.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.085 4.085 3 H 0.068 0.932 4 C -0.164 4.164 5 C 0.281 3.719 6 O -0.452 6.452 7 N -0.295 5.295 8 C -0.082 4.082 9 C -0.120 4.120 10 C -0.201 4.201 11 C 0.068 3.932 12 C -0.525 4.525 13 H 0.100 0.900 14 C -0.186 4.186 15 N -0.457 5.457 16 Si 0.806 3.194 17 H -0.183 1.183 18 H -0.196 1.196 19 H -0.180 1.180 20 C -0.244 4.244 21 C -0.122 4.122 22 C -0.089 4.089 23 C -0.158 4.158 24 C -0.154 4.154 25 C -0.159 4.159 26 C -0.153 4.153 27 C -0.155 4.155 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.255 0.745 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.128 0.872 38 H 0.152 0.848 39 H 0.102 0.898 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.086 0.914 47 H 0.080 0.920 48 H 0.081 0.919 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.270 -12.187 -17.969 22.599 hybrid contribution -0.135 0.835 0.757 1.136 sum 6.135 -11.351 -17.212 21.511 Atomic orbital electron populations 1.21938 0.95725 1.01715 1.01452 1.20850 0.95635 0.98748 0.93226 0.93246 1.21853 1.04356 1.00335 0.89818 1.21689 0.78447 0.86185 0.85614 1.90690 1.40570 1.27128 1.86860 1.43033 1.59620 1.22450 1.04361 1.17262 1.12963 0.89964 0.87986 1.20429 1.01243 0.93384 0.96944 1.20888 1.06224 0.98843 0.94112 1.18009 0.89262 0.92609 0.93276 1.19791 1.40642 0.97794 0.94245 0.89991 1.26879 0.91482 1.00304 0.99908 1.69942 1.29004 1.19228 1.27547 0.85201 0.79908 0.76488 0.77782 1.18264 1.19601 1.17969 1.20839 1.11430 0.93419 0.98673 1.20434 1.00639 0.99219 0.91957 1.21120 0.95497 0.99694 0.92574 1.21699 0.94732 1.00578 0.98751 1.21514 1.00343 0.99533 0.93975 1.21558 0.95614 1.00493 0.98239 1.21525 0.95783 1.00861 0.97177 1.21646 1.00473 0.98926 0.94495 0.91863 0.94427 0.92336 0.86422 0.86277 0.74540 0.89230 0.88661 0.90336 0.87225 0.84832 0.89824 0.93195 0.90730 0.91244 0.91702 0.91394 0.92886 0.91380 0.92001 0.91878 0.93296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 8.58 71.98 0.62 -3.20 16 2 C -0.07 -1.47 1.62 -10.79 -0.02 -1.49 16 3 H 0.05 1.39 7.96 -2.39 -0.02 1.37 16 4 C -0.12 -2.59 4.96 29.85 0.15 -2.44 16 5 C 0.49 16.43 7.26 87.66 0.64 17.06 16 6 O -0.57 -25.51 11.70 -3.02 -0.04 -25.54 16 7 N -0.65 -21.44 5.31 -303.12 -1.61 -23.05 16 8 C 0.01 0.52 6.27 38.56 0.24 0.77 16 9 C -0.10 -5.20 8.57 22.13 0.19 -5.02 16 10 C -0.18 -10.33 8.63 22.48 0.19 -10.14 16 11 C 0.07 3.98 5.57 -21.27 -0.12 3.87 16 12 C -0.50 -27.44 9.04 23.39 0.21 -27.23 16 13 H 0.08 4.27 7.90 -2.91 -0.02 4.25 16 14 C 0.03 1.50 5.15 85.24 0.44 1.94 16 15 N -0.83 -46.58 10.94 21.82 0.24 -46.34 16 16 Si 0.99 39.59 29.59 68.60 2.03 41.62 16 17 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 18 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 19 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 20 C -0.22 -10.95 9.74 22.48 0.22 -10.74 16 21 C -0.10 -4.38 9.90 22.13 0.22 -4.16 16 22 C -0.07 -1.13 1.78 -10.79 -0.02 -1.15 16 23 C -0.12 -1.75 4.86 30.59 0.15 -1.60 16 24 C -0.12 -1.40 5.92 30.59 0.18 -1.22 16 25 C -0.12 -1.52 5.92 30.59 0.18 -1.34 16 26 C -0.12 -1.52 5.93 30.61 0.18 -1.34 16 27 C -0.12 -1.94 4.85 30.61 0.15 -1.79 16 28 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.04 1.27 5.95 -2.38 -0.01 1.25 16 30 H 0.06 1.36 6.43 -2.39 -0.02 1.35 16 31 H 0.12 1.89 6.18 -2.38 -0.01 1.88 16 32 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.42 9.72 8.82 -92.70 -0.82 8.90 16 34 H 0.09 4.76 6.48 -2.91 -0.02 4.74 16 35 H 0.10 5.78 6.18 -2.91 -0.02 5.76 16 36 H 0.29 14.64 8.30 -92.70 -0.77 13.87 16 37 H 0.11 4.93 8.06 -2.91 -0.02 4.90 16 38 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 39 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 0.93 6.32 -2.39 -0.02 0.92 16 42 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 45 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 46 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.06 1.06 6.43 -2.39 -0.02 1.05 16 49 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -70.15 376.02 4.55 -65.60 By element: Atomic # 1 Polarization: 36.81 SS G_CDS: 0.12 Total: 36.93 kcal Atomic # 6 Polarization: -53.01 SS G_CDS: 3.80 Total: -49.21 kcal Atomic # 7 Polarization: -68.03 SS G_CDS: -1.37 Total: -69.40 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.04 Total: -25.54 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -70.15 4.55 -65.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000511012004.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.261 kcal (2) G-P(sol) polarization free energy of solvation -70.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds