Wall clock time and date at job start Tue Mar 31 2020 12:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35834 * 116.99985 * 2 1 4 4 C 1.38548 * 120.12881 * 359.72216 * 3 2 1 5 5 C 1.38197 * 120.08316 * 179.75205 * 4 3 2 6 6 C 1.38416 * 120.34779 * 0.54785 * 5 4 3 7 7 C 1.37958 * 120.25971 * 359.70480 * 6 5 4 8 8 C 1.39515 * 119.90880 * 0.02562 * 7 6 5 9 9 C 1.47731 * 120.17117 * 180.02562 * 8 7 6 10 10 C 1.32610 * 119.99864 * 359.97438 * 9 8 7 11 11 C 1.50699 * 120.00081 * 179.97438 * 10 9 8 12 12 N 1.46900 * 109.47303 * 125.00308 * 11 10 9 13 13 C 1.46849 * 110.99606 * 294.20854 * 12 11 10 14 14 C 1.53039 * 109.52083 * 174.16121 * 13 12 11 15 15 C 1.53120 * 109.27955 * 59.17874 * 14 13 12 16 16 C 1.52993 * 109.52475 * 182.43878 * 15 14 13 17 17 C 1.50706 * 109.47342 * 294.68752 * 16 15 14 18 18 H 1.07998 * 119.99617 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99980 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00336 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99778 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47036 * 89.99797 * 21 19 17 23 23 H 1.48507 * 109.47093 * 209.99439 * 21 19 17 24 24 H 1.48500 * 109.47127 * 329.99518 * 21 19 17 25 25 C 1.53112 * 109.16257 * 302.34948 * 15 14 13 26 26 C 1.46845 * 111.00062 * 170.00211 * 12 11 10 27 27 H 1.08999 * 109.47144 * 300.00227 * 1 2 3 28 28 H 1.08998 * 109.47043 * 59.99826 * 1 2 3 29 29 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.96117 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.82588 * 180.29998 * 5 4 3 32 32 H 1.07995 * 119.87035 * 179.72401 * 6 5 4 33 33 H 1.07996 * 120.04599 * 179.97438 * 7 6 5 34 34 H 1.08000 * 119.99946 * 179.97438 * 9 8 7 35 35 H 1.08000 * 120.00190 * 0.02562 * 10 9 8 36 36 H 1.09006 * 109.47185 * 245.00038 * 11 10 9 37 37 H 1.09004 * 109.46986 * 4.99644 * 11 10 9 38 38 H 1.09003 * 109.46175 * 294.17836 * 13 12 11 39 39 H 1.09003 * 109.45957 * 54.14715 * 13 12 11 40 40 H 1.09000 * 109.50357 * 299.23695 * 14 13 12 41 41 H 1.09001 * 109.53385 * 179.13893 * 14 13 12 42 42 H 1.09004 * 109.57237 * 62.28257 * 15 14 13 43 43 H 1.09001 * 109.47281 * 54.68468 * 16 15 14 44 44 H 1.08995 * 109.47377 * 174.68781 * 16 15 14 45 45 H 0.97004 * 120.00304 * 180.02562 * 20 19 17 46 46 H 1.09003 * 109.49944 * 297.71005 * 25 15 14 47 47 H 1.08996 * 109.53702 * 177.61326 * 25 15 14 48 48 H 1.09003 * 109.46149 * 305.85383 * 26 12 11 49 49 H 1.09007 * 109.46216 * 65.83093 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.2937 2.3739 -0.0058 5 6 1.9221 3.6048 -0.0006 6 6 3.3039 3.6846 -0.0010 7 6 4.0666 2.5350 -0.0005 8 6 3.4435 1.2867 -0.0001 9 6 4.2546 0.0520 0.0011 10 6 5.5785 0.1284 0.0012 11 6 6.4060 -1.1311 0.0030 12 7 7.3390 -1.1056 -1.1314 13 6 6.6161 -1.1580 -2.4086 14 6 7.6050 -0.9834 -3.5634 15 6 8.6542 -2.0970 -3.5033 16 6 9.6809 -1.8930 -4.6191 17 6 9.0085 -2.0606 -5.9574 18 1 7.9543 -2.2902 -6.0070 19 6 9.7392 -1.9220 -7.1182 20 7 11.0230 -1.6430 -7.0578 21 14 8.9058 -2.1305 -8.7770 22 1 8.3886 -0.8175 -9.2396 23 1 9.8875 -2.6508 -9.7623 24 1 7.7788 -3.0888 -8.6477 25 6 9.3590 -2.0508 -2.1448 26 6 8.3193 -2.1944 -1.0310 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2151 2.3191 -0.0099 31 1 1.3318 4.5092 -0.0003 32 1 3.7869 4.6505 -0.0015 33 1 5.1446 2.6013 -0.0012 34 1 3.7694 -0.9128 0.0018 35 1 6.0638 1.0933 0.0009 36 1 6.9683 -1.1951 0.9346 37 1 5.7498 -1.9970 -0.0855 38 1 6.1143 -2.1211 -2.5026 39 1 5.8761 -0.3583 -2.4400 40 1 8.0973 -0.0147 -3.4777 41 1 7.0708 -1.0376 -4.5120 42 1 8.1676 -3.0644 -3.6285 43 1 10.1015 -0.8900 -4.5470 44 1 10.4782 -2.6294 -4.5184 45 1 11.5370 -1.5451 -7.8746 46 1 9.8788 -1.0989 -2.0368 47 1 10.0778 -2.8675 -2.0791 48 1 8.8162 -2.1475 -0.0620 49 1 7.8094 -3.1526 -1.1317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517148086.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:40 Heat of formation + Delta-G solvation = -11.310557 kcal Electronic energy + Delta-G solvation = -25485.593615 eV Core-core repulsion = 21991.328005 eV Total energy + Delta-G solvation = -3494.265610 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 3.42 seconds Orbital eigenvalues (eV) -40.40727 -38.78195 -37.70356 -35.49027 -33.78257 -32.21217 -30.46721 -30.39587 -30.10713 -28.01299 -27.39363 -25.39315 -23.54307 -22.79697 -22.43153 -21.84089 -20.52551 -19.36882 -18.79921 -18.37456 -16.61686 -16.22498 -16.06415 -16.03017 -15.41096 -14.86628 -14.69993 -14.44191 -14.35194 -13.94322 -13.73327 -13.47106 -13.11645 -13.07278 -12.83590 -12.42303 -12.23898 -12.06056 -12.00756 -11.79307 -11.53663 -11.43047 -11.18965 -11.05802 -10.91036 -10.76758 -10.57066 -10.54197 -10.31611 -10.17095 -9.87948 -9.47033 -8.98748 -8.84214 -8.80771 -8.28324 -8.05561 -7.95024 -5.93142 -3.94281 0.75138 1.19166 2.40271 2.97612 3.35512 3.41714 3.44947 3.67687 4.19110 4.48449 4.51233 4.53329 4.73251 4.78847 4.80883 4.97990 5.10472 5.14095 5.15937 5.24688 5.37840 5.40668 5.42306 5.50277 5.54934 5.66047 5.73568 5.79853 5.84831 5.96907 6.00666 6.06361 6.09359 6.21034 6.28685 6.32455 6.47312 6.49985 6.58980 6.66787 6.71666 6.76819 7.05372 7.12553 7.17603 7.26484 7.41119 7.46704 7.75776 7.92864 8.08140 8.51544 9.12381 9.68951 11.18235 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014047 B = 0.002512 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.886268 B =11141.613510 C =11928.754483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.132 3.868 4 C -0.209 4.209 5 C -0.085 4.085 6 C -0.153 4.153 7 C -0.078 4.078 8 C -0.076 4.076 9 C -0.118 4.118 10 C -0.125 4.125 11 C 0.082 3.918 12 N -0.533 5.533 13 C 0.057 3.943 14 C -0.099 4.099 15 C -0.082 4.082 16 C 0.028 3.972 17 C -0.513 4.513 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.888 3.112 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.275 1.275 25 C -0.112 4.112 26 C 0.059 3.941 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.134 0.866 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.081 0.919 37 H 0.035 0.965 38 H 0.025 0.975 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.016 0.984 44 H 0.014 0.986 45 H 0.259 0.741 46 H 0.065 0.935 47 H 0.060 0.940 48 H 0.065 0.935 49 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.356 6.871 18.891 27.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.087 3.913 4 C -0.228 4.228 5 C -0.104 4.104 6 C -0.172 4.172 7 C -0.096 4.096 8 C -0.077 4.077 9 C -0.137 4.137 10 C -0.144 4.144 11 C -0.045 4.045 12 N -0.258 5.258 13 C -0.071 4.071 14 C -0.137 4.137 15 C -0.100 4.100 16 C -0.009 4.009 17 C -0.551 4.551 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.716 3.284 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.149 4.149 26 C -0.068 4.068 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.152 0.848 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.099 0.901 37 H 0.053 0.947 38 H 0.044 0.956 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.035 0.965 44 H 0.032 0.968 45 H 0.069 0.931 46 H 0.084 0.916 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -18.860 7.122 18.791 27.560 hybrid contribution -1.188 -0.671 -1.067 1.732 sum -20.048 6.452 17.724 27.526 Atomic orbital electron populations 1.23067 0.78459 1.04020 1.01263 1.86066 1.21209 1.26818 1.88407 1.19078 0.91612 0.84236 0.96389 1.21155 0.99919 0.92352 1.09369 1.20970 0.94749 0.96852 0.97779 1.21014 0.93812 0.98524 1.03813 1.21248 1.00327 0.90825 0.97221 1.18414 0.89623 0.94167 1.05478 1.21439 0.93584 0.96092 1.02601 1.23281 0.93930 0.99438 0.97726 1.21122 0.94028 0.94342 0.95010 1.61952 1.15868 1.46178 1.01791 1.22207 0.96219 0.99356 0.89290 1.21543 0.96441 0.99682 0.96031 1.21233 0.97095 0.97251 0.94444 1.19115 0.93286 0.97023 0.91469 1.21265 0.95419 1.47316 0.91125 0.92736 1.25015 0.94822 0.95579 0.99102 1.69967 1.06555 1.49286 1.27832 0.86663 0.79255 0.78299 0.84191 1.20726 1.21336 1.19967 1.21686 0.96838 1.01847 0.94561 1.22111 0.93917 0.91358 0.99460 0.92731 0.92619 0.88182 0.85540 0.85906 0.85726 0.84794 0.86332 0.86405 0.90088 0.94717 0.95633 0.91426 0.91909 0.91023 0.93123 0.96522 0.96796 0.93138 0.91594 0.92171 0.91641 0.95451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.31 9.68 -19.22 -0.19 -3.49 16 3 C 0.13 1.47 6.69 -38.81 -0.26 1.21 16 4 C -0.21 -1.93 9.03 -39.48 -0.36 -2.28 16 5 C -0.09 -0.74 10.03 -39.53 -0.40 -1.13 16 6 C -0.15 -1.41 10.03 -39.62 -0.40 -1.81 16 7 C -0.08 -0.82 9.40 -39.21 -0.37 -1.19 16 8 C -0.08 -0.89 5.88 -104.88 -0.62 -1.51 16 9 C -0.12 -1.40 9.26 -37.61 -0.35 -1.75 16 10 C -0.13 -1.47 7.94 -36.21 -0.29 -1.76 16 11 C 0.08 1.02 5.41 -4.98 -0.03 0.99 16 12 N -0.53 -7.99 4.65 -236.10 -1.10 -9.09 16 13 C 0.06 0.93 5.31 -3.83 -0.02 0.91 16 14 C -0.10 -1.94 5.15 -26.65 -0.14 -2.07 16 15 C -0.08 -1.71 2.20 -90.50 -0.20 -1.91 16 16 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 17 C -0.51 -14.54 8.44 -34.44 -0.29 -14.83 16 18 H 0.05 1.51 7.08 -52.49 -0.37 1.14 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 21 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 25 C -0.11 -1.98 5.38 -26.65 -0.14 -2.12 16 26 C 0.06 0.89 5.46 -3.84 -0.02 0.87 16 27 H 0.05 0.28 7.67 -51.93 -0.40 -0.12 16 28 H 0.06 0.31 7.65 -51.93 -0.40 -0.09 16 29 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.13 0.87 6.30 -52.48 -0.33 0.54 16 31 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 32 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 33 H 0.13 1.25 6.17 -52.49 -0.32 0.93 16 34 H 0.12 1.43 7.45 -52.49 -0.39 1.04 16 35 H 0.12 1.34 6.04 -52.49 -0.32 1.02 16 36 H 0.08 0.89 7.99 -51.93 -0.41 0.48 16 37 H 0.03 0.43 7.80 -51.93 -0.40 0.02 16 38 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 1.07 7.10 -51.93 -0.37 0.70 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.07 1.49 7.05 -51.93 -0.37 1.12 16 42 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.07 0.86 8.02 -51.93 -0.42 0.44 16 49 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 387.83 15.07 5.84 5.84 Total: -1.00 -31.67 387.83 -11.11 -42.78 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -8.29 Total: -1.30 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: -3.10 Total: -25.11 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: -0.36 Total: -35.66 kcal Atomic # 8 Polarization: -3.31 SS G_CDS: -0.19 Total: -3.49 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.67 -11.11 -42.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517148086.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.467 kcal (2) G-P(sol) polarization free energy of solvation -31.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.42 seconds