Wall clock time and date at job start Tue Mar 31 2020 12:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35834 * 116.99985 * 2 1 4 4 C 1.38548 * 120.12881 * 359.72216 * 3 2 1 5 5 C 1.38197 * 120.08316 * 179.75205 * 4 3 2 6 6 C 1.38416 * 120.34779 * 0.54785 * 5 4 3 7 7 C 1.37958 * 120.25971 * 359.70480 * 6 5 4 8 8 C 1.39515 * 119.90880 * 0.02562 * 7 6 5 9 9 C 1.47731 * 120.17117 * 180.02562 * 8 7 6 10 10 C 1.32610 * 119.99864 * 359.97438 * 9 8 7 11 11 C 1.50699 * 120.00081 * 179.97438 * 10 9 8 12 12 N 1.46900 * 109.47303 * 125.00308 * 11 10 9 13 13 C 1.46849 * 110.99606 * 294.20854 * 12 11 10 14 14 C 1.53039 * 109.52083 * 174.16121 * 13 12 11 15 15 C 1.53120 * 109.27955 * 59.17874 * 14 13 12 16 16 C 1.52993 * 109.52475 * 182.43878 * 15 14 13 17 17 C 1.50706 * 109.47342 * 294.68752 * 16 15 14 18 18 H 1.07998 * 119.99617 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99980 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00336 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99778 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47036 * 89.99797 * 21 19 17 23 23 H 1.48507 * 109.47093 * 209.99439 * 21 19 17 24 24 H 1.48500 * 109.47127 * 329.99518 * 21 19 17 25 25 C 1.53112 * 109.16257 * 302.34948 * 15 14 13 26 26 C 1.46845 * 111.00062 * 170.00211 * 12 11 10 27 27 H 1.08999 * 109.47144 * 300.00227 * 1 2 3 28 28 H 1.08998 * 109.47043 * 59.99826 * 1 2 3 29 29 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.96117 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.82588 * 180.29998 * 5 4 3 32 32 H 1.07995 * 119.87035 * 179.72401 * 6 5 4 33 33 H 1.07996 * 120.04599 * 179.97438 * 7 6 5 34 34 H 1.08000 * 119.99946 * 179.97438 * 9 8 7 35 35 H 1.08000 * 120.00190 * 0.02562 * 10 9 8 36 36 H 1.09006 * 109.47185 * 245.00038 * 11 10 9 37 37 H 1.09004 * 109.46986 * 4.99644 * 11 10 9 38 38 H 1.09003 * 109.46175 * 294.17836 * 13 12 11 39 39 H 1.09003 * 109.45957 * 54.14715 * 13 12 11 40 40 H 1.09000 * 109.50357 * 299.23695 * 14 13 12 41 41 H 1.09001 * 109.53385 * 179.13893 * 14 13 12 42 42 H 1.09004 * 109.57237 * 62.28257 * 15 14 13 43 43 H 1.09001 * 109.47281 * 54.68468 * 16 15 14 44 44 H 1.08995 * 109.47377 * 174.68781 * 16 15 14 45 45 H 0.97004 * 120.00304 * 180.02562 * 20 19 17 46 46 H 1.09003 * 109.49944 * 297.71005 * 25 15 14 47 47 H 1.08996 * 109.53702 * 177.61326 * 25 15 14 48 48 H 1.09003 * 109.46149 * 305.85383 * 26 12 11 49 49 H 1.09007 * 109.46216 * 65.83093 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.2937 2.3739 -0.0058 5 6 1.9221 3.6048 -0.0006 6 6 3.3039 3.6846 -0.0010 7 6 4.0666 2.5350 -0.0005 8 6 3.4435 1.2867 -0.0001 9 6 4.2546 0.0520 0.0011 10 6 5.5785 0.1284 0.0012 11 6 6.4060 -1.1311 0.0030 12 7 7.3390 -1.1056 -1.1314 13 6 6.6161 -1.1580 -2.4086 14 6 7.6050 -0.9834 -3.5634 15 6 8.6542 -2.0970 -3.5033 16 6 9.6809 -1.8930 -4.6191 17 6 9.0085 -2.0606 -5.9574 18 1 7.9543 -2.2902 -6.0070 19 6 9.7392 -1.9220 -7.1182 20 7 11.0230 -1.6430 -7.0578 21 14 8.9058 -2.1305 -8.7770 22 1 8.3886 -0.8175 -9.2396 23 1 9.8875 -2.6508 -9.7623 24 1 7.7788 -3.0888 -8.6477 25 6 9.3590 -2.0508 -2.1448 26 6 8.3193 -2.1944 -1.0310 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2151 2.3191 -0.0099 31 1 1.3318 4.5092 -0.0003 32 1 3.7869 4.6505 -0.0015 33 1 5.1446 2.6013 -0.0012 34 1 3.7694 -0.9128 0.0018 35 1 6.0638 1.0933 0.0009 36 1 6.9683 -1.1951 0.9346 37 1 5.7498 -1.9970 -0.0855 38 1 6.1143 -2.1211 -2.5026 39 1 5.8761 -0.3583 -2.4400 40 1 8.0973 -0.0147 -3.4777 41 1 7.0708 -1.0376 -4.5120 42 1 8.1676 -3.0644 -3.6285 43 1 10.1015 -0.8900 -4.5470 44 1 10.4782 -2.6294 -4.5184 45 1 11.5370 -1.5451 -7.8746 46 1 9.8788 -1.0989 -2.0368 47 1 10.0778 -2.8675 -2.0791 48 1 8.8162 -2.1475 -0.0620 49 1 7.8094 -3.1526 -1.1317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517148086.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:38 Heat of formation + Delta-G solvation = -28.096267 kcal Electronic energy + Delta-G solvation = -25486.321498 eV Core-core repulsion = 21991.328005 eV Total energy + Delta-G solvation = -3494.993493 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.10556 -40.11095 -38.41860 -36.77534 -35.22663 -33.98220 -31.76088 -31.29389 -31.07773 -29.50991 -28.10275 -26.75718 -25.06939 -24.05536 -23.43591 -22.76964 -22.04940 -20.49710 -20.10947 -19.06680 -18.42033 -17.38991 -16.94473 -16.65948 -16.61951 -16.35127 -15.96255 -15.41315 -15.37563 -15.10662 -14.94337 -14.66656 -14.52801 -14.06272 -13.95492 -13.78326 -13.51106 -13.29135 -13.18881 -12.94151 -12.77562 -12.70673 -12.57826 -12.30352 -12.17997 -12.02669 -12.00267 -11.94662 -11.70997 -11.61285 -11.27018 -11.07936 -10.86364 -10.68697 -10.51561 -9.55161 -9.23102 -8.75272 -8.16896 -6.26377 -0.01516 0.47628 1.39011 1.40275 1.51064 1.57157 2.36826 2.41846 2.91148 3.08106 3.16160 3.70510 3.86381 4.01202 4.05567 4.08217 4.10487 4.19908 4.29173 4.33988 4.38095 4.39570 4.45968 4.49610 4.59417 4.65199 4.68947 4.71535 4.73733 4.78653 4.82525 4.87638 4.96950 5.08947 5.11873 5.16666 5.24421 5.38345 5.39760 5.42143 5.45775 5.58204 5.58641 5.70596 5.78724 5.81882 5.89366 5.91695 6.19837 6.25276 6.32092 6.45765 6.89594 7.41764 8.95031 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014047 B = 0.002512 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.886268 B =11141.613510 C =11928.754483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.117 3.883 4 C -0.214 4.214 5 C -0.084 4.084 6 C -0.161 4.161 7 C -0.089 4.089 8 C -0.106 4.106 9 C -0.114 4.114 10 C -0.132 4.132 11 C 0.086 3.914 12 N -0.541 5.541 13 C 0.070 3.930 14 C -0.093 4.093 15 C -0.075 4.075 16 C 0.034 3.966 17 C -0.529 4.529 18 H 0.058 0.942 19 C -0.002 4.002 20 N -0.935 5.935 21 Si 0.960 3.040 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.264 1.264 25 C -0.107 4.107 26 C 0.066 3.934 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.115 0.885 30 H 0.149 0.851 31 H 0.151 0.849 32 H 0.144 0.856 33 H 0.138 0.862 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.099 0.901 37 H 0.037 0.963 38 H 0.026 0.974 39 H 0.074 0.926 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.046 0.954 43 H -0.012 1.012 44 H -0.013 1.013 45 H 0.262 0.738 46 H 0.056 0.944 47 H 0.063 0.937 48 H 0.093 0.907 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.632 7.377 19.730 30.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.072 3.928 4 C -0.232 4.232 5 C -0.102 4.102 6 C -0.179 4.179 7 C -0.107 4.107 8 C -0.107 4.107 9 C -0.133 4.133 10 C -0.151 4.151 11 C -0.040 4.040 12 N -0.266 5.266 13 C -0.058 4.058 14 C -0.131 4.131 15 C -0.093 4.093 16 C -0.003 4.003 17 C -0.568 4.568 18 H 0.076 0.924 19 C -0.199 4.199 20 N -0.576 5.576 21 Si 0.784 3.216 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.188 1.188 25 C -0.145 4.145 26 C -0.062 4.062 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.133 0.867 30 H 0.167 0.833 31 H 0.169 0.831 32 H 0.162 0.838 33 H 0.156 0.844 34 H 0.131 0.869 35 H 0.138 0.862 36 H 0.117 0.883 37 H 0.056 0.944 38 H 0.044 0.956 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.006 0.994 44 H 0.005 0.995 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.112 0.888 49 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -21.154 7.625 19.648 29.862 hybrid contribution -0.522 -0.787 -1.303 1.609 sum -21.676 6.839 18.346 29.209 Atomic orbital electron populations 1.23332 0.76548 1.05426 1.02266 1.86029 1.23311 1.26995 1.88450 1.19307 0.91749 0.85065 0.96713 1.21469 1.01102 0.91967 1.08675 1.21367 0.94851 0.97751 0.96265 1.21329 0.94331 0.98956 1.03307 1.21421 1.00819 0.91023 0.97401 1.18607 0.90327 0.94462 1.07293 1.21451 0.93691 0.96186 1.01992 1.23219 0.93805 0.99344 0.98706 1.21155 0.93775 0.94663 0.94430 1.61905 1.16498 1.46308 1.01895 1.21976 0.95230 0.99642 0.88904 1.21410 0.96487 0.98324 0.96882 1.21086 0.96265 0.97455 0.94542 1.19002 0.93767 0.94358 0.93147 1.21647 0.95735 1.47061 0.92310 0.92367 1.25950 0.95451 0.95147 1.03400 1.70103 1.08157 1.50253 1.29069 0.85528 0.78375 0.78672 0.78978 1.19860 1.20795 1.18838 1.21599 0.97569 1.01544 0.93756 1.22054 0.93232 0.91567 0.99335 0.91407 0.91836 0.86721 0.83335 0.83148 0.83778 0.84402 0.86931 0.86169 0.88270 0.94440 0.95553 0.90721 0.93213 0.92844 0.93577 0.99364 0.99469 0.92931 0.92511 0.91811 0.88850 0.94953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -6.84 9.68 -91.69 -0.89 -7.72 16 3 C 0.12 2.50 6.69 22.77 0.15 2.65 16 4 C -0.21 -3.54 9.03 22.33 0.20 -3.33 16 5 C -0.08 -1.26 10.03 22.30 0.22 -1.04 16 6 C -0.16 -2.68 10.03 22.25 0.22 -2.46 16 7 C -0.09 -1.79 9.40 22.51 0.21 -1.58 16 8 C -0.11 -2.44 5.88 -20.03 -0.12 -2.56 16 9 C -0.11 -2.66 9.26 23.62 0.22 -2.44 16 10 C -0.13 -2.98 7.94 24.53 0.19 -2.78 16 11 C 0.09 1.97 5.41 85.56 0.46 2.43 16 12 N -0.54 -15.41 4.65 -900.89 -4.19 -19.60 16 13 C 0.07 2.25 5.31 86.33 0.46 2.71 16 14 C -0.09 -3.69 5.15 30.65 0.16 -3.54 16 15 C -0.07 -3.20 2.20 -10.72 -0.02 -3.22 16 16 C 0.03 1.87 4.45 29.85 0.13 2.00 16 17 C -0.53 -30.75 8.44 25.60 0.22 -30.53 16 18 H 0.06 3.26 7.08 -2.91 -0.02 3.24 16 19 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 20 N -0.93 -58.32 13.29 21.45 0.28 -58.04 16 21 Si 0.96 45.39 29.54 68.60 2.03 47.42 16 22 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 23 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 24 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 25 C -0.11 -3.78 5.38 30.64 0.16 -3.61 16 26 C 0.07 1.84 5.46 86.33 0.47 2.32 16 27 H 0.07 0.56 7.67 -2.39 -0.02 0.54 16 28 H 0.06 0.60 7.65 -2.39 -0.02 0.58 16 29 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.15 1.66 6.30 -2.91 -0.02 1.64 16 31 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 32 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 33 H 0.14 2.52 6.17 -2.91 -0.02 2.50 16 34 H 0.11 2.69 7.45 -2.91 -0.02 2.67 16 35 H 0.12 2.63 6.04 -2.91 -0.02 2.61 16 36 H 0.10 1.91 7.99 -2.38 -0.02 1.89 16 37 H 0.04 0.85 7.80 -2.39 -0.02 0.83 16 38 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.07 2.30 7.10 -2.39 -0.02 2.28 16 40 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.05 2.27 7.05 -2.39 -0.02 2.26 16 42 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 43 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 44 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 45 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 46 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 48 H 0.09 2.16 8.02 -2.39 -0.02 2.14 16 49 H 0.03 0.89 8.14 -2.38 -0.02 0.88 16 Total: -1.00 -69.62 387.83 3.07 -66.55 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.91 Total: 14.73 kcal Atomic # 6 Polarization: -48.27 SS G_CDS: 4.92 Total: -43.35 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -3.90 Total: -77.63 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.89 Total: -7.72 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -69.62 3.07 -66.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517148086.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.458 kcal (2) G-P(sol) polarization free energy of solvation -69.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds