Wall clock time and date at job start Tue Mar 31 2020 11:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46930 * 2 1 4 4 C 1.53001 * 109.46796 * 119.99803 * 2 1 3 5 5 C 1.50695 * 109.47441 * 182.60067 * 4 2 1 6 6 H 1.08005 * 119.99532 * 5.27195 * 5 4 2 7 7 C 1.37876 * 120.00279 * 185.27000 * 5 4 2 8 8 N 1.31510 * 119.99993 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99949 * 180.02562 * 7 5 4 10 10 H 1.48509 * 109.47055 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47392 * 119.99956 * 9 7 5 12 12 H 1.48500 * 109.47040 * 240.00385 * 9 7 5 13 13 N 1.46900 * 109.47190 * 239.99199 * 2 1 3 14 14 C 1.46852 * 110.99553 * 70.80546 * 13 2 1 15 15 C 1.53042 * 109.53332 * 174.09063 * 14 13 2 16 16 C 1.53136 * 109.24974 * 59.28311 * 15 14 13 17 17 C 1.52988 * 109.18085 * 302.49550 * 16 15 14 18 18 C 1.53276 * 109.46631 * 177.54890 * 17 16 15 19 19 C 1.53096 * 108.29349 * 55.26682 * 18 17 16 20 20 C 1.50769 * 109.68882 * 48.01567 * 19 18 17 21 21 C 1.38522 * 118.73094 * 162.31577 * 20 19 18 22 22 C 1.38096 * 120.31713 * 179.46485 * 21 20 19 23 23 C 1.38295 * 119.98911 * 0.60132 * 22 21 20 24 24 C 1.37961 * 119.95093 * 359.47384 * 23 22 21 25 25 C 1.38372 * 121.45658 * 342.19619 * 20 19 18 26 26 O 1.35878 * 121.78183 * 0.53512 * 25 20 19 27 27 C 1.46867 * 111.00376 * 306.60293 * 13 2 1 28 28 H 1.09002 * 109.47378 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47128 * 300.00662 * 1 2 3 30 30 H 1.09000 * 109.46739 * 60.00232 * 1 2 3 31 31 H 1.09001 * 109.46975 * 302.60217 * 4 2 1 32 32 H 1.09005 * 109.47514 * 62.60155 * 4 2 1 33 33 H 0.97004 * 119.99815 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.45803 * 54.07965 * 14 13 2 35 35 H 1.08999 * 109.46165 * 294.11722 * 14 13 2 36 36 H 1.08994 * 109.51020 * 299.34863 * 15 14 13 37 37 H 1.08998 * 109.54551 * 179.23566 * 15 14 13 38 38 H 1.09000 * 109.51839 * 182.58710 * 16 15 14 39 39 H 1.09007 * 109.57204 * 62.43801 * 16 15 14 40 40 H 1.09001 * 109.70284 * 295.56234 * 18 17 16 41 41 H 1.08997 * 109.69960 * 174.96545 * 18 17 16 42 42 H 1.09007 * 109.43256 * 287.95249 * 19 18 17 43 43 H 1.08994 * 109.43435 * 168.08995 * 19 18 17 44 44 H 1.07997 * 119.83721 * 359.78927 * 21 20 19 45 45 H 1.07998 * 120.00811 * 180.32000 * 22 21 20 46 46 H 1.08007 * 120.01771 * 179.74096 * 23 22 21 47 47 H 1.08005 * 119.89358 * 180.30123 * 24 23 22 48 48 H 1.08994 * 109.45989 * 65.58536 * 27 13 2 49 49 H 1.09002 * 109.45053 * 305.63801 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5455 -0.6657 1.2821 6 1 4.0811 -0.0943 0.5384 7 6 4.2393 -1.3443 2.2615 8 7 3.5871 -2.0405 3.1668 9 14 6.1055 -1.2749 2.3025 10 1 6.5942 -0.4312 1.1823 11 1 6.5510 -0.6912 3.5933 12 1 6.6551 -2.6475 2.1639 13 7 2.0197 -0.6927 -1.1993 14 6 1.7701 0.1053 -2.4066 15 6 2.4212 -0.5747 -3.6131 16 6 1.8338 -1.9792 -3.7788 17 6 2.0586 -2.7732 -2.4906 18 6 1.4194 -4.1596 -2.6270 19 6 1.9913 -4.8316 -3.8781 20 6 3.4935 -4.7034 -3.8818 21 6 4.2312 -5.5402 -4.7030 22 6 5.6082 -5.4435 -4.7405 23 6 6.2579 -4.5163 -3.9463 24 6 5.5286 -3.6812 -3.1252 25 6 4.1407 -3.7722 -3.0889 26 8 3.4575 -2.9374 -2.2627 27 6 1.4244 -2.0303 -1.3146 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6390 -0.2350 2.1386 32 1 1.7152 -1.7615 1.2264 33 1 4.0752 -2.5182 3.8556 34 1 2.1949 1.1009 -2.2780 35 1 0.6959 0.1876 -2.5719 36 1 3.4970 -0.6465 -3.4538 37 1 2.2245 0.0103 -4.5115 38 1 2.3273 -2.4847 -4.6090 39 1 0.7650 -1.9066 -3.9801 40 1 0.3386 -4.0579 -2.7260 41 1 1.6533 -4.7602 -1.7480 42 1 1.5840 -4.3496 -4.7669 43 1 1.7172 -5.8865 -3.8806 44 1 3.7265 -6.2682 -5.3209 45 1 6.1781 -6.0949 -5.3864 46 1 7.3352 -4.4431 -3.9720 47 1 6.0366 -2.9541 -2.5090 48 1 0.3512 -1.9371 -1.4804 49 1 1.6025 -2.5874 -0.3948 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528729799.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:14 Heat of formation + Delta-G solvation = -17.310517 kcal Electronic energy + Delta-G solvation = -28294.652102 eV Core-core repulsion = 24800.126314 eV Total energy + Delta-G solvation = -3494.525787 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -40.99619 -38.70596 -36.95954 -34.65198 -33.72497 -32.23047 -31.04418 -30.03019 -29.50146 -27.67091 -27.21521 -24.52835 -23.83524 -22.92384 -22.60830 -22.20985 -20.63672 -18.90539 -18.78844 -17.07011 -16.39952 -16.08015 -15.65044 -15.11297 -14.79652 -14.50889 -14.39410 -14.30791 -14.13071 -13.66066 -13.56725 -13.17111 -13.04472 -12.83700 -12.47463 -12.34295 -12.23303 -11.97657 -11.85305 -11.61099 -11.47778 -11.28232 -11.04453 -10.98909 -10.87170 -10.65032 -10.52600 -10.47360 -10.32709 -10.08135 -9.88659 -9.69395 -9.09856 -8.88097 -8.64503 -8.17461 -7.85543 -7.39113 -5.80461 -3.76326 1.46416 1.63929 3.44845 3.52126 3.56401 3.58104 3.92466 4.42811 4.65390 4.67515 4.77533 4.86760 4.92742 5.12121 5.15615 5.19931 5.22565 5.36103 5.49502 5.57714 5.58376 5.64435 5.69489 5.74184 5.76378 5.80127 5.82440 5.86367 5.88637 6.00025 6.03802 6.07099 6.10190 6.14991 6.23462 6.30499 6.43742 6.49915 6.55193 6.60692 6.64526 6.67645 6.71235 7.00550 7.01873 7.56296 7.72722 7.88097 8.00897 8.06834 8.20635 8.66077 9.28546 9.84894 11.31930 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011018 B = 0.005910 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.592704 B = 4736.391286 C = 6301.941651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.087 3.913 3 H 0.070 0.930 4 C 0.030 3.970 5 C -0.479 4.479 6 H 0.060 0.940 7 C 0.051 3.949 8 N -0.906 5.906 9 Si 0.886 3.114 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.287 1.287 13 N -0.499 5.499 14 C 0.053 3.947 15 C -0.112 4.112 16 C -0.139 4.139 17 C 0.128 3.872 18 C -0.151 4.151 19 C -0.072 4.072 20 C -0.170 4.170 21 C -0.088 4.088 22 C -0.166 4.166 23 C -0.089 4.089 24 C -0.150 4.150 25 C 0.147 3.853 26 O -0.267 6.267 27 C 0.072 3.928 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.039 0.961 31 H 0.014 0.986 32 H 0.021 0.979 33 H 0.255 0.745 34 H 0.070 0.930 35 H 0.022 0.978 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.117 0.883 45 H 0.117 0.883 46 H 0.123 0.877 47 H 0.131 0.869 48 H 0.043 0.957 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.288 -4.081 -17.414 18.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.021 4.021 3 H 0.088 0.912 4 C -0.007 4.007 5 C -0.517 4.517 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.548 5.548 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.216 1.216 12 H -0.214 1.214 13 N -0.222 5.222 14 C -0.076 4.076 15 C -0.150 4.150 16 C -0.177 4.177 17 C 0.090 3.910 18 C -0.189 4.189 19 C -0.109 4.109 20 C -0.171 4.171 21 C -0.106 4.106 22 C -0.184 4.184 23 C -0.107 4.107 24 C -0.169 4.169 25 C 0.101 3.899 26 O -0.180 6.180 27 C -0.056 4.056 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.032 0.968 32 H 0.039 0.961 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.040 0.960 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.141 0.859 47 H 0.149 0.851 48 H 0.061 0.939 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.683 -4.102 -17.048 17.917 hybrid contribution 0.066 -0.165 -0.114 0.212 sum -3.617 -4.267 -17.162 18.051 Atomic orbital electron populations 1.22540 0.99913 1.01211 1.00709 1.21936 0.89864 0.98337 0.91978 0.91211 1.19201 0.96587 0.95360 0.89549 1.21135 0.91296 1.28678 1.10620 0.92190 1.24948 0.97811 0.95939 0.96047 1.69967 1.34890 1.33411 1.16529 0.86612 0.86874 0.77585 0.77386 1.19772 1.21625 1.21373 1.61947 1.58098 1.00963 1.01162 1.22100 0.97065 0.97412 0.90979 1.21500 1.01885 0.94605 0.96990 1.22172 1.01210 0.97097 0.97183 1.21776 0.79709 0.93682 0.95867 1.22239 1.00907 0.96602 0.99128 1.20442 0.90971 1.01229 0.98279 1.19798 0.96030 0.99327 1.01928 1.20804 0.93895 0.98058 0.97831 1.20891 0.94388 1.01018 1.02098 1.20889 0.99509 0.94904 0.95414 1.20712 0.91495 1.02479 1.02198 1.18892 0.91620 0.89415 0.89987 1.86370 1.21352 1.59835 1.50399 1.22035 0.94256 0.91506 0.97816 0.92953 0.92490 0.94171 0.96784 0.96057 0.93550 0.91158 0.95983 0.90575 0.92256 0.91482 0.91289 0.90134 0.90121 0.90767 0.90538 0.86484 0.86491 0.85899 0.85065 0.93884 0.88432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 8.44 37.16 0.31 -2.77 16 2 C 0.09 1.75 2.28 -67.71 -0.15 1.59 16 3 H 0.07 1.43 7.97 -51.93 -0.41 1.02 16 4 C 0.03 0.76 4.35 -27.89 -0.12 0.64 16 5 C -0.48 -13.56 8.77 -34.44 -0.30 -13.86 16 6 H 0.06 1.72 7.75 -52.48 -0.41 1.32 16 7 C 0.05 1.50 5.46 -17.82 -0.10 1.41 16 8 N -0.91 -27.70 13.29 55.43 0.74 -26.97 16 9 Si 0.89 22.75 29.54 -169.99 -5.02 17.73 16 10 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 13 N -0.50 -9.45 4.16 -226.77 -0.94 -10.40 16 14 C 0.05 0.82 5.14 -3.83 -0.02 0.80 16 15 C -0.11 -1.59 5.95 -26.64 -0.16 -1.75 16 16 C -0.14 -1.86 4.23 -26.67 -0.11 -1.97 16 17 C 0.13 2.01 0.70 -90.55 -0.06 1.94 16 18 C -0.15 -1.98 5.08 -26.54 -0.13 -2.12 16 19 C -0.07 -0.85 5.21 -27.80 -0.14 -0.99 16 20 C -0.17 -2.38 5.17 -104.43 -0.54 -2.92 16 21 C -0.09 -1.08 9.66 -39.53 -0.38 -1.46 16 22 C -0.17 -2.00 10.04 -39.61 -0.40 -2.40 16 23 C -0.09 -1.18 10.04 -39.66 -0.40 -1.58 16 24 C -0.15 -2.42 9.94 -39.35 -0.39 -2.81 16 25 C 0.15 2.47 6.00 -39.20 -0.24 2.24 16 26 O -0.27 -5.06 9.10 -19.36 -0.18 -5.23 16 27 C 0.07 1.27 3.51 -3.90 -0.01 1.25 16 28 H 0.05 0.86 6.45 -51.93 -0.33 0.53 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.04 0.59 6.84 -51.93 -0.36 0.23 16 31 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.02 0.57 6.35 -51.93 -0.33 0.25 16 33 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.07 1.09 8.01 -51.93 -0.42 0.68 16 35 H 0.02 0.32 6.90 -51.93 -0.36 -0.04 16 36 H 0.08 1.25 7.84 -51.93 -0.41 0.85 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.88 5.96 -51.93 -0.31 0.57 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.07 0.77 7.05 -51.93 -0.37 0.40 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 45 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 46 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 47 H 0.13 2.19 8.06 -52.48 -0.42 1.77 16 48 H 0.04 0.67 6.56 -51.93 -0.34 0.33 16 49 H 0.10 2.04 6.21 -51.93 -0.32 1.72 16 LS Contribution 368.80 15.07 5.56 5.56 Total: -1.00 -31.45 368.80 -11.35 -42.79 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -8.15 Total: 1.30 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: -3.35 Total: -24.78 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: -0.21 Total: -37.36 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.18 Total: -5.23 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.45 -11.35 -42.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528729799.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.481 kcal (2) G-P(sol) polarization free energy of solvation -31.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds