Wall clock time and date at job start Tue Mar 31 2020 11:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46930 * 2 1 4 4 C 1.53001 * 109.46796 * 119.99803 * 2 1 3 5 5 C 1.50695 * 109.47441 * 182.60067 * 4 2 1 6 6 H 1.08005 * 119.99532 * 5.27195 * 5 4 2 7 7 C 1.37876 * 120.00279 * 185.27000 * 5 4 2 8 8 N 1.31510 * 119.99993 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99949 * 180.02562 * 7 5 4 10 10 H 1.48509 * 109.47055 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47392 * 119.99956 * 9 7 5 12 12 H 1.48500 * 109.47040 * 240.00385 * 9 7 5 13 13 N 1.46900 * 109.47190 * 239.99199 * 2 1 3 14 14 C 1.46852 * 110.99553 * 70.80546 * 13 2 1 15 15 C 1.53042 * 109.53332 * 174.09063 * 14 13 2 16 16 C 1.53136 * 109.24974 * 59.28311 * 15 14 13 17 17 C 1.52988 * 109.18085 * 302.49550 * 16 15 14 18 18 C 1.53276 * 109.46631 * 177.54890 * 17 16 15 19 19 C 1.53096 * 108.29349 * 55.26682 * 18 17 16 20 20 C 1.50769 * 109.68882 * 48.01567 * 19 18 17 21 21 C 1.38522 * 118.73094 * 162.31577 * 20 19 18 22 22 C 1.38096 * 120.31713 * 179.46485 * 21 20 19 23 23 C 1.38295 * 119.98911 * 0.60132 * 22 21 20 24 24 C 1.37961 * 119.95093 * 359.47384 * 23 22 21 25 25 C 1.38372 * 121.45658 * 342.19619 * 20 19 18 26 26 O 1.35878 * 121.78183 * 0.53512 * 25 20 19 27 27 C 1.46867 * 111.00376 * 306.60293 * 13 2 1 28 28 H 1.09002 * 109.47378 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47128 * 300.00662 * 1 2 3 30 30 H 1.09000 * 109.46739 * 60.00232 * 1 2 3 31 31 H 1.09001 * 109.46975 * 302.60217 * 4 2 1 32 32 H 1.09005 * 109.47514 * 62.60155 * 4 2 1 33 33 H 0.97004 * 119.99815 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.45803 * 54.07965 * 14 13 2 35 35 H 1.08999 * 109.46165 * 294.11722 * 14 13 2 36 36 H 1.08994 * 109.51020 * 299.34863 * 15 14 13 37 37 H 1.08998 * 109.54551 * 179.23566 * 15 14 13 38 38 H 1.09000 * 109.51839 * 182.58710 * 16 15 14 39 39 H 1.09007 * 109.57204 * 62.43801 * 16 15 14 40 40 H 1.09001 * 109.70284 * 295.56234 * 18 17 16 41 41 H 1.08997 * 109.69960 * 174.96545 * 18 17 16 42 42 H 1.09007 * 109.43256 * 287.95249 * 19 18 17 43 43 H 1.08994 * 109.43435 * 168.08995 * 19 18 17 44 44 H 1.07997 * 119.83721 * 359.78927 * 21 20 19 45 45 H 1.07998 * 120.00811 * 180.32000 * 22 21 20 46 46 H 1.08007 * 120.01771 * 179.74096 * 23 22 21 47 47 H 1.08005 * 119.89358 * 180.30123 * 24 23 22 48 48 H 1.08994 * 109.45989 * 65.58536 * 27 13 2 49 49 H 1.09002 * 109.45053 * 305.63801 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5455 -0.6657 1.2821 6 1 4.0811 -0.0943 0.5384 7 6 4.2393 -1.3443 2.2615 8 7 3.5871 -2.0405 3.1668 9 14 6.1055 -1.2749 2.3025 10 1 6.5942 -0.4312 1.1823 11 1 6.5510 -0.6912 3.5933 12 1 6.6551 -2.6475 2.1639 13 7 2.0197 -0.6927 -1.1993 14 6 1.7701 0.1053 -2.4066 15 6 2.4212 -0.5747 -3.6131 16 6 1.8338 -1.9792 -3.7788 17 6 2.0586 -2.7732 -2.4906 18 6 1.4194 -4.1596 -2.6270 19 6 1.9913 -4.8316 -3.8781 20 6 3.4935 -4.7034 -3.8818 21 6 4.2312 -5.5402 -4.7030 22 6 5.6082 -5.4435 -4.7405 23 6 6.2579 -4.5163 -3.9463 24 6 5.5286 -3.6812 -3.1252 25 6 4.1407 -3.7722 -3.0889 26 8 3.4575 -2.9374 -2.2627 27 6 1.4244 -2.0303 -1.3146 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6390 -0.2350 2.1386 32 1 1.7152 -1.7615 1.2264 33 1 4.0752 -2.5182 3.8556 34 1 2.1949 1.1009 -2.2780 35 1 0.6959 0.1876 -2.5719 36 1 3.4970 -0.6465 -3.4538 37 1 2.2245 0.0103 -4.5115 38 1 2.3273 -2.4847 -4.6090 39 1 0.7650 -1.9066 -3.9801 40 1 0.3386 -4.0579 -2.7260 41 1 1.6533 -4.7602 -1.7480 42 1 1.5840 -4.3496 -4.7669 43 1 1.7172 -5.8865 -3.8806 44 1 3.7265 -6.2682 -5.3209 45 1 6.1781 -6.0949 -5.3864 46 1 7.3352 -4.4431 -3.9720 47 1 6.0366 -2.9541 -2.5090 48 1 0.3512 -1.9371 -1.4804 49 1 1.6025 -2.5874 -0.3948 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528729799.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:13 Heat of formation + Delta-G solvation = -34.992584 kcal Electronic energy + Delta-G solvation = -28295.418854 eV Core-core repulsion = 24800.126314 eV Total energy + Delta-G solvation = -3495.292539 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.13926 -39.96667 -38.20492 -35.97238 -35.12207 -34.13622 -32.18069 -31.19912 -30.92455 -29.18350 -28.69351 -25.85080 -25.03278 -24.77940 -23.77595 -23.28216 -21.95790 -20.34436 -19.95705 -18.36883 -18.16323 -17.63334 -16.74125 -16.60078 -16.26906 -15.93618 -15.77721 -15.38524 -15.27348 -15.00979 -14.75537 -14.68051 -14.13971 -14.08330 -13.89885 -13.78772 -13.57312 -13.35631 -13.22612 -13.04446 -12.95656 -12.58320 -12.48456 -12.37504 -12.35249 -12.25931 -12.00827 -11.88066 -11.68201 -11.52458 -11.30755 -11.08633 -10.91366 -10.79657 -10.47391 -9.67266 -8.96525 -8.79251 -8.10192 -6.11850 0.42633 0.57649 1.34519 1.37145 1.49258 2.43713 2.45797 2.87027 3.08357 3.27378 3.62149 3.72319 3.78691 3.89620 4.00932 4.11711 4.13299 4.22879 4.27412 4.38662 4.39383 4.46120 4.46850 4.55799 4.59759 4.65147 4.69601 4.70145 4.74667 4.83273 4.91529 4.93568 4.99625 5.04365 5.08751 5.13661 5.17325 5.22509 5.23913 5.34261 5.43556 5.47591 5.50355 5.60154 5.64225 5.72232 5.90076 6.01373 6.33796 6.48386 6.59873 6.81866 7.00362 7.52672 9.02196 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011018 B = 0.005910 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.592704 B = 4736.391286 C = 6301.941651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.094 3.906 3 H 0.063 0.937 4 C 0.037 3.963 5 C -0.483 4.483 6 H 0.050 0.950 7 C -0.003 4.003 8 N -0.940 5.940 9 Si 0.947 3.053 10 H -0.269 1.269 11 H -0.278 1.278 12 H -0.288 1.288 13 N -0.527 5.527 14 C 0.055 3.945 15 C -0.108 4.108 16 C -0.129 4.129 17 C 0.121 3.879 18 C -0.148 4.148 19 C -0.067 4.067 20 C -0.175 4.175 21 C -0.085 4.085 22 C -0.160 4.160 23 C -0.091 4.091 24 C -0.185 4.185 25 C 0.116 3.884 26 O -0.311 6.311 27 C 0.078 3.922 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.070 0.930 31 H -0.009 1.009 32 H -0.004 1.004 33 H 0.256 0.744 34 H 0.066 0.934 35 H 0.047 0.953 36 H 0.042 0.958 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.053 0.947 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.153 0.847 45 H 0.151 0.849 46 H 0.143 0.857 47 H 0.104 0.896 48 H 0.068 0.932 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.286 -4.937 -20.989 22.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.014 4.014 3 H 0.081 0.919 4 C 0.000 4.000 5 C -0.522 4.522 6 H 0.068 0.932 7 C -0.198 4.198 8 N -0.583 5.583 9 Si 0.773 3.227 10 H -0.194 1.194 11 H -0.204 1.204 12 H -0.215 1.215 13 N -0.251 5.251 14 C -0.073 4.073 15 C -0.146 4.146 16 C -0.166 4.166 17 C 0.083 3.917 18 C -0.186 4.186 19 C -0.104 4.104 20 C -0.176 4.176 21 C -0.103 4.103 22 C -0.178 4.178 23 C -0.109 4.109 24 C -0.203 4.203 25 C 0.070 3.930 26 O -0.225 6.225 27 C -0.050 4.050 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.009 0.991 32 H 0.015 0.985 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.116 0.884 40 H 0.126 0.874 41 H 0.072 0.928 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.170 0.830 45 H 0.169 0.831 46 H 0.160 0.840 47 H 0.123 0.877 48 H 0.086 0.914 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.680 -4.948 -20.636 21.731 hybrid contribution 0.428 0.080 1.001 1.091 sum -4.252 -4.868 -19.636 20.672 Atomic orbital electron populations 1.22379 0.96817 1.01708 1.02229 1.21618 0.92304 0.96986 0.90509 0.91873 1.19046 0.95020 0.94333 0.91601 1.21404 0.93067 1.27883 1.09848 0.93196 1.25718 1.02228 0.95891 0.95961 1.70080 1.36511 1.34419 1.17279 0.85664 0.81752 0.77448 0.77792 1.19359 1.20360 1.21455 1.61782 1.59410 1.01937 1.01977 1.22148 0.98612 0.96735 0.89796 1.21471 0.99750 0.95829 0.97514 1.22117 1.02833 0.95828 0.95818 1.21938 0.78677 0.95197 0.95923 1.22227 1.02434 0.94848 0.99081 1.20519 0.89204 1.02600 0.98052 1.20122 0.97621 0.98576 1.01280 1.21248 0.94117 0.97738 0.97180 1.21320 0.94825 1.00310 1.01378 1.21156 1.00513 0.94495 0.94773 1.20793 0.92077 1.03699 1.03771 1.19171 0.91816 0.90680 0.91287 1.86288 1.23103 1.61075 1.52065 1.21938 0.95806 0.90497 0.96784 0.92920 0.92414 0.91130 0.99127 0.98533 0.93487 0.91565 0.93526 0.93905 0.89162 0.90796 0.88435 0.87373 0.92822 0.88370 0.88351 0.82975 0.83136 0.83967 0.87744 0.91446 0.93321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.61 8.44 71.98 0.61 -5.00 16 2 C 0.09 3.89 2.28 44.92 0.10 3.99 16 3 H 0.06 2.65 7.97 -2.39 -0.02 2.63 16 4 C 0.04 1.99 4.35 29.85 0.13 2.12 16 5 C -0.48 -28.84 8.77 25.60 0.22 -28.62 16 6 H 0.05 3.01 7.75 -2.91 -0.02 2.99 16 7 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 8 N -0.94 -60.00 13.29 21.45 0.28 -59.71 16 9 Si 0.95 48.62 29.54 68.60 2.03 50.65 16 10 H -0.27 -13.51 7.11 99.48 0.71 -12.80 16 11 H -0.28 -13.67 7.11 99.48 0.71 -12.97 16 12 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 13 N -0.53 -20.40 4.16 -871.37 -3.62 -24.02 16 14 C 0.05 1.63 5.14 86.33 0.44 2.07 16 15 C -0.11 -2.91 5.95 30.65 0.18 -2.73 16 16 C -0.13 -3.13 4.23 30.64 0.13 -3.00 16 17 C 0.12 3.76 0.70 -10.75 -0.01 3.75 16 18 C -0.15 -3.71 5.08 30.72 0.16 -3.56 16 19 C -0.07 -1.36 5.21 29.90 0.16 -1.21 16 20 C -0.18 -4.62 5.17 -19.74 -0.10 -4.72 16 21 C -0.09 -1.81 9.66 22.30 0.22 -1.59 16 22 C -0.16 -3.41 10.04 22.25 0.22 -3.19 16 23 C -0.09 -2.37 10.04 22.22 0.22 -2.15 16 24 C -0.18 -6.27 9.94 22.42 0.22 -6.05 16 25 C 0.12 4.00 6.00 22.52 0.14 4.14 16 26 O -0.31 -12.44 9.10 -92.18 -0.84 -13.28 16 27 C 0.08 2.79 3.51 86.27 0.30 3.09 16 28 H 0.05 1.70 6.45 -2.39 -0.02 1.68 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.07 1.87 6.84 -2.39 -0.02 1.86 16 31 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 32 H 0.00 -0.21 6.35 -2.38 -0.02 -0.23 16 33 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 34 H 0.07 2.00 8.01 -2.39 -0.02 1.98 16 35 H 0.05 1.18 6.90 -2.39 -0.02 1.16 16 36 H 0.04 1.44 7.84 -2.39 -0.02 1.42 16 37 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.07 1.72 5.96 -2.39 -0.01 1.71 16 39 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.10 1.57 7.05 -2.38 -0.02 1.55 16 43 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 45 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 46 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 47 H 0.10 3.91 8.06 -2.91 -0.02 3.89 16 48 H 0.07 2.02 6.56 -2.39 -0.02 2.01 16 49 H 0.05 2.20 6.21 -2.39 -0.01 2.18 16 Total: -1.00 -74.09 368.80 2.57 -71.52 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.92 Total: 17.17 kcal Atomic # 6 Polarization: -46.14 SS G_CDS: 3.81 Total: -42.33 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -3.34 Total: -83.73 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.84 Total: -13.28 kcal Atomic # 14 Polarization: 48.62 SS G_CDS: 2.03 Total: 50.65 kcal Total: -74.09 2.57 -71.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528729799.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.527 kcal (2) G-P(sol) polarization free energy of solvation -74.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds