Wall clock time and date at job start Tue Mar 31 2020 11:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.46762 * 2 1 4 4 C 1.53005 * 109.47166 * 240.00780 * 2 1 3 5 5 C 1.52997 * 109.47307 * 64.99534 * 4 2 1 6 6 C 1.50694 * 109.47159 * 180.02562 * 5 4 2 7 7 O 1.21284 * 120.00231 * 359.97438 * 6 5 4 8 8 N 1.34781 * 120.00225 * 180.02562 * 6 5 4 9 9 C 1.46920 * 120.63045 * 179.97438 * 8 6 5 10 10 C 1.53187 * 108.89681 * 233.51238 * 9 8 6 11 11 C 1.53071 * 109.29548 * 305.58486 * 10 9 8 12 12 C 1.50701 * 109.44475 * 181.23482 * 11 10 9 13 13 H 1.08003 * 119.99821 * 245.24446 * 12 11 10 14 14 C 1.37874 * 120.00204 * 65.23906 * 12 11 10 15 15 N 1.31518 * 119.99844 * 9.58930 * 14 12 11 16 16 Si 1.86798 * 120.00365 * 189.58428 * 14 12 11 17 17 H 1.48499 * 109.47164 * 94.99341 * 16 14 12 18 18 H 1.48496 * 109.47175 * 214.99616 * 16 14 12 19 19 H 1.48506 * 109.46750 * 334.99426 * 16 14 12 20 20 C 1.53040 * 109.66197 * 61.14927 * 11 10 9 21 21 C 1.46919 * 120.62706 * 359.97181 * 8 6 5 22 22 C 1.50696 * 109.47619 * 120.00191 * 2 1 3 23 23 C 1.38236 * 119.99570 * 59.72909 * 22 2 1 24 24 C 1.38243 * 119.99778 * 179.81040 * 23 22 2 25 25 C 1.38240 * 119.99750 * 0.39738 * 24 23 22 26 26 C 1.38238 * 120.00122 * 359.85633 * 25 24 23 27 27 C 1.38233 * 120.00104 * 240.00468 * 22 2 1 28 28 H 1.09010 * 109.47053 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47244 * 299.98872 * 1 2 3 30 30 H 1.08997 * 109.47943 * 59.99961 * 1 2 3 31 31 H 1.08998 * 109.46614 * 304.99135 * 4 2 1 32 32 H 1.09004 * 109.47012 * 184.99857 * 4 2 1 33 33 H 1.09003 * 109.46962 * 59.99919 * 5 4 2 34 34 H 1.08999 * 109.47074 * 299.99744 * 5 4 2 35 35 H 1.09000 * 109.59131 * 353.37499 * 9 8 6 36 36 H 1.09003 * 109.58706 * 113.65296 * 9 8 6 37 37 H 1.09006 * 109.49456 * 65.38882 * 10 9 8 38 38 H 1.09000 * 109.50264 * 185.48906 * 10 9 8 39 39 H 1.09004 * 109.34754 * 301.12351 * 11 10 9 40 40 H 0.96997 * 119.99642 * 179.97438 * 15 14 12 41 41 H 1.09002 * 109.49926 * 178.75439 * 20 11 10 42 42 H 1.08999 * 109.52727 * 58.66713 * 20 11 10 43 43 H 1.08994 * 109.58851 * 246.19849 * 21 8 6 44 44 H 1.08999 * 109.58987 * 6.49198 * 21 8 6 45 45 H 1.07992 * 120.00621 * 0.02562 * 23 22 2 46 46 H 1.07995 * 120.00154 * 180.22808 * 24 23 22 47 47 H 1.07996 * 119.99748 * 179.82979 * 25 24 23 48 48 H 1.07992 * 119.99846 * 179.97438 * 26 25 24 49 49 H 1.07999 * 120.00445 * 359.97392 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.6351 0.0691 -2.4953 6 6 2.1369 -0.6414 -3.7259 7 8 2.7577 -1.6777 -3.6170 8 7 1.8968 -0.1249 -4.9474 9 6 2.3801 -0.8058 -6.1563 10 6 3.1928 0.1868 -6.9934 11 6 2.3448 1.4317 -7.2661 12 6 3.1304 2.3977 -8.1151 13 1 3.4196 3.3577 -7.7137 14 6 3.4799 2.0558 -9.4043 15 7 2.9732 0.9762 -9.9587 16 14 4.6732 3.1260 -10.3635 17 1 6.0480 2.5822 -10.2241 18 1 4.2874 3.1349 -11.7974 19 1 4.6328 4.5119 -9.8314 20 6 1.9739 2.1023 -5.9414 21 6 1.1468 1.1297 -5.0953 22 6 2.0324 -0.7104 1.2304 23 6 1.6938 -2.0322 1.4519 24 6 2.1579 -2.6852 2.5785 25 6 2.9538 -2.0137 3.4878 26 6 3.2880 -0.6903 3.2689 27 6 2.8271 -0.0386 2.1403 28 1 -0.3634 -1.0278 -0.0005 29 1 -0.3634 0.5137 0.8901 30 1 -0.3635 0.5138 -0.8899 31 1 1.6054 -1.7197 -1.2953 32 1 3.1263 -0.7993 -1.2057 33 1 2.0697 1.0677 -2.4493 34 1 0.5488 0.1472 -2.5390 35 1 3.0114 -1.6482 -5.8736 36 1 1.5308 -1.1648 -6.7377 37 1 4.0913 0.4735 -6.4469 38 1 3.4740 -0.2786 -7.9381 39 1 1.4359 1.1412 -7.7930 40 1 3.2188 0.7360 -10.8657 41 1 1.3890 3.0005 -6.1395 42 1 2.8823 2.3712 -5.4023 43 1 0.1968 0.9312 -5.5914 44 1 0.9623 1.5632 -4.1124 45 1 1.0697 -2.5559 0.7431 46 1 1.8965 -3.7189 2.7498 47 1 3.3141 -2.5230 4.3694 48 1 3.9094 -0.1657 3.9795 49 1 3.0882 0.9953 1.9693 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541051600.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:49 Heat of formation + Delta-G solvation = -42.285198 kcal Electronic energy + Delta-G solvation = -25860.259138 eV Core-core repulsion = 22364.650368 eV Total energy + Delta-G solvation = -3495.608771 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.98038 -39.45442 -36.98577 -35.91035 -33.51802 -31.72908 -31.10016 -31.00079 -30.17302 -28.91261 -26.38482 -25.22646 -23.31771 -22.90775 -22.57636 -21.86664 -20.12858 -19.61771 -18.27497 -17.17992 -16.79395 -16.21593 -15.77378 -15.51746 -15.16981 -15.01791 -14.54151 -14.10144 -13.96620 -13.65309 -13.52237 -13.30708 -13.19624 -12.90773 -12.74765 -12.50474 -12.42822 -12.21148 -11.96498 -11.69967 -11.65782 -11.35577 -11.28324 -11.00760 -10.92022 -10.78602 -10.67934 -10.58147 -10.43751 -10.17467 -9.62741 -9.46462 -9.10042 -9.07129 -8.99466 -8.85530 -8.35910 -8.01088 -6.06261 -4.08142 1.17922 1.22002 3.00843 3.28199 3.36035 3.38192 3.46297 3.62280 4.41029 4.42782 4.55381 4.75701 4.80821 4.89858 4.95122 5.06054 5.19721 5.23879 5.26049 5.28632 5.33723 5.37984 5.43560 5.59300 5.72216 5.75122 5.76559 5.84973 5.87507 5.89608 5.92453 6.05600 6.12600 6.22480 6.26244 6.31054 6.33292 6.37849 6.43080 6.50260 6.58525 6.80915 6.82674 6.94383 7.14089 7.26965 7.66385 7.86187 7.93044 7.96899 8.37982 8.58950 8.95420 9.55717 11.02483 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.027856 B = 0.002257 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.931997 B =12401.937561 C =12499.168859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.055 4.055 3 H 0.079 0.921 4 C -0.093 4.093 5 C -0.140 4.140 6 C 0.508 3.492 7 O -0.557 6.557 8 N -0.602 5.602 9 C 0.109 3.891 10 C -0.116 4.116 11 C 0.047 3.953 12 C -0.516 4.516 13 H 0.055 0.945 14 C 0.064 3.936 15 N -0.888 5.888 16 Si 0.887 3.113 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.124 4.124 21 C 0.106 3.894 22 C -0.070 4.070 23 C -0.112 4.112 24 C -0.120 4.120 25 C -0.129 4.129 26 C -0.120 4.120 27 C -0.119 4.119 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.040 0.960 38 H 0.084 0.916 39 H 0.034 0.966 40 H 0.260 0.740 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.371 -2.746 23.284 24.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.074 4.074 3 H 0.098 0.902 4 C -0.131 4.131 5 C -0.180 4.180 6 C 0.296 3.704 7 O -0.436 6.436 8 N -0.334 5.334 9 C -0.013 4.013 10 C -0.155 4.155 11 C 0.028 3.972 12 C -0.554 4.554 13 H 0.073 0.927 14 C -0.138 4.138 15 N -0.526 5.526 16 Si 0.715 3.285 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.162 4.162 21 C -0.017 4.017 22 C -0.070 4.070 23 C -0.130 4.130 24 C -0.138 4.138 25 C -0.147 4.147 26 C -0.138 4.138 27 C -0.137 4.137 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.102 0.898 39 H 0.052 0.948 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.053 -3.390 23.147 23.933 hybrid contribution 0.729 0.627 -0.703 1.191 sum -4.325 -2.762 22.444 23.023 Atomic orbital electron populations 1.21911 0.94246 1.02251 1.01919 1.20233 0.96056 0.99179 0.91888 0.90246 1.21380 1.01997 0.98860 0.90850 1.21744 1.02620 1.00610 0.93042 1.20603 0.79822 0.85273 0.84661 1.90648 1.41870 1.24542 1.86563 1.48240 1.54555 1.24455 1.06169 1.21817 0.98601 0.96279 0.84610 1.21936 0.97744 0.97094 0.98703 1.18651 0.95991 0.92343 0.90192 1.21148 1.34873 1.01915 0.97509 0.92713 1.24963 0.96065 0.95387 0.97394 1.69954 1.42512 1.25734 1.14374 0.86666 0.81758 0.80892 0.79215 1.20719 1.21316 1.19926 1.22002 0.98586 0.97294 0.98333 1.21865 0.95081 0.84518 1.00230 1.19888 0.97076 0.94284 0.95787 1.21046 1.00143 0.94379 0.97473 1.21153 0.98095 0.99806 0.94700 1.21126 0.99055 0.94949 0.99533 1.21128 1.00061 0.95001 0.97651 1.21097 0.98152 0.99945 0.94462 0.92400 0.92647 0.91878 0.91076 0.91073 0.89028 0.89010 0.90664 0.92314 0.94129 0.89768 0.94787 0.92977 0.91939 0.92961 0.91854 0.91122 0.86033 0.86230 0.86382 0.86266 0.86134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.76 37.15 0.33 -0.84 16 2 C -0.06 -0.50 2.56 -91.77 -0.24 -0.74 16 3 H 0.08 0.67 7.88 -51.93 -0.41 0.26 16 4 C -0.09 -1.06 3.71 -26.73 -0.10 -1.16 16 5 C -0.14 -1.66 3.80 -27.89 -0.11 -1.77 16 6 C 0.51 8.55 7.70 -10.99 -0.08 8.46 16 7 O -0.56 -11.26 15.40 5.55 0.09 -11.18 16 8 N -0.60 -10.56 2.97 -172.80 -0.51 -11.07 16 9 C 0.11 2.16 6.43 -3.72 -0.02 2.13 16 10 C -0.12 -2.65 5.21 -26.60 -0.14 -2.79 16 11 C 0.05 1.10 1.92 -91.71 -0.18 0.92 16 12 C -0.52 -13.68 8.48 -34.44 -0.29 -13.97 16 13 H 0.05 1.44 7.77 -52.48 -0.41 1.03 16 14 C 0.06 1.73 5.19 -17.82 -0.09 1.63 16 15 N -0.89 -24.88 12.15 55.43 0.67 -24.21 16 16 Si 0.89 20.94 29.55 -169.99 -5.02 15.92 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 C -0.12 -2.34 5.31 -26.62 -0.14 -2.48 16 21 C 0.11 1.64 6.34 -3.73 -0.02 1.61 16 22 C -0.07 -0.69 4.78 -104.63 -0.50 -1.19 16 23 C -0.11 -1.10 8.76 -39.58 -0.35 -1.44 16 24 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 25 C -0.13 -1.10 10.05 -39.58 -0.40 -1.50 16 26 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 27 C -0.12 -1.10 9.67 -39.58 -0.38 -1.49 16 28 H 0.06 0.46 7.38 -51.92 -0.38 0.08 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.46 6.57 -51.93 -0.34 0.12 16 31 H 0.07 0.87 7.54 -51.93 -0.39 0.48 16 32 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 33 H 0.09 0.98 7.69 -51.93 -0.40 0.58 16 34 H 0.09 0.91 6.36 -51.93 -0.33 0.58 16 35 H 0.07 1.53 7.01 -51.93 -0.36 1.17 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.08 2.13 6.87 -51.93 -0.36 1.77 16 39 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 40 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.07 0.85 5.93 -51.93 -0.31 0.54 16 45 H 0.12 1.10 7.16 -52.49 -0.38 0.72 16 46 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 47 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 48 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 49 H 0.12 0.94 7.95 -52.49 -0.42 0.52 16 LS Contribution 383.79 15.07 5.78 5.78 Total: -1.00 -30.41 383.79 -10.77 -41.18 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -8.26 Total: 1.09 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -3.51 Total: -17.52 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.16 Total: -35.28 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.41 -10.77 -41.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541051600.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.105 kcal (2) G-P(sol) polarization free energy of solvation -30.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds