Wall clock time and date at job start Tue Mar 31 2020 11:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.46762 * 2 1 4 4 C 1.53005 * 109.47166 * 240.00780 * 2 1 3 5 5 C 1.52997 * 109.47307 * 64.99534 * 4 2 1 6 6 C 1.50694 * 109.47159 * 180.02562 * 5 4 2 7 7 O 1.21284 * 120.00231 * 359.97438 * 6 5 4 8 8 N 1.34781 * 120.00225 * 180.02562 * 6 5 4 9 9 C 1.46920 * 120.63045 * 179.97438 * 8 6 5 10 10 C 1.53187 * 108.89681 * 233.51238 * 9 8 6 11 11 C 1.53071 * 109.29548 * 305.58486 * 10 9 8 12 12 C 1.50701 * 109.44475 * 181.23482 * 11 10 9 13 13 H 1.08003 * 119.99821 * 245.24446 * 12 11 10 14 14 C 1.37874 * 120.00204 * 65.23906 * 12 11 10 15 15 N 1.31518 * 119.99844 * 9.58930 * 14 12 11 16 16 Si 1.86798 * 120.00365 * 189.58428 * 14 12 11 17 17 H 1.48499 * 109.47164 * 94.99341 * 16 14 12 18 18 H 1.48496 * 109.47175 * 214.99616 * 16 14 12 19 19 H 1.48506 * 109.46750 * 334.99426 * 16 14 12 20 20 C 1.53040 * 109.66197 * 61.14927 * 11 10 9 21 21 C 1.46919 * 120.62706 * 359.97181 * 8 6 5 22 22 C 1.50696 * 109.47619 * 120.00191 * 2 1 3 23 23 C 1.38236 * 119.99570 * 59.72909 * 22 2 1 24 24 C 1.38243 * 119.99778 * 179.81040 * 23 22 2 25 25 C 1.38240 * 119.99750 * 0.39738 * 24 23 22 26 26 C 1.38238 * 120.00122 * 359.85633 * 25 24 23 27 27 C 1.38233 * 120.00104 * 240.00468 * 22 2 1 28 28 H 1.09010 * 109.47053 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47244 * 299.98872 * 1 2 3 30 30 H 1.08997 * 109.47943 * 59.99961 * 1 2 3 31 31 H 1.08998 * 109.46614 * 304.99135 * 4 2 1 32 32 H 1.09004 * 109.47012 * 184.99857 * 4 2 1 33 33 H 1.09003 * 109.46962 * 59.99919 * 5 4 2 34 34 H 1.08999 * 109.47074 * 299.99744 * 5 4 2 35 35 H 1.09000 * 109.59131 * 353.37499 * 9 8 6 36 36 H 1.09003 * 109.58706 * 113.65296 * 9 8 6 37 37 H 1.09006 * 109.49456 * 65.38882 * 10 9 8 38 38 H 1.09000 * 109.50264 * 185.48906 * 10 9 8 39 39 H 1.09004 * 109.34754 * 301.12351 * 11 10 9 40 40 H 0.96997 * 119.99642 * 179.97438 * 15 14 12 41 41 H 1.09002 * 109.49926 * 178.75439 * 20 11 10 42 42 H 1.08999 * 109.52727 * 58.66713 * 20 11 10 43 43 H 1.08994 * 109.58851 * 246.19849 * 21 8 6 44 44 H 1.08999 * 109.58987 * 6.49198 * 21 8 6 45 45 H 1.07992 * 120.00621 * 0.02562 * 23 22 2 46 46 H 1.07995 * 120.00154 * 180.22808 * 24 23 22 47 47 H 1.07996 * 119.99748 * 179.82979 * 25 24 23 48 48 H 1.07992 * 119.99846 * 179.97438 * 26 25 24 49 49 H 1.07999 * 120.00445 * 359.97392 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.6351 0.0691 -2.4953 6 6 2.1369 -0.6414 -3.7259 7 8 2.7577 -1.6777 -3.6170 8 7 1.8968 -0.1249 -4.9474 9 6 2.3801 -0.8058 -6.1563 10 6 3.1928 0.1868 -6.9934 11 6 2.3448 1.4317 -7.2661 12 6 3.1304 2.3977 -8.1151 13 1 3.4196 3.3577 -7.7137 14 6 3.4799 2.0558 -9.4043 15 7 2.9732 0.9762 -9.9587 16 14 4.6732 3.1260 -10.3635 17 1 6.0480 2.5822 -10.2241 18 1 4.2874 3.1349 -11.7974 19 1 4.6328 4.5119 -9.8314 20 6 1.9739 2.1023 -5.9414 21 6 1.1468 1.1297 -5.0953 22 6 2.0324 -0.7104 1.2304 23 6 1.6938 -2.0322 1.4519 24 6 2.1579 -2.6852 2.5785 25 6 2.9538 -2.0137 3.4878 26 6 3.2880 -0.6903 3.2689 27 6 2.8271 -0.0386 2.1403 28 1 -0.3634 -1.0278 -0.0005 29 1 -0.3634 0.5137 0.8901 30 1 -0.3635 0.5138 -0.8899 31 1 1.6054 -1.7197 -1.2953 32 1 3.1263 -0.7993 -1.2057 33 1 2.0697 1.0677 -2.4493 34 1 0.5488 0.1472 -2.5390 35 1 3.0114 -1.6482 -5.8736 36 1 1.5308 -1.1648 -6.7377 37 1 4.0913 0.4735 -6.4469 38 1 3.4740 -0.2786 -7.9381 39 1 1.4359 1.1412 -7.7930 40 1 3.2188 0.7360 -10.8657 41 1 1.3890 3.0005 -6.1395 42 1 2.8823 2.3712 -5.4023 43 1 0.1968 0.9312 -5.5914 44 1 0.9623 1.5632 -4.1124 45 1 1.0697 -2.5559 0.7431 46 1 1.8965 -3.7189 2.7498 47 1 3.3141 -2.5230 4.3694 48 1 3.9094 -0.1657 3.9795 49 1 3.0882 0.9953 1.9693 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541051600.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:47 Heat of formation + Delta-G solvation = -56.237932 kcal Electronic energy + Delta-G solvation = -25860.864174 eV Core-core repulsion = 22364.650368 eV Total energy + Delta-G solvation = -3496.213807 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.18782 -40.30027 -38.47740 -36.76857 -35.32388 -33.12716 -32.49053 -31.74835 -31.49123 -29.68357 -28.05369 -26.27872 -24.68181 -24.08585 -23.57733 -23.00352 -21.42355 -20.62320 -19.68850 -18.56682 -18.04824 -17.58716 -16.78649 -16.72951 -16.47538 -16.12880 -15.81161 -15.10797 -14.97688 -14.90051 -14.58512 -14.51066 -14.33868 -14.19048 -14.03360 -13.84277 -13.41733 -13.34379 -13.18589 -13.04957 -12.80175 -12.63685 -12.47739 -12.42327 -12.19548 -12.06436 -11.98897 -11.78601 -11.48581 -11.43835 -11.34344 -11.03827 -10.88133 -10.62446 -10.42069 -9.76652 -9.53558 -9.52043 -8.12973 -6.20932 0.51114 0.55275 1.39329 1.42232 1.50715 1.70117 2.14083 2.43039 2.93463 3.17338 3.58862 3.71917 3.90862 4.10375 4.17347 4.19661 4.25163 4.30175 4.34291 4.36920 4.40019 4.51919 4.56098 4.59238 4.63247 4.65578 4.70330 4.74380 4.77852 4.92891 4.98126 5.05849 5.08888 5.12000 5.17684 5.23241 5.24467 5.26395 5.39026 5.41165 5.45959 5.54338 5.64764 5.67773 5.68466 5.81927 5.96976 6.01432 6.18701 6.36962 6.58936 6.91619 7.24894 7.46020 8.94764 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.027856 B = 0.002257 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.931997 B =12401.937561 C =12499.168859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.046 4.046 3 H 0.092 0.908 4 C -0.086 4.086 5 C -0.131 4.131 6 C 0.503 3.497 7 O -0.597 6.597 8 N -0.606 5.606 9 C 0.119 3.881 10 C -0.104 4.104 11 C 0.043 3.957 12 C -0.532 4.532 13 H 0.054 0.946 14 C 0.014 3.986 15 N -0.917 5.917 16 Si 0.946 3.054 17 H -0.281 1.281 18 H -0.285 1.285 19 H -0.265 1.265 20 C -0.118 4.118 21 C 0.110 3.890 22 C -0.085 4.085 23 C -0.129 4.129 24 C -0.132 4.132 25 C -0.137 4.137 26 C -0.128 4.128 27 C -0.131 4.131 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.027 0.973 38 H 0.050 0.950 39 H 0.006 0.994 40 H 0.260 0.740 41 H 0.074 0.926 42 H 0.049 0.951 43 H 0.073 0.927 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.133 0.867 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.166 -1.073 25.409 26.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.065 4.065 3 H 0.111 0.889 4 C -0.124 4.124 5 C -0.170 4.170 6 C 0.294 3.706 7 O -0.479 6.479 8 N -0.338 5.338 9 C -0.004 4.004 10 C -0.143 4.143 11 C 0.024 3.976 12 C -0.570 4.570 13 H 0.072 0.928 14 C -0.185 4.185 15 N -0.556 5.556 16 Si 0.772 3.228 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.190 1.190 20 C -0.156 4.156 21 C -0.012 4.012 22 C -0.085 4.085 23 C -0.147 4.147 24 C -0.149 4.149 25 C -0.155 4.155 26 C -0.146 4.146 27 C -0.149 4.149 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.133 0.867 34 H 0.141 0.859 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.046 0.954 38 H 0.068 0.932 39 H 0.024 0.976 40 H 0.069 0.931 41 H 0.093 0.907 42 H 0.068 0.932 43 H 0.091 0.909 44 H 0.137 0.863 45 H 0.140 0.860 46 H 0.151 0.849 47 H 0.155 0.845 48 H 0.156 0.844 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.863 -1.691 25.289 26.015 hybrid contribution 1.008 0.067 -1.347 1.684 sum -4.855 -1.624 23.942 24.483 Atomic orbital electron populations 1.21908 0.93142 1.02302 1.02817 1.20170 0.96862 0.99246 0.90201 0.88949 1.21280 1.00404 0.98658 0.92052 1.21813 1.04407 1.00750 0.90002 1.21541 0.78755 0.84869 0.85477 1.90634 1.43610 1.26584 1.87099 1.48320 1.54773 1.25131 1.05592 1.21455 0.98040 0.95307 0.85574 1.21704 0.97652 0.97545 0.97437 1.18632 0.94351 0.92298 0.92318 1.21572 1.34951 1.02393 0.98073 0.92795 1.25708 0.97541 0.96639 0.98613 1.70069 1.43712 1.27244 1.14594 0.85732 0.79508 0.79675 0.77897 1.20744 1.21113 1.18962 1.21873 0.99337 0.98218 0.96138 1.21997 0.94150 0.82718 1.02296 1.20061 0.97553 0.94481 0.96367 1.21205 1.00725 0.94803 0.97987 1.21422 0.98195 1.00651 0.94676 1.21436 0.98736 0.95197 1.00081 1.21445 1.00047 0.95244 0.97896 1.21359 0.98089 1.00766 0.94656 0.92843 0.92079 0.90599 0.92451 0.93503 0.86712 0.85910 0.91685 0.92286 0.95378 0.93154 0.97566 0.93120 0.90750 0.93212 0.90874 0.86274 0.86047 0.84904 0.84489 0.84375 0.84791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.76 71.98 0.63 -1.24 16 2 C -0.05 -0.73 2.56 -11.54 -0.03 -0.76 16 3 H 0.09 1.23 7.88 -2.39 -0.02 1.21 16 4 C -0.09 -1.82 3.71 30.59 0.11 -1.71 16 5 C -0.13 -2.66 3.80 29.84 0.11 -2.54 16 6 C 0.50 16.11 7.70 87.65 0.67 16.79 16 7 O -0.60 -24.20 15.40 -3.04 -0.05 -24.25 16 8 N -0.61 -20.36 2.97 -819.00 -2.44 -22.79 16 9 C 0.12 4.81 6.43 86.36 0.55 5.37 16 10 C -0.10 -4.91 5.21 30.68 0.16 -4.75 16 11 C 0.04 2.02 1.92 -11.50 -0.02 2.00 16 12 C -0.53 -28.40 8.48 25.60 0.22 -28.18 16 13 H 0.05 2.82 7.77 -2.91 -0.02 2.80 16 14 C 0.01 0.76 5.19 84.65 0.44 1.20 16 15 N -0.92 -52.74 12.15 21.45 0.26 -52.48 16 16 Si 0.95 43.28 29.55 68.60 2.03 45.30 16 17 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 18 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 20 C -0.12 -4.21 5.31 30.66 0.16 -4.05 16 21 C 0.11 3.05 6.34 86.36 0.55 3.60 16 22 C -0.08 -1.55 4.78 -19.87 -0.09 -1.64 16 23 C -0.13 -2.44 8.76 22.27 0.20 -2.24 16 24 C -0.13 -2.26 10.05 22.27 0.22 -2.03 16 25 C -0.14 -2.15 10.05 22.27 0.22 -1.92 16 26 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 27 C -0.13 -2.21 9.67 22.27 0.22 -2.00 16 28 H 0.05 0.74 7.38 -2.38 -0.02 0.72 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.08 0.78 6.57 -2.39 -0.02 0.77 16 31 H 0.06 1.37 7.54 -2.39 -0.02 1.35 16 32 H 0.05 1.22 8.10 -2.38 -0.02 1.20 16 33 H 0.11 1.90 7.69 -2.39 -0.02 1.88 16 34 H 0.12 1.81 6.36 -2.39 -0.02 1.79 16 35 H 0.06 2.74 7.01 -2.39 -0.02 2.72 16 36 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.05 2.67 6.87 -2.39 -0.02 2.66 16 39 H 0.01 0.32 8.09 -2.39 -0.02 0.31 16 40 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 41 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.12 2.20 5.93 -2.39 -0.01 2.19 16 45 H 0.12 2.17 7.16 -2.91 -0.02 2.15 16 46 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 47 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 48 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 49 H 0.13 1.79 7.95 -2.91 -0.02 1.77 16 Total: -1.00 -68.23 383.79 5.26 -62.97 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.91 Total: 17.16 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: 4.55 Total: -25.91 kcal Atomic # 7 Polarization: -73.10 SS G_CDS: -2.18 Total: -75.28 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.05 Total: -24.25 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -68.23 5.26 -62.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541051600.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.735 kcal (2) G-P(sol) polarization free energy of solvation -68.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds