Wall clock time and date at job start Tue Mar 31 2020 11:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.47088 * 2 1 4 4 C 1.52997 * 109.46844 * 240.00278 * 2 1 3 5 5 C 1.50700 * 109.47207 * 64.99919 * 4 2 1 6 6 O 1.21282 * 120.00324 * 359.97438 * 5 4 2 7 7 N 1.34778 * 120.00367 * 179.97438 * 5 4 2 8 8 C 1.39126 * 120.00618 * 173.98841 * 7 5 4 9 9 C 1.38644 * 120.28211 * 335.27811 * 8 7 5 10 10 C 1.38217 * 120.03426 * 179.97438 * 9 8 7 11 11 C 1.38864 * 120.61554 * 359.97335 * 10 9 8 12 12 C 1.36461 * 120.58016 * 0.02562 * 11 10 9 13 13 C 1.40743 * 119.93949 * 359.76532 * 12 11 10 14 14 C 1.41072 * 120.29958 * 180.23164 * 13 12 11 15 15 H 1.07998 * 119.99351 * 154.54433 * 14 13 12 16 16 C 1.39951 * 120.00156 * 334.54842 * 14 13 12 17 17 N 1.30853 * 120.00333 * 354.26764 * 16 14 13 18 18 Si 1.86803 * 119.99987 * 174.27612 * 16 14 13 19 19 H 1.48495 * 109.47047 * 59.99445 * 18 16 14 20 20 H 1.48495 * 109.47347 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.46652 * 299.99507 * 18 16 14 22 22 C 1.52993 * 109.47330 * 120.00313 * 2 1 3 23 23 C 1.52997 * 109.47129 * 299.99791 * 22 2 1 24 24 C 1.53005 * 109.47377 * 179.97438 * 23 22 2 25 25 C 1.52997 * 109.46981 * 60.00015 * 24 23 22 26 26 C 1.53007 * 109.47082 * 300.00182 * 25 24 23 27 27 C 1.52997 * 109.47118 * 179.97438 * 22 2 1 28 28 H 1.09000 * 109.47016 * 59.99493 * 1 2 3 29 29 H 1.08999 * 109.47088 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46863 * 299.99707 * 1 2 3 31 31 H 1.09001 * 109.47521 * 305.00229 * 4 2 1 32 32 H 1.08995 * 109.47164 * 184.99511 * 4 2 1 33 33 H 0.97001 * 119.99801 * 354.26680 * 7 5 4 34 34 H 1.08007 * 119.98317 * 359.96677 * 9 8 7 35 35 H 1.08001 * 119.69195 * 179.97438 * 10 9 8 36 36 H 1.08009 * 119.71365 * 179.97438 * 11 10 9 37 37 H 1.07994 * 120.03488 * 179.97438 * 12 11 10 38 38 H 0.96999 * 120.00068 * 179.97438 * 17 16 14 39 39 H 1.08999 * 109.47290 * 59.99811 * 22 2 1 40 40 H 1.09002 * 109.47551 * 300.00205 * 23 22 2 41 41 H 1.09003 * 109.47423 * 60.00194 * 23 22 2 42 42 H 1.09002 * 109.46961 * 300.00582 * 24 23 22 43 43 H 1.08996 * 109.47380 * 180.02562 * 24 23 22 44 44 H 1.09000 * 109.47240 * 180.02562 * 25 24 23 45 45 H 1.08999 * 109.47091 * 60.00035 * 25 24 23 46 46 H 1.08999 * 109.47038 * 299.99886 * 26 25 24 47 47 H 1.08999 * 109.46971 * 179.97438 * 26 25 24 48 48 H 1.08996 * 109.47072 * 299.99978 * 27 22 2 49 49 H 1.08999 * 109.47091 * 59.99815 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 8 1.0109 1.0871 -2.3633 7 7 1.9852 -0.3912 -3.7002 8 6 1.5124 0.2569 -4.8369 9 6 0.3392 0.9938 -4.7844 10 6 -0.1256 1.6360 -5.9167 11 6 0.5726 1.5522 -7.1141 12 6 1.7300 0.8338 -7.1941 13 6 2.2274 0.1740 -6.0547 14 6 3.4257 -0.5667 -6.1276 15 1 4.0200 -0.7209 -5.2391 16 6 3.8444 -1.1017 -7.3512 17 7 3.0715 -1.0120 -8.4032 18 14 5.5066 -1.9440 -7.4825 19 1 5.5505 -3.1001 -6.5515 20 1 5.7112 -2.4213 -8.8737 21 1 6.5791 -0.9806 -7.1264 22 6 2.0401 -0.7213 1.2491 23 6 1.5302 -0.0001 2.4984 24 6 2.0397 -0.7217 3.7477 25 6 3.5697 -0.7223 3.7479 26 6 4.0796 -1.4435 2.4986 27 6 3.5701 -0.7218 1.2488 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6054 -1.7197 -1.2953 32 1 3.1263 -0.7994 -1.2057 33 1 2.5592 -1.1681 -3.7884 34 1 -0.2119 1.0660 -3.8583 35 1 -1.0404 2.2082 -5.8696 36 1 0.1958 2.0595 -7.9901 37 1 2.2657 0.7743 -8.1299 38 1 3.3619 -1.3825 -9.2514 39 1 1.6768 -1.7489 1.2491 40 1 1.8935 1.0276 2.4985 41 1 0.4402 -0.0001 2.4985 42 1 1.6761 -1.7493 3.7474 43 1 1.6761 -0.2082 4.6376 44 1 3.9327 -1.2368 4.6376 45 1 3.9334 0.3052 3.7481 46 1 3.7159 -2.4711 2.4983 47 1 5.1696 -1.4435 2.4985 48 1 3.9330 -1.2358 0.3588 49 1 3.9338 0.3057 1.2485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564160965.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:28 Heat of formation + Delta-G solvation = -55.497042 kcal Electronic energy + Delta-G solvation = -26382.734485 eV Core-core repulsion = 22886.552805 eV Total energy + Delta-G solvation = -3496.181679 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.95138 -38.88164 -37.20083 -34.73024 -33.68551 -33.64828 -31.05684 -29.84213 -29.54270 -28.62487 -27.12984 -25.20010 -23.48940 -22.54148 -21.65082 -20.80878 -20.01744 -19.69479 -19.16147 -17.40997 -16.73661 -16.21787 -15.44055 -15.21683 -15.09333 -14.50281 -14.30881 -14.15778 -13.90774 -13.74677 -13.34279 -13.08167 -12.99308 -12.68646 -12.49373 -12.32452 -12.13667 -11.78066 -11.65949 -11.46440 -11.30400 -11.23996 -11.16273 -11.14132 -11.09697 -10.85781 -10.65272 -10.48553 -10.42987 -10.08877 -10.01881 -9.90968 -9.68861 -9.31600 -9.20780 -8.66578 -7.34666 -6.92331 -6.60155 -4.40722 2.63509 2.89343 3.02130 3.03815 3.22187 3.54777 3.87257 3.96671 4.53735 4.56159 4.63524 4.65605 4.93885 5.01350 5.13670 5.23613 5.27242 5.36644 5.39501 5.46007 5.51960 5.57969 5.68920 5.71378 5.80398 5.81483 5.85114 5.91266 6.00750 6.02484 6.08719 6.09865 6.14546 6.29241 6.31931 6.38830 6.54977 6.55421 6.63642 6.67059 6.94018 7.08805 7.22536 7.34144 7.66286 7.78467 8.03862 8.13556 8.16045 8.47425 8.60738 8.85358 8.87850 9.09233 10.17323 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015036 B = 0.003234 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.763065 B = 8656.439504 C =10320.676780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.067 4.067 3 H 0.077 0.923 4 C -0.139 4.139 5 C 0.495 3.505 6 O -0.537 6.537 7 N -0.640 5.640 8 C 0.021 3.979 9 C -0.100 4.100 10 C -0.222 4.222 11 C -0.121 4.121 12 C -0.151 4.151 13 C 0.091 3.909 14 C -0.462 4.462 15 H 0.073 0.927 16 C 0.072 3.928 17 N -0.801 5.801 18 Si 0.913 3.087 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.081 4.081 23 C -0.115 4.115 24 C -0.119 4.119 25 C -0.120 4.120 26 C -0.119 4.119 27 C -0.120 4.120 28 H 0.077 0.923 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.403 0.597 34 H 0.116 0.884 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.137 0.863 38 H 0.280 0.720 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.066 0.934 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.394 -3.417 17.268 17.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.086 4.086 3 H 0.095 0.905 4 C -0.179 4.179 5 C 0.283 3.717 6 O -0.416 6.416 7 N -0.281 5.281 8 C -0.073 4.073 9 C -0.120 4.120 10 C -0.241 4.241 11 C -0.140 4.140 12 C -0.171 4.171 13 C 0.087 3.913 14 C -0.493 4.493 15 H 0.091 0.909 16 C -0.144 4.144 17 N -0.427 5.427 18 Si 0.737 3.263 19 H -0.191 1.191 20 H -0.203 1.203 21 H -0.190 1.190 22 C -0.100 4.100 23 C -0.153 4.153 24 C -0.157 4.157 25 C -0.157 4.157 26 C -0.157 4.157 27 C -0.157 4.157 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.238 0.762 34 H 0.133 0.867 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.154 0.846 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.084 0.916 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.951 -2.802 17.125 17.379 hybrid contribution 1.062 -0.867 -0.295 1.402 sum 2.013 -3.669 16.830 17.342 Atomic orbital electron populations 1.21996 0.94888 1.01181 1.02997 1.20869 0.96352 0.99670 0.91686 0.90471 1.21806 1.02771 1.00105 0.93193 1.20611 0.80747 0.85845 0.84546 1.90580 1.40494 1.24166 1.86350 1.43030 1.49434 1.31232 1.04443 1.17823 0.96138 1.05878 0.87432 1.20740 0.94755 0.98583 0.97923 1.20352 1.01952 1.08095 0.93746 1.20523 0.97073 1.00370 0.95988 1.21292 0.97112 0.98528 1.00156 1.17430 0.92128 0.91656 0.90046 1.19292 1.05675 1.29397 0.94900 0.90892 1.25872 0.98250 0.95039 0.95224 1.69753 1.35496 1.36112 1.01370 0.86294 0.81924 0.79896 0.78138 1.19076 1.20309 1.18987 1.21205 0.95028 0.99563 0.94179 1.21628 1.00558 0.99341 0.93739 1.21537 0.95605 1.00664 0.97859 1.21539 0.95843 1.00690 0.97659 1.21542 0.99993 0.99364 0.94765 1.21700 0.95422 1.00955 0.97654 0.90417 0.93660 0.93016 0.89393 0.89123 0.76206 0.86672 0.89359 0.89493 0.84602 0.90911 0.91320 0.92019 0.91630 0.92199 0.92370 0.92485 0.92120 0.92150 0.92266 0.91570 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.58 37.16 0.32 -1.66 16 2 C -0.07 -0.82 1.62 -90.62 -0.15 -0.97 16 3 H 0.08 1.09 7.96 -51.93 -0.41 0.67 16 4 C -0.14 -1.83 4.96 -27.88 -0.14 -1.97 16 5 C 0.49 9.11 7.34 -10.98 -0.08 9.03 16 6 O -0.54 -11.47 11.14 5.56 0.06 -11.41 16 7 N -0.64 -12.99 5.08 -9.48 -0.05 -13.03 16 8 C 0.02 0.52 6.46 -83.17 -0.54 -0.02 16 9 C -0.10 -2.44 8.71 -39.44 -0.34 -2.78 16 10 C -0.22 -5.28 10.04 -39.36 -0.40 -5.67 16 11 C -0.12 -2.92 9.96 -39.99 -0.40 -3.32 16 12 C -0.15 -3.94 8.66 -39.28 -0.34 -4.28 16 13 C 0.09 2.37 5.63 -106.65 -0.60 1.77 16 14 C -0.46 -11.56 8.42 -37.87 -0.32 -11.88 16 15 H 0.07 1.70 7.09 -52.49 -0.37 1.33 16 16 C 0.07 1.74 5.36 -17.33 -0.09 1.65 16 17 N -0.80 -20.02 10.38 55.55 0.58 -19.44 16 18 Si 0.91 17.93 29.56 -169.99 -5.03 12.91 16 19 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 20 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 22 C -0.08 -0.80 1.77 -90.63 -0.16 -0.96 16 23 C -0.12 -1.06 4.85 -26.73 -0.13 -1.19 16 24 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 25 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 26 C -0.12 -0.99 5.92 -26.70 -0.16 -1.14 16 27 C -0.12 -1.13 4.86 -26.70 -0.13 -1.26 16 28 H 0.08 1.24 5.95 -51.93 -0.31 0.93 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.59 6.43 -51.93 -0.33 0.26 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.09 1.06 6.17 -51.93 -0.32 0.74 16 33 H 0.40 7.36 7.55 -40.82 -0.31 7.06 16 34 H 0.12 2.76 5.80 -52.48 -0.30 2.46 16 35 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 36 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 37 H 0.14 3.63 5.75 -52.49 -0.30 3.33 16 38 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.60 6.43 -51.93 -0.33 0.27 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.07 0.62 6.32 -51.93 -0.33 0.29 16 49 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 371.92 15.07 5.60 5.60 Total: -1.00 -28.07 371.92 -10.75 -38.82 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -7.96 Total: 13.41 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: -3.97 Total: -26.86 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 0.53 Total: -32.47 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.06 Total: -11.41 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.07 -10.75 -38.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564160965.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.675 kcal (2) G-P(sol) polarization free energy of solvation -28.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds