Wall clock time and date at job start Tue Mar 31 2020 11:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.47088 * 2 1 4 4 C 1.52997 * 109.46844 * 240.00278 * 2 1 3 5 5 C 1.50700 * 109.47207 * 64.99919 * 4 2 1 6 6 O 1.21282 * 120.00324 * 359.97438 * 5 4 2 7 7 N 1.34778 * 120.00367 * 179.97438 * 5 4 2 8 8 C 1.39126 * 120.00618 * 173.98841 * 7 5 4 9 9 C 1.38644 * 120.28211 * 335.27811 * 8 7 5 10 10 C 1.38217 * 120.03426 * 179.97438 * 9 8 7 11 11 C 1.38864 * 120.61554 * 359.97335 * 10 9 8 12 12 C 1.36461 * 120.58016 * 0.02562 * 11 10 9 13 13 C 1.40743 * 119.93949 * 359.76532 * 12 11 10 14 14 C 1.41072 * 120.29958 * 180.23164 * 13 12 11 15 15 H 1.07998 * 119.99351 * 154.54433 * 14 13 12 16 16 C 1.39951 * 120.00156 * 334.54842 * 14 13 12 17 17 N 1.30853 * 120.00333 * 354.26764 * 16 14 13 18 18 Si 1.86803 * 119.99987 * 174.27612 * 16 14 13 19 19 H 1.48495 * 109.47047 * 59.99445 * 18 16 14 20 20 H 1.48495 * 109.47347 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.46652 * 299.99507 * 18 16 14 22 22 C 1.52993 * 109.47330 * 120.00313 * 2 1 3 23 23 C 1.52997 * 109.47129 * 299.99791 * 22 2 1 24 24 C 1.53005 * 109.47377 * 179.97438 * 23 22 2 25 25 C 1.52997 * 109.46981 * 60.00015 * 24 23 22 26 26 C 1.53007 * 109.47082 * 300.00182 * 25 24 23 27 27 C 1.52997 * 109.47118 * 179.97438 * 22 2 1 28 28 H 1.09000 * 109.47016 * 59.99493 * 1 2 3 29 29 H 1.08999 * 109.47088 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46863 * 299.99707 * 1 2 3 31 31 H 1.09001 * 109.47521 * 305.00229 * 4 2 1 32 32 H 1.08995 * 109.47164 * 184.99511 * 4 2 1 33 33 H 0.97001 * 119.99801 * 354.26680 * 7 5 4 34 34 H 1.08007 * 119.98317 * 359.96677 * 9 8 7 35 35 H 1.08001 * 119.69195 * 179.97438 * 10 9 8 36 36 H 1.08009 * 119.71365 * 179.97438 * 11 10 9 37 37 H 1.07994 * 120.03488 * 179.97438 * 12 11 10 38 38 H 0.96999 * 120.00068 * 179.97438 * 17 16 14 39 39 H 1.08999 * 109.47290 * 59.99811 * 22 2 1 40 40 H 1.09002 * 109.47551 * 300.00205 * 23 22 2 41 41 H 1.09003 * 109.47423 * 60.00194 * 23 22 2 42 42 H 1.09002 * 109.46961 * 300.00582 * 24 23 22 43 43 H 1.08996 * 109.47380 * 180.02562 * 24 23 22 44 44 H 1.09000 * 109.47240 * 180.02562 * 25 24 23 45 45 H 1.08999 * 109.47091 * 60.00035 * 25 24 23 46 46 H 1.08999 * 109.47038 * 299.99886 * 26 25 24 47 47 H 1.08999 * 109.46971 * 179.97438 * 26 25 24 48 48 H 1.08996 * 109.47072 * 299.99978 * 27 22 2 49 49 H 1.08999 * 109.47091 * 59.99815 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 8 1.0109 1.0871 -2.3633 7 7 1.9852 -0.3912 -3.7002 8 6 1.5124 0.2569 -4.8369 9 6 0.3392 0.9938 -4.7844 10 6 -0.1256 1.6360 -5.9167 11 6 0.5726 1.5522 -7.1141 12 6 1.7300 0.8338 -7.1941 13 6 2.2274 0.1740 -6.0547 14 6 3.4257 -0.5667 -6.1276 15 1 4.0200 -0.7209 -5.2391 16 6 3.8444 -1.1017 -7.3512 17 7 3.0715 -1.0120 -8.4032 18 14 5.5066 -1.9440 -7.4825 19 1 5.5505 -3.1001 -6.5515 20 1 5.7112 -2.4213 -8.8737 21 1 6.5791 -0.9806 -7.1264 22 6 2.0401 -0.7213 1.2491 23 6 1.5302 -0.0001 2.4984 24 6 2.0397 -0.7217 3.7477 25 6 3.5697 -0.7223 3.7479 26 6 4.0796 -1.4435 2.4986 27 6 3.5701 -0.7218 1.2488 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6054 -1.7197 -1.2953 32 1 3.1263 -0.7994 -1.2057 33 1 2.5592 -1.1681 -3.7884 34 1 -0.2119 1.0660 -3.8583 35 1 -1.0404 2.2082 -5.8696 36 1 0.1958 2.0595 -7.9901 37 1 2.2657 0.7743 -8.1299 38 1 3.3619 -1.3825 -9.2514 39 1 1.6768 -1.7489 1.2491 40 1 1.8935 1.0276 2.4985 41 1 0.4402 -0.0001 2.4985 42 1 1.6761 -1.7493 3.7474 43 1 1.6761 -0.2082 4.6376 44 1 3.9327 -1.2368 4.6376 45 1 3.9334 0.3052 3.7481 46 1 3.7159 -2.4711 2.4983 47 1 5.1696 -1.4435 2.4985 48 1 3.9330 -1.2358 0.3588 49 1 3.9338 0.3057 1.2485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564160965.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:27 Heat of formation + Delta-G solvation = -67.448904 kcal Electronic energy + Delta-G solvation = -26383.252756 eV Core-core repulsion = 22886.552805 eV Total energy + Delta-G solvation = -3496.699951 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.37388 -39.93075 -38.86254 -35.81205 -35.48590 -35.27879 -31.79452 -31.46395 -30.96355 -29.94215 -28.43643 -27.03142 -24.49056 -23.42121 -23.14331 -22.46432 -21.12591 -20.59260 -20.54548 -19.23926 -18.30482 -17.74796 -16.89989 -16.48354 -16.28180 -16.00075 -15.53861 -15.10490 -14.94457 -14.76317 -14.69304 -14.41493 -14.38014 -14.09799 -13.92748 -13.58118 -13.25735 -13.14296 -13.07702 -12.81080 -12.71721 -12.61554 -12.29690 -12.12428 -12.02924 -11.97560 -11.90140 -11.84203 -11.53819 -11.51614 -11.23571 -11.09524 -10.97306 -10.79941 -10.66523 -10.29383 -9.28808 -8.76309 -8.42326 -6.31334 0.86192 1.08992 1.42483 1.53461 1.56394 1.94430 2.22565 2.51213 2.81170 3.72106 3.75578 3.77055 3.86303 4.01546 4.11455 4.24599 4.43127 4.49507 4.50264 4.55951 4.59726 4.66188 4.71690 4.72297 4.74934 4.79119 4.81385 4.86483 4.97622 5.05696 5.09638 5.12143 5.23036 5.26861 5.29339 5.33724 5.36226 5.37926 5.40637 5.47701 5.48500 5.54656 5.63768 5.71276 5.80171 5.90774 6.17971 6.24196 6.27218 6.69474 6.78353 6.99956 7.05487 7.49326 8.38432 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015036 B = 0.003234 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.763065 B = 8656.439504 C =10320.676780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.062 4.062 3 H 0.055 0.945 4 C -0.128 4.128 5 C 0.492 3.508 6 O -0.568 6.568 7 N -0.642 5.642 8 C 0.018 3.982 9 C -0.115 4.115 10 C -0.228 4.228 11 C -0.127 4.127 12 C -0.178 4.178 13 C 0.062 3.938 14 C -0.483 4.483 15 H 0.083 0.917 16 C 0.031 3.969 17 N -0.831 5.831 18 Si 0.987 3.013 19 H -0.253 1.253 20 H -0.274 1.274 21 H -0.264 1.264 22 C -0.072 4.072 23 C -0.116 4.116 24 C -0.116 4.116 25 C -0.120 4.120 26 C -0.117 4.117 27 C -0.121 4.121 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.412 0.588 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.124 0.876 38 H 0.286 0.714 39 H 0.079 0.921 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.055 0.945 46 H 0.066 0.934 47 H 0.063 0.937 48 H 0.068 0.932 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.565 -5.122 19.024 19.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.081 4.081 3 H 0.073 0.927 4 C -0.167 4.167 5 C 0.282 3.718 6 O -0.448 6.448 7 N -0.285 5.285 8 C -0.077 4.077 9 C -0.135 4.135 10 C -0.248 4.248 11 C -0.146 4.146 12 C -0.198 4.198 13 C 0.058 3.942 14 C -0.513 4.513 15 H 0.101 0.899 16 C -0.183 4.183 17 N -0.458 5.458 18 Si 0.808 3.192 19 H -0.177 1.177 20 H -0.198 1.198 21 H -0.189 1.189 22 C -0.090 4.090 23 C -0.153 4.153 24 C -0.154 4.154 25 C -0.158 4.158 26 C -0.155 4.155 27 C -0.159 4.159 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.248 0.752 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.141 0.859 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.082 0.918 48 H 0.087 0.913 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.115 -4.513 18.906 19.552 hybrid contribution 0.626 -0.274 -0.816 1.064 sum 2.740 -4.787 18.090 18.912 Atomic orbital electron populations 1.21939 0.95364 1.01633 1.01802 1.20831 0.95905 0.98780 0.92608 0.92683 1.21863 1.04218 1.00231 0.90428 1.21574 0.79416 0.85635 0.85150 1.90568 1.41644 1.25800 1.86789 1.43101 1.49838 1.31451 1.04091 1.17982 0.95841 1.05485 0.88421 1.20916 0.95166 0.99262 0.98204 1.20648 1.02678 1.08038 0.93416 1.20746 0.96622 1.00157 0.97030 1.21344 0.98258 1.00081 1.00113 1.17798 0.93204 0.92469 0.90735 1.19576 1.05824 1.29885 0.96047 0.89854 1.26775 1.01821 0.95288 0.94406 1.69836 1.37287 1.36611 1.02023 0.85168 0.76703 0.78927 0.78427 1.17686 1.19839 1.18853 1.21122 0.95370 0.99644 0.92906 1.21622 1.00560 0.98982 0.94134 1.21519 0.95689 1.00837 0.97333 1.21550 0.95713 1.00525 0.97993 1.21531 1.00300 0.99474 0.94149 1.21708 0.94946 1.00650 0.98553 0.93896 0.92327 0.91895 0.87000 0.87014 0.75152 0.86669 0.87113 0.87345 0.85863 0.90337 0.90265 0.92942 0.91633 0.91618 0.91725 0.91419 0.92649 0.91519 0.91817 0.91302 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 8.58 71.99 0.62 -3.14 16 2 C -0.06 -1.46 1.62 -10.79 -0.02 -1.48 16 3 H 0.05 1.55 7.96 -2.39 -0.02 1.53 16 4 C -0.13 -3.14 4.96 29.85 0.15 -3.00 16 5 C 0.49 17.99 7.34 87.66 0.64 18.64 16 6 O -0.57 -24.67 11.14 -3.04 -0.03 -24.70 16 7 N -0.64 -26.02 5.08 -302.28 -1.54 -27.56 16 8 C 0.02 0.88 6.46 38.88 0.25 1.13 16 9 C -0.12 -5.72 8.71 22.36 0.19 -5.53 16 10 C -0.23 -10.95 10.04 22.41 0.22 -10.73 16 11 C -0.13 -6.24 9.96 22.00 0.22 -6.02 16 12 C -0.18 -9.55 8.66 22.47 0.19 -9.36 16 13 C 0.06 3.29 5.63 -21.18 -0.12 3.17 16 14 C -0.48 -24.33 8.42 23.38 0.20 -24.14 16 15 H 0.08 3.87 7.09 -2.91 -0.02 3.84 16 16 C 0.03 1.47 5.36 85.25 0.46 1.92 16 17 N -0.83 -42.04 10.38 21.83 0.23 -41.81 16 18 Si 0.99 36.03 29.56 68.60 2.03 38.06 16 19 H -0.25 -8.66 7.11 99.48 0.71 -7.95 16 20 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 21 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 22 C -0.07 -1.26 1.77 -10.80 -0.02 -1.28 16 23 C -0.12 -1.92 4.85 30.60 0.15 -1.77 16 24 C -0.12 -1.59 5.92 30.59 0.18 -1.41 16 25 C -0.12 -1.61 5.92 30.60 0.18 -1.43 16 26 C -0.12 -1.63 5.92 30.61 0.18 -1.45 16 27 C -0.12 -2.02 4.86 30.61 0.15 -1.87 16 28 H 0.04 1.38 5.95 -2.39 -0.01 1.37 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 1.39 6.43 -2.39 -0.02 1.38 16 31 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.11 2.33 6.17 -2.39 -0.01 2.32 16 33 H 0.41 14.81 7.55 -92.71 -0.70 14.11 16 34 H 0.12 5.66 5.80 -2.91 -0.02 5.64 16 35 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 36 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 37 H 0.12 6.84 5.75 -2.91 -0.02 6.83 16 38 H 0.29 13.18 8.30 -92.71 -0.77 12.41 16 39 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 1.08 6.43 -2.39 -0.02 1.07 16 42 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 47 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.07 1.10 6.32 -2.39 -0.02 1.09 16 49 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -61.82 371.92 4.76 -57.06 By element: Atomic # 1 Polarization: 46.43 SS G_CDS: 0.24 Total: 46.67 kcal Atomic # 6 Polarization: -51.56 SS G_CDS: 3.83 Total: -47.72 kcal Atomic # 7 Polarization: -68.06 SS G_CDS: -1.31 Total: -69.37 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.03 Total: -24.70 kcal Atomic # 14 Polarization: 36.03 SS G_CDS: 2.03 Total: 38.06 kcal Total: -61.82 4.76 -57.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564160965.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.387 kcal (2) G-P(sol) polarization free energy of solvation -61.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds